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Port details
mapm3 Constructs linkage maps of markers segregating in experimental crosses
3.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: tphilipp@potion-studios.com search for ports maintained by this maintainer
Port Added: 06 Apr 2008 04:49:23
License: not specified in port
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (6 items)
  1. bin/mapmaker
  2. bin/mapmaker.help
  3. bin/qtl
  4. bin/qtl.help
  5. bin/xmapmaker
  6. bin/xqtl
  7. Collapse this list.

To install the port: cd /usr/ports/biology/mapm3/ && make install clean
To add the package: pkg install mapm3

PKGNAME: mapm3

distinfo:

SHA256 (mapm3-source.tar.Z) = 107c8d0e7e89e2fe43fe17233d38c22161def851c8094435f3440a39c0cdca4c
SIZE (mapm3-source.tar.Z) = 1321227

There are no ports dependent upon this port


Configuration Options
     No options to configure

USES:
ncurses

Master Sites:
  1. ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/
  2. http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/
  3. http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  4. http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 May 2016 10:21:25
Original commit files touched by this commit  3.0
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
01 Feb 2016 22:09:10
Original commit files touched by this commit  3.0
Revision:407778
marino search for other commits by this committer
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS

Also link with libncurses, not libtermcap

approved by:	infrastructure blanket
12 Jan 2014 19:07:28
Original commit files touched by this commit  3.0
Revision:339532
riggs search for other commits by this committer
- Fix build with clang
- Stage support

PR:		ports/185655
Submitted by:	Tassilo Philipp <tphilipp@potion-studios.com> (maintainer)
Approved by:	thierry (mentor)
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.0
miwi search for other commits by this committer
- Get Rid MD5 support
20 Nov 2009 22:53:09
Original commit files touched by this commit  3.0
pav search for other commits by this committer
- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat
06 Apr 2008 04:49:06
Original commit files touched by this commit  3.0
rafan search for other commits by this committer
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

PR:             ports/122452
Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>

Number of commits found: 7

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