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Port details
molden Display molecular orbitals and electron densities in 2D and 3D
7.1_1,1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7.1_1,1Version of this port present on the latest quarterly branch.
Maintainer: jmd@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
Last Update: 2023-04-23 09:09:58
Commit Hash: 8d3e020
License: Molden
WWW:
https://www.theochem.ru.nl/molden/
Description:
Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac, it also supports a number of other programs via the Molden Format. Molden reads all the required information from the GAMESS / GAUSSIAN outputfile. Molden is capable of displaying Molecular Orbitals, the electron density and the Molecular minus Atomic density. Either the spherically averaged atomic density or the oriented ground state atomic density can be subtracted for a number of standard basis sets. Molden supports contour plots, 3-d grid plots with hidden lines and a combination of both. It can write a variety of graphics instructions; postscript, XWindows, VRML, povray, OpenGL, tekronix4014, hpgl, hp2392 and Figure. Both Xwindows and OpenGL versions of Molden are also capable of importing and displaying of chemx, PDB, and a variety of mopac/ampac files and lots of other formats. Molden also can animate reaction paths and molecular vibrations. It can calculate and display the true or Multipole Derived Electrostatic Potential and atomic charges can be fitted to the Electrostatic Potential calculated on a Connolly surface. Molden also features an stand alone forcefield program ambfor, which can optimise geometries with the combined Amber (protein) and GAFF (small molecules) force fields. Atom typing can be done automatically and interactively from within Molden, as well as firing optimisation jobs. Molden has a powerful Z-matrix editor which give full control over the geometry and allows you to build molecules from scratch, including polypeptides.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (8 items)
Collapse this list.
  1. bin/ambfor
  2. bin/ambmd
  3. bin/gmolden
  4. bin/molden
  5. bin/surf
  6. /usr/local/share/licenses/molden-7.1_1,1/catalog.mk
  7. /usr/local/share/licenses/molden-7.1_1,1/LICENSE
  8. /usr/local/share/licenses/molden-7.1_1,1/Molden
Collapse this list.
Dependency lines:
  • molden>0:biology/molden
To install the port:
cd /usr/ports/biology/molden/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/molden
  • pkg install molden
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: molden
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1657929531 SHA256 (molden7.1.tar.gz) = 98a39f0aa1667c14c36f40c0251522984245e5ba282af8fbc8a2f06079e40d43 SIZE (molden7.1.tar.gz) = 14645590

Packages (timestamps in pop-ups are UTC):
molden
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest7.1_1,17.1_1,1-7.1_1,17.1_1,1---
FreeBSD:13:quarterly7.1_1,17.1_1,1-7.1_1,17.1_1,1-7.1_1,17.1_1,1
FreeBSD:14:latest7.1_1,17.1_1,1-7.1_1,17.1_1,1---
FreeBSD:14:quarterly7.1_1,17.1_1,1-7.1_1,17.1_1,1-7.1_1,17.1_1,1
FreeBSD:15:latest7.1_1,17.1_1,1n/a7.1_1,1n/a-7.1_1,17.1_1,1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. makedepend : devel/makedepend
  2. gfortran12 : lang/gcc12
  3. gmake>=4.3 : devel/gmake
  4. as : devel/binutils
  5. xorgproto>=0 : x11/xorgproto
  6. xorgproto>=0 : x11/xorgproto
  7. x11.pc : x11/libX11
  8. xmu.pc : x11-toolkits/libXmu
Runtime dependencies:
  1. gfortran12 : lang/gcc12
  2. x11.pc : x11/libX11
  3. xmu.pc : x11-toolkits/libXmu
Library dependencies:
  1. libGL.so : graphics/libglvnd
  2. libGLU.so : graphics/libGLU
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for molden-7.1_1,1: DATA=on: Install data files DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings
Options name:
biology_molden
USES:
fortran gl gmake xorg
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://ftp.science.ru.nl/Molden/
Collapse this list.

