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Port details
libgff GFF/GTF parsing library based on GCLib
2.0.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-12-05 20:51:11
Last Update: 2021-12-05 20:50:42
Commit Hash: 864d4fd
License: BSL
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (20 items)
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  1. /usr/local/share/licenses/libgff-2.0.0/catalog.mk
  2. /usr/local/share/licenses/libgff-2.0.0/LICENSE
  3. /usr/local/share/licenses/libgff-2.0.0/BSL
  4. include/GArgs.h
  5. include/GBase.h
  6. include/GFaSeqGet.h
  7. include/GFastaIndex.h
  8. include/GHash.hh
  9. include/GList.hh
  10. include/GStr.h
  11. include/GVec.hh
  12. include/codons.h
  13. include/gdna.h
  14. include/gff.h
  15. lib/libgff.a
  16. lib/libgff/cmake/libgffConfig.cmake
  17. lib/libgff/cmake/libgffConfigVersion.cmake
  18. @owner
  19. @group
  20. @mode
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Dependency lines:
  • libgff>0:biology/libgff
To install the port:
cd /usr/ports/biology/libgff/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/libgff
  • pkg install libgff
PKGNAME: libgff
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
libgff
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.0.0
FreeBSD:12:amd642.0.02.0.0
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.0.02.0.0
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch642.0.02.0.0
FreeBSD:13:amd642.0.02.0.0
FreeBSD:13:armv6-2.0.0
FreeBSD:13:armv7-2.0.0
FreeBSD:13:i3862.0.02.0.0
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch642.0.0-
FreeBSD:14:amd642.0.0-
FreeBSD:14:armv62.0.0-
FreeBSD:14:armv72.0.0-
FreeBSD:14:i3862.0.0-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/COMBINE-lab/libgff/tar.gz/v2.0.0?dummy=/
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Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
05 Dec 2021 20:50:42
 files touched by this commit commit hash:864d4fdd1804d2d4f46619f781e397b9ccdf1639  2.0.0
Jason W. Bacon (jwb) search for other commits by this committer
biology/libgff: GFF/GTF parsing library based on GCLib

This is an attempt to perform a simple "libraryfication" of the GFF/GTF
parsing code that is used in GFFRead codebase. There are not many
(any?) relatively lightweight GTF/GFF parsers exposing a C++ interface,
and the goal of this library is to provide this functionality without
the necessity of drawing in a heavy-weight dependency like SeqAn. Note:
This library draws directly from the code in GFFRead and GCLib, and
exists primarily to remove functionality (and hence code) that is
unnecessary for our downstream purposes. In the future, it may be
appropriate to just replace this library wholesale with GCLib.

Number of commits found: 1