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Port details
megahit Ultra-fast single-node large and complex metagenomics assembly
1.2.9_1 biologynew! on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-22 16:42:09
Last Update: 2022-11-24 14:10:13
Commit Hash: 4b98707
License: GPLv3
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (20 items)
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  1. /usr/local/share/licenses/megahit-1.2.9_1/catalog.mk
  2. /usr/local/share/licenses/megahit-1.2.9_1/LICENSE
  3. /usr/local/share/licenses/megahit-1.2.9_1/GPLv3
  4. bin/megahit
  5. bin/megahit_core
  6. bin/megahit_core_no_hw_accel
  7. bin/megahit_core_popcnt
  8. bin/megahit_toolkit
  9. share/megahit/test_data/empty.fa
  10. share/megahit/test_data/generate_random_fasta.py
  11. share/megahit/test_data/loop.fa
  12. share/megahit/test_data/r1.il.fa.gz
  13. share/megahit/test_data/r2.il.fa.bz2
  14. share/megahit/test_data/r3_1.fa
  15. share/megahit/test_data/r3_2.fa
  16. share/megahit/test_data/r4.fa
  17. share/megahit/test_data/ref.fa
  18. @owner
  19. @group
  20. @mode
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Dependency lines:
  • megahit>0:biology/megahit
To install the port:
cd /usr/ports/biology/megahit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/megahit
  • pkg install megahit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: megahit
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: amd64 powerpc64 powerpc64le riscv64
distinfo:

Packages (timestamps in pop-ups are UTC):
megahit
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-falloutpkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd641.2.9pkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd641.2.9_1pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
  3. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/voutcn/megahit/tar.gz/v1.2.9?dummy=/
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Number of commits found: 2

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.2.9_1
24 Nov 2022 14:10:13
commit hash:4b987075629fc9516f81c5f2b94afe6c5f04f9d3commit hash:4b987075629fc9516f81c5f2b94afe6c5f04f9d3commit hash:4b987075629fc9516f81c5f2b94afe6c5f04f9d3commit hash:4b987075629fc9516f81c5f2b94afe6c5f04f9d3 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/megahit: Add cmake patch to respect ports build flags

Removes agressive optimizations hard-coded upstream
1.2.9
22 Nov 2022 16:39:22
commit hash:acb3a0de6468b1fe930e53af1894505e9b8d64c7commit hash:acb3a0de6468b1fe930e53af1894505e9b8d64c7commit hash:acb3a0de6468b1fe930e53af1894505e9b8d64c7commit hash:acb3a0de6468b1fe930e53af1894505e9b8d64c7 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/megahit: Ultra-fast single-node metagenomics assembly

MEGAHIT is a single node assembler for large and complex metagenomics
NGS reads, such as soil. It makes use of succinct de Bruijn graph
(SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize
a CUDA-enabled GPU to accelerate its SdBG contstruction.

Number of commits found: 2