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Port details
mapm3 Constructs linkage maps of markers segregating in experimental crosses
3.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 3.0Version of this port present on the latest quarterly branch.
Maintainer: tphilipp@potion-studios.com search for ports maintained by this maintainer
Port Added: 2008-04-06 04:49:23
Last Update: 2016-05-19 11:21:25
SVN Revision: 415498
License: not specified in port
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (6 items)
  1. bin/mapmaker
  2. bin/mapmaker.help
  3. bin/qtl
  4. bin/qtl.help
  5. bin/xmapmaker
  6. bin/xqtl
Collapse this list.
Dependency lines:
  • mapm3>0:biology/mapm3
To install the port: cd /usr/ports/biology/mapm3/ && make install clean
To add the package: pkg install mapm3
PKGNAME: mapm3
Flavors: there is no flavor information for this port.
distinfo:

There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/
  2. http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/
  3. http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  4. http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 May 2016 10:21:25
Original commit files touched by this commit  3.0
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
01 Feb 2016 22:09:10
Original commit files touched by this commit  3.0
Revision:407778
marino search for other commits by this committer
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS

Also link with libncurses, not libtermcap

approved by:	infrastructure blanket
12 Jan 2014 19:07:28
Original commit files touched by this commit  3.0
Revision:339532
riggs search for other commits by this committer
- Fix build with clang
- Stage support

PR:		ports/185655
Submitted by:	Tassilo Philipp <tphilipp@potion-studios.com> (maintainer)
Approved by:	thierry (mentor)
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.0

miwi search for other commits by this committer
- Get Rid MD5 support
20 Nov 2009 22:53:09
Original commit files touched by this commit  3.0

pav search for other commits by this committer
- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat
06 Apr 2008 04:49:06
Original commit files touched by this commit  3.0

rafan search for other commits by this committer
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

PR:             ports/122452
Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>

Number of commits found: 7

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