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Port details
mapm3 Constructs linkage maps of markers segregating in experimental crosses
3.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.0_1Version of this port present on the latest quarterly branch.
Maintainer: tphilipp@potion-studios.com search for ports maintained by this maintainer
Port Added: 2008-04-06 04:49:23
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
License: MAPMAKER
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (12 items)
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  1. /usr/local/share/licenses/mapm3-3.0_1/catalog.mk
  2. /usr/local/share/licenses/mapm3-3.0_1/LICENSE
  3. /usr/local/share/licenses/mapm3-3.0_1/MAPMAKER
  4. bin/mapmaker
  5. bin/mapmaker.help
  6. bin/qtl
  7. bin/qtl.help
  8. bin/xmapmaker
  9. bin/xqtl
  10. @owner
  11. @group
  12. @mode
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Dependency lines:
  • mapm3>0:biology/mapm3
To install the port: cd /usr/ports/biology/mapm3/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/mapm3
  • pkg install mapm3
PKGNAME: mapm3
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
mapm3
ABIlatestquarterly
FreeBSD:11:aarch643.03.0
FreeBSD:11:amd643.0_13.0_1
FreeBSD:11:armv63.03.0_1
FreeBSD:11:i3863.0_13.0_1
FreeBSD:11:mips--
FreeBSD:11:mips643.03.0_1
FreeBSD:12:aarch643.03.0_1
FreeBSD:12:amd643.0_13.0_1
FreeBSD:12:armv63.03.0_1
FreeBSD:12:armv73.03.0_1
FreeBSD:12:i3863.0_13.0_1
FreeBSD:12:mips--
FreeBSD:12:mips643.03.0
FreeBSD:12:powerpc64-3.0_1
FreeBSD:13:aarch643.0_13.0_1
FreeBSD:13:amd643.0_13.0_1
FreeBSD:13:armv63.0_13.0_1
FreeBSD:13:armv73.0_13.0_1
FreeBSD:13:i3863.0_13.0_1
FreeBSD:13:mips--
FreeBSD:13:mips643.0_13.0_1
FreeBSD:13:powerpc643.0_13.0_1
FreeBSD:14:aarch643.0_1-
FreeBSD:14:amd643.0_1-
FreeBSD:14:armv63.0_1-
FreeBSD:14:armv7--
FreeBSD:14:i3863.0_1-
FreeBSD:14:mips--
FreeBSD:14:mips643.0_1-
FreeBSD:14:powerpc643.0_1-
 

There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

Master Sites:
Expand this list (4 items)
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  1. ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/
  2. http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/
  3. http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  4. http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/
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Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  3.0_1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
04 Sep 2020 12:24:23
Original commit files touched by this commit Revision:547537  3.0_1
fernape search for other commits by this committer
biology/mapm3: Reformat patches.

Make them compliant with the expected format.
04 Sep 2020 11:28:24
Original commit files touched by this commit Revision:547530  3.0_1
fernape search for other commits by this committer
biology/mapm3: Fix build with llvm11, gcc10

Another instance of -fno-common issue.

While here:

 * strip executables
 * add license

PR:	249077
Submitted by:	tphilipp@potion-studios.com (maintainer)
MFH:	2020Q3 (build fix, -fno-common)
19 May 2016 10:21:25
Original commit files touched by this commit Revision:415498  3.0
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
01 Feb 2016 22:09:10
Original commit files touched by this commit Revision:407778  3.0
marino search for other commits by this committer
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS

Also link with libncurses, not libtermcap

approved by:	infrastructure blanket
12 Jan 2014 19:07:28
Original commit files touched by this commit Revision:339532  3.0
riggs search for other commits by this committer
- Fix build with clang
- Stage support

PR:		ports/185655
Submitted by:	Tassilo Philipp <tphilipp@potion-studios.com> (maintainer)
Approved by:	thierry (mentor)
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  3.0
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Mar 2011 12:38:54
Original commit files touched by this commit   3.0
miwi search for other commits by this committer
- Get Rid MD5 support
20 Nov 2009 22:53:09
Original commit files touched by this commit   3.0
pav search for other commits by this committer
- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat
06 Apr 2008 04:49:06
Original commit files touched by this commit   3.0
rafan search for other commits by this committer
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

PR:             ports/122452
Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>

Number of commits found: 10