Number of commits found: 109 (showing only 100 on this page)

1 | 2  »  

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
7.1_1,1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
7.1,1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
7.1,1
23 Jul 2022 20:00:53
commit hash: 8dc7394ac87a6e1630ebfc2219f8668fa9b36f40commit hash: 8dc7394ac87a6e1630ebfc2219f8668fa9b36f40commit hash: 8dc7394ac87a6e1630ebfc2219f8668fa9b36f40commit hash: 8dc7394ac87a6e1630ebfc2219f8668fa9b36f40 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/molden: Update 6.7 -> 7.1

PR:		265245
Approved by:	jmd@ (maintainer)
6.7,1
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
6.7,1
15 Jul 2022 23:34:09
commit hash: 328d02d88e00267338e1a266aafb94f27827f4b3commit hash: 328d02d88e00267338e1a266aafb94f27827f4b3commit hash: 328d02d88e00267338e1a266aafb94f27827f4b3commit hash: 328d02d88e00267338e1a266aafb94f27827f4b3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/molden: Unbreak build; Correct WWW

For unbreak:
- pass FFLAGS to the build
- fix several errors in C
- remove the failing 'ex' command from makefile

Reported by:	fallout
Approved by:	portmgr (unbreak)
6.7,1
17 Jan 2022 13:20:25
commit hash: dfd0e4d833e7c94e10af3c7614cbc20a4d3074a7commit hash: dfd0e4d833e7c94e10af3c7614cbc20a4d3074a7commit hash: dfd0e4d833e7c94e10af3c7614cbc20a4d3074a7commit hash: dfd0e4d833e7c94e10af3c7614cbc20a4d3074a7 files touched by this commit
Tobias Kortkamp (tobik) search for other commits by this committer
*: Clean up some things

- Fix typos
- Fix overwritten variables

Reported by:	portscan
6.7,1
05 Jan 2022 23:01:00
commit hash: 1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0commit hash: 1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0commit hash: 1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0commit hash: 1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0 files touched by this commit
Johannes M Dieterich (jmd) search for other commits by this committer
biology/molden: update to 6.7

PR:		238858
Reported by:	yuri@
5.8.2_4,1
22 Jun 2021 18:53:08
commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77commit hash: da3162c7c9f01912ba1940e188b253f2b5c7ba77 files touched by this commit
Kevin Bowling (kbowling) search for other commits by this committer
graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824
5.8.2_3,1
06 May 2021 11:47:41
commit hash: adb93122cbf753a26a0497479dbb88cf415de29bcommit hash: adb93122cbf753a26a0497479dbb88cf415de29bcommit hash: adb93122cbf753a26a0497479dbb88cf415de29bcommit hash: adb93122cbf753a26a0497479dbb88cf415de29b files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Deorbit RESTRICTED && NO_CDROM, part one.

For ports that already use the licenses framwork, merge the content of
RESTRICTED/NO_CDROM/LEGAL* entries into LICENSEs.

Approved by:	rene
Differential Revision:	https://reviews.freebsd.org/D30010
5.8.2_3,1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
5.8.2_3,1
29 Mar 2021 21:51:04
Revision:569522Original commit files touched by this commit
yuri search for other commits by this committer
biology/molden: Fix build with gfortran10
5.8.2_3,1
04 Nov 2019 21:08:20
Revision:516742Original commit files touched by this commit
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories b

Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
5.8.2_3,1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
5.8.2_2,1
22 Apr 2019 13:16:34
Revision:499638Original commit files touched by this commit
gerald search for other commits by this committer
Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
5.8.2_1,1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
5.8.2,1
13 Nov 2018 07:03:16
Revision:484858Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: update to 5.8.2

Also add do-install-{option}-on targets and shadow ${MKDIR} commands.

PR:		233060
Submitted by:	yuri
5.7_16,1
07 Nov 2018 00:03:35
Revision:484371Original commit files touched by this commit
yuri search for other commits by this committer
biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gcc

Add $(LDFLAGS) to makefile.
While here, add USES=gl.

