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Port details
mafft Multiple alignment program for amino acid or nucleotide sequences
7.267 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: cartwright@asu.edu search for ports maintained by this maintainer
Port Added: 2006-03-15 10:41:45
Last Update: 2022-07-20 14:20:57
Commit Hash: 37526bb
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (73 items)
Collapse this list.
  1. /usr/local/share/licenses/mafft-7.267/catalog.mk
  2. /usr/local/share/licenses/mafft-7.267/LICENSE
  3. /usr/local/share/licenses/mafft-7.267/BSD2CLAUSE
  4. bin/einsi
  5. bin/fftns
  6. bin/fftnsi
  7. bin/ginsi
  8. bin/linsi
  9. bin/mafft
  10. bin/mafft-distance
  11. bin/mafft-einsi
  12. bin/mafft-fftns
  13. bin/mafft-fftnsi
  14. bin/mafft-ginsi
  15. bin/mafft-homologs.rb
  16. bin/mafft-linsi
  17. bin/mafft-nwns
  18. bin/mafft-nwnsi
  19. bin/mafft-profile
  20. bin/mafft-qinsi
  21. bin/mafft-xinsi
  22. bin/nwns
  23. bin/nwnsi
  24. libexec/mafft/addsingle
  25. libexec/mafft/contrafoldwrap
  26. libexec/mafft/countlen
  27. libexec/mafft/disttbfast
  28. libexec/mafft/dndblast
  29. libexec/mafft/dndfast7
  30. libexec/mafft/dndpre
  31. libexec/mafft/dvtditr
  32. libexec/mafft/f2cl
  33. libexec/mafft/getlag
  34. libexec/mafft/mafft-distance
  35. libexec/mafft/mafft-profile
  36. libexec/mafft/mafftash_premafft.pl
  37. libexec/mafft/makedirectionlist
  38. libexec/mafft/mccaskillwrap
  39. libexec/mafft/multi2hat3s
  40. libexec/mafft/pair2hat3s
  41. libexec/mafft/pairash
  42. libexec/mafft/pairlocalalign
  43. libexec/mafft/regtable2seq
  44. libexec/mafft/replaceu
  45. libexec/mafft/restoreu
  46. libexec/mafft/score
  47. libexec/mafft/seekquencer_premafft.pl
  48. libexec/mafft/seq2regtable
  49. libexec/mafft/setcore
  50. libexec/mafft/setdirection
  51. libexec/mafft/sextet5
  52. libexec/mafft/splittbfast
  53. libexec/mafft/tbfast
  54. libexec/mafft/version
  55. man/man1/mafft-homologs.1.gz
  56. man/man1/mafft.1.gz
  57. share/doc/mafft/readme
  58. share/examples/mafft/sample
  59. share/examples/mafft/sample.dpparttree
  60. share/examples/mafft/sample.fftns2
  61. share/examples/mafft/sample.fftnsi
  62. share/examples/mafft/sample.gins1
  63. share/examples/mafft/sample.ginsi
  64. share/examples/mafft/sample.ginsi.allowshift
  65. share/examples/mafft/sample.lins1
  66. share/examples/mafft/sample.linsi
  67. share/examples/mafft/sample.parttree
  68. share/examples/mafft/samplerna
  69. share/examples/mafft/samplerna.qinsi
  70. share/examples/mafft/samplerna.xinsi
  71. @owner
  72. @group
  73. @mode
Collapse this list.
Dependency lines:
  • mafft>0:biology/mafft
To install the port:
cd /usr/ports/biology/mafft/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/mafft
  • pkg install mafft
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mafft
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
mafft
ABIlatestquarterly
FreeBSD:11:aarch647.2667.266
FreeBSD:11:amd647.2667.266
FreeBSD:11:armv67.2667.266
FreeBSD:11:i3867.2667.266
FreeBSD:11:mips--
FreeBSD:11:mips647.2667.266
FreeBSD:12:aarch647.2667.267
FreeBSD:12:amd647.2677.267
FreeBSD:12:armv67.2667.266
FreeBSD:12:armv77.2667.266
FreeBSD:12:i3867.2677.267
FreeBSD:12:mips--
FreeBSD:12:mips647.2667.266
FreeBSD:12:powerpc64-7.266
FreeBSD:13:aarch647.2677.267
FreeBSD:13:amd647.2677.267
FreeBSD:13:armv67.2667.267
FreeBSD:13:armv77.2677.267
FreeBSD:13:i3867.2677.267
FreeBSD:13:mips--
FreeBSD:13:mips647.2667.266
FreeBSD:13:powerpc647.2667.266
FreeBSD:13:riscv64-7.267
FreeBSD:14:aarch647.267-
FreeBSD:14:amd647.267-
FreeBSD:14:armv67.267-
FreeBSD:14:armv77.267-
FreeBSD:14:i3867.267-
FreeBSD:14:mips--
FreeBSD:14:mips647.267-
FreeBSD:14:powerpc647.266-
FreeBSD:14:riscv647.267-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://mafft.cbrc.jp/alignment/software/
Collapse this list.

