Port details
locarna LocARNA provides several tools for the structural analysis of RNA
2.0.1 biology Σ 2.0.1Version of this port present on the latest quarterly branch. Maintainer: yuri@FreeBSD.org Port Added: 2023-07-16 21:57:10Last Update: 2026-05-06 06:54:37Commit Hash: 777481e License: GPLv3WWW: https://github.com/s-will/LocARNA Description: # LocARNA is a collection of alignment tools for the structural analysis of RNA.
Given a set of RNA sequences, LocARNA simultaneously aligns and predicts common
structures for your RNAs. In this way, LocARNA performs Sankoff-like alignment
and is in particular suited for analyzing sets of related RNAs without known
common structure.
LocARNA distinguishes itself from many other Sankoff-style multiple alignment
programs by its performance and low memory complexity, high accuracy, and
richness of features. As unique features, it offers structure-local alignment,
flexible structure and anchor constraints, and provides efficient computation of
reliabilities in sequence-structure alignment. The package offers a robust core
of features and is used as experimental platform for the incorporation of new
features in RNA sequence-structure alignment. Manual pages: #
pkg-plist: as obtained via: make generate-plist # USE_RC_SUBR (Service Scripts)
no SUBR information found for this port
Dependency lines :
For RUN/BUILD depends:locarna>0:biology/locarna For LIB depends:libLocARNA-2.0.so:biology/locarna To install the port : # cd /usr/ports/biology/locarna/ && make install clean To add the package , run one of these commands: pkg install biology/locarna pkg install locarna PKGNAME: locarna Flavors: there is no flavor information for this port. # distinfo: # TIMESTAMP = 1778048412
SHA256 (locarna-2.0.1.tar.gz) = 1f50748d2f8f4bf5888394154d366e0eed8d4e20a3cd0da8b33e200aa1d9edf7
SIZE (locarna-2.0.1.tar.gz) = 3135134
Packages (timestamps in pop-ups are UTC): #
Dependencies # NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered. Build dependencies: #
libRNA.a : biology/viennarna gmake>=4.4.1 : devel/gmake pkgconf>=1.3.0_1 : devel/pkgconf autoconf>=2.73 : devel/autoconf automake>=1.18.1 : devel/automake libtoolize : devel/libtool perl5>=5.42.r<5.43 : lang/perl5.42
Test dependencies: #
bash : shells/bash catch>0 : devel/catch
Runtime dependencies: #
perl5>=5.42.r<5.43 : lang/perl5.42
Library dependencies: #
libgmp.so : math/gmp libgsl.so : math/gsl libmpfr.so : math/mpfr
There are no ports dependent upon this port # Configuration Options : # No options to configure Options name : # biology_locarna USES: # autoreconf gmake libtool perl5 pkgconfig shebangfix
FreshPorts was unable to extract/find any pkg message # Master Sites: #
Number of commits found: 6 #
Commit History - (may be incomplete: for full details, see links to repositories near top of page) Commit Credits Log message 2.0.1 Yuri Victorovich (yuri) biology/locarna: update 2.0.0 → 2.0.1 2.0.0_2 Max Brazhnikov (makc) */*: chase math/gsl update to 2.8
PR: 292499 2.0.0_1 Nuno Teixeira (eduardo) biology/locarna: Move man pages to share/man
Approved by: portmgr (blanket) 2.0.0 Yuri Victorovich (yuri) biology/locarna: Fix build on 14.x and main
The code uses the STL method that was remved in C++17.
Reported by: fallout 2.0.0 Yuri Victorovich (yuri) biology/locarna: Fix tests 2.0.0 Yuri Victorovich (yuri) biology/locarna: New port: LocARNA provides several tools for the structural
analysis of RNA
Number of commits found: 6