Approved by:	portmgr
5.7_16,1
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
5.7_15,1
20 Jul 2018 09:44:14
Revision:475001Original commit files touched by this commit
yuri search for other commits by this committer
biology/molden: Unbreak by updating the MASTER_SITES URL

The upstream keeps changing the URL.
5.7_15,1
20 Jul 2018 08:17:36
Revision:474994Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: unfetchaable

Reported by:	pkg-fallout
5.7_15,1
13 Jul 2018 09:28:15
Revision:474570Original commit files touched by this commit
yuri search for other commits by this committer
biology/molden: Unbreak by updating the MASTER_SITES URL
5.7_15,1
13 Jul 2018 08:13:47
Revision:474562Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: unfetchable

Reported by:	pkg-fallout
MFH:		2018Q3
5.7_15,1
20 May 2018 21:41:57
Revision:470488Original commit files touched by this commit
jmd search for other commits by this committer
biolog/molden: unbreak after at least two intransparent distfile updates

Reviewed by:	zeising (mentor)
Approved by:	zeising (mentor)
Differential Revision:	https://reviews.freebsd.org/D15333
5.7_14,1
07 May 2018 05:34:10
Revision:469265Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: checksum and size mismatch

Reported by:	pkg-fallout
MFH:		2018Q2
5.7_14,1
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
5.7_13,1
01 Nov 2017 03:48:31
Revision:453261Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: chase another intransparent upstream distfile upgrade.

Reviewed by:	swills (mentor), mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D12829
5.7_12,1
28 Sep 2017 02:43:40
Revision:450799Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: unbreak by chasing latest intransparent distfile update.

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D12521
5.7_11,1
10 Sep 2017 20:55:39
Revision:449591Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
5.7_10,1
13 Jul 2017 21:56:29
Revision:445717Original commit files touched by this commit
jmd search for other commits by this committer
Chase next distfile update. Upstream contacted whether we would be allowed to
host a distfile copy.

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D11586
5.7_9,1
12 Jul 2017 03:37:21
Revision:445570Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: Unbreak by chasing their latest opaque update to the
distribution.

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D11338
5.7_8,1
22 Jun 2017 08:24:22
Revision:444104Original commit files touched by this commit
mat search for other commits by this committer
Mark BROKEN.

=> Attempting to fetch ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz
fetch: ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz: size mismatch:
expected 5339411, actual 5339467
=> Couldn't fetch it - please try to retrieve this

Sponsored by:	Absolight
5.7_8,1
03 Jun 2017 12:48:35
Revision:442480Original commit files touched by this commit
linimon search for other commits by this committer
Previous commit unbroke the port.

Reported by:	xmj
5.7_8,1
24 May 2017 03:26:06
Revision:441560Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: Chase recent upstream change of molden distfile.

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10864
5.7_7,1
23 May 2017 05:03:16
Revision:441503Original commit files touched by this commit
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
5.7_6,1
19 May 2017 18:42:56
Revision:441258Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: checksum and size mismatch

Reported by:	pkg-fallout
5.7_6,1
01 Apr 2017 15:23:32
Revision:437439Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
5.7_5,1
11 Feb 2017 02:06:03
Revision:433832Original commit files touched by this commit
jmd search for other commits by this committer
biology/molden: Unbreak port, regenerate checksums, increment PORTREVISION.

Reviewed by:	swills (mentor), pi (former maintainer)
Approved by:	swills (mentor), pi (former maintainer)
Differential Revision:	https://reviews.freebsd.org/D9501
5.7_4,1
07 Feb 2017 14:20:09
Revision:433554Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Mark BROKEN: does not fetch, size/checksum mismatch

Approved by:	portmgr blanket
5.7_4,1
07 Dec 2016 13:24:57
Revision:428057Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
5.7_3,1
03 Dec 2016 17:03:42
Revision:427627Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: distfile was updated in xwin.c
5.7_2,1
10 Nov 2016 05:13:02
Revision:425830Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: add missing LICENSE_NAME

Reported by:	pkg-fallout
5.7_1,1
09 Nov 2016 20:49:58
Revision:425806Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: fix distinfo, set LICENSE

Submitted by:	marino
Reported by:	Eduardo Lemos de Sa <eduardo.lemosdesa@gmail.com>
MFH:		2016Q4
5.7,1
01 Oct 2016 08:02:20
Revision:423039Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: unfetchable, size mismatch

Reported by:	pkg-fallout
5.7,1
26 Aug 2016 06:00:47
Revision:420890Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: 5.4 -> 5.7

- Adds editable text fields that are longer than the visible string
  and introduces a new way of selecting a range of amino acids.
- introduces interfaces to the open source packages openbabel and pharmer.
  Openbabel is used to create 2D images of the molecules in a .sdf
  file. It is also used to do 2D fingerprint searching.
  Pharmer is used to pharmacophore (3D) searching against indexed
  databases of .sdf files.
5.4_1,1
22 Aug 2016 11:06:07
Revision:420601Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Mark BROKEN: does not fetch (distfile was removed from ftp)

Approved by:	portmgr blanket
5.4_1,1
19 May 2016 10:21:25
Revision:415498Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
5.4_1,1
20 Jan 2016 19:31:52
Revision:406795Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: updated distfile, take maintainer

- upstream distfile is moving target with same version number

Submitted by:	antoine
5.4,1
20 Jan 2016 18:57:11
Revision:406791Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN: checksum and size mismatch

Reported by:	pkg-fallout
5.4,1
18 Jan 2016 19:32:37
Revision:406605Original commit files touched by this commit
pi search for other commits by this committer
biology/molden: 5.0.7 -> 5.4

Changes:
- Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally.
- Pdb files can now be clipped.
- Fixes missing residues. Introduces an alternative way of generating rotamers,
  without using z-matrices. This potentially a faster algorithm.
- Supports Movie making through avconv/ffmpeg.
- calculates the Electron Localization Function (ELF).
- Updated code of ambfor/ambmd to speed up optimisations/MD of proteins
  solvated in water (Jan, 2014).

PR:		204341
5.0.7_2,1
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
5.0.7_1,1
05 May 2014 11:15:53
Revision:352993Original commit files touched by this commit
bapt search for other commits by this committer
Catch a couple of missing convertsion to :tu/:tl

Submitted by:	ak
With hat:	portmgr
5.0.7_1,1
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
5.0.7,1
27 Feb 2014 08:58:36
Revision:346271Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 5.0.7

PR:		185942
Submitted by:	ports fury
5.0.6_1,1
29 Dec 2013 14:30:20
Revision:337992Original commit files touched by this commit
tijl search for other commits by this committer
- USES=fortran gmake.
- Add dependency on xproto.
- Fix build with new CFLAGS.
- Staging.
- New WWW.
5.0.6_1,1
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
5.0.6,1
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
5.0.6,1
26 Apr 2013 06:57:37
Revision:316578Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 5.0.6

PR:		178032
Submitted by:	Ports Fury
5.0.4,1
14 Dec 2012 17:47:16
Revision:308917Original commit files touched by this commit
eadler search for other commits by this committer
Update to 5.0.4
5.0.2,1
30 Nov 2012 23:51:49
Revision:308042Original commit files touched by this commit
sperber search for other commits by this committer
- Update to version 5.0.2
- Add MAKE_JOBS_UNSAFE
- Convert to optionsng

PR:           ports/171970
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
4.6_3,1
23 Sep 2012 15:40:58
Revision:304749Original commit files touched by this commit
danfe search for other commits by this committer
Mea culpa, s/Whom/Created by/
4.6_3,1
23 Sep 2012 15:38:59
Revision:304748Original commit files touched by this commit
danfe search for other commits by this committer
- Adjust "Created by" tag to include more complete submitter's information
- Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite
  article from COMMENT where appropriate
4.6_3,1
22 Sep 2012 15:34:17
Revision:304686Original commit files touched by this commit
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
4.6_3,1
04 Aug 2012 22:52:04
Original commit files touched by this commit
kwm search for other commits by this committer
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
developed in years and has been dropped from the MESA 8.0 distribution.
Freeglut is a rewrite of glut and is actively developed and is used by
many linux distributions instead of libglut.

Bump all ports that directly depend on libglut because of the shlib version
change.

There are some extra items in this patch.

*) Because freeglut doesn't have the same dependancies as libglut, some ports
	need extra dependencies added to USE_XORG to make them build.
*) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped
	with libglut.
*) Remove option for libglut/freeglut selection in games/cake, only freeglut
	remains now.
*) While here fix a png related build issue games/vegastrike.

Thanks to miwi for running the exp-run.

Approved by:	portmgr (miwi)

Collaboration with:	zeising@
Obtained from:	xorg-dev staging area.
4.6_2,1
24 Oct 2011 09:11:38