Number of commits found: 24

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Jul 2022 14:20:57
 files touched by this commit commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  7.267
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Oct 2021 05:11:23
 files touched by this commit commit hash:98065e997a92839de390a58a1b8f7a3a1afbff50  7.267
Wen Heping (wen) search for other commits by this committer
biology/mafft: Update to 7.267

PR:		259315
Reported by:	gspurki@gmail.com
Approved by:	maintainer
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  7.266
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
19 May 2016 10:21:25
Original commit files touched by this commit Revision:415498  7.266
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
25 Dec 2015 07:19:00
Original commit files touched by this commit Revision:404405  7.266
wen search for other commits by this committer
- Update to 7.266

PR:		205558
Submitted by:	cartwright@asu.edu(maintainer)
27 Jun 2015 14:30:19
Original commit files touched by this commit Revision:390711  7.221
bapt search for other commits by this committer
Use BROKEN helpers
03 Jun 2015 17:04:19
Original commit files touched by this commit Revision:388450  7.221
robak search for other commits by this committer
biology/mafft: update 7.149 -> 7.221

PR:		200603
Submitted by:	Reed A. Cartwright <cartwright@asu.edu> (maintainer)
24 Mar 2015 16:01:22
Original commit files touched by this commit Revision:382111  7.149
marino search for other commits by this committer
6 ports categories: Remove $PTHREAD_LIBS

Categories: cad, devel, java, x11-fm, biology, deskutils

approved by:	PTHREAD blanket
20 Oct 2014 07:10:48
Original commit files touched by this commit Revision:371237  7.149
bapt search for other commits by this committer
Cleanup plist
29 Jul 2014 19:11:53
Original commit files touched by this commit Revision:363374  7.149
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
31 May 2014 04:18:18
Original commit files touched by this commit Revision:355931  7.149
milki search for other commits by this committer
Add DOCS and EXAMPLE options to biology/mafft

PR:		ports/190161
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
Approved by:	swills (maintainer)
20 May 2014 19:35:30
Original commit files touched by this commit Revision:354673  7.149
amdmi3 search for other commits by this committer
- Update to 7.149
- Clarify LICENSE
- Stagify

PR:		189746
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
13 Mar 2014 07:41:34
Original commit files touched by this commit Revision:348042  6.903
miwi search for other commits by this committer
- Convert USE_GMAKE to USES
03 Jan 2014 15:46:52
Original commit files touched by this commit Revision:338550  6.903
adamw search for other commits by this committer
Convert biology to MDOCS and MEXAMPLES
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  6.903
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
08 Sep 2012 08:30:40
Original commit files touched by this commit Revision:303880  6.903
linimon search for other commits by this committer
Mark as broken on sparc64: depends on thread-local storage, which is not
available on sparc64.

Hat:		portmgr
07 Aug 2012 13:54:02
Original commit files touched by this commit   6.903
scheidell search for other commits by this committer
- Submitter is now maintainer

PR:		ports/169920
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
07 Aug 2012 12:26:39
Original commit files touched by this commit   6.903
scheidell search for other commits by this committer
- Update to version 6.903

PR:		ports/169920
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu>
Approved by:	maintainer (timeout, 21 days)
19 Mar 2011 12:38:54
Original commit files touched by this commit   5.743
miwi search for other commits by this committer
- Get Rid MD5 support
27 Jan 2011 17:26:45
Original commit files touched by this commit   5.743
pav search for other commits by this committer
- Change depobj for fasta3 to something that does not change on fasta updates

Reported by:    pointyhat
Feature safe:   yes
04 Feb 2009 03:31:00
Original commit files touched by this commit   5.743
pgollucci search for other commits by this committer
- Update download locations, update WWW

Reported by:    -fetch-original pointyhat run
01 Apr 2008 22:24:51
Original commit files touched by this commit   5.743
pav search for other commits by this committer
- Chase fasta3 update

Reported by:    pointyhat
19 Mar 2006 12:59:16
Original commit files touched by this commit   5.743
garga search for other commits by this committer
- Update to 5.743
- Add a MASTER_SITE backup since oficial one just have last version and make
  it fetchable again

Submitted by:   maintainer by email
Reported by:    krismail
15 Mar 2006 10:41:16
Original commit files touched by this commit   5.734
garga search for other commits by this committer
Add mafft 5.734, multiple sequence alignments based on fast Fourier
transform.

PR:             ports/93059
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 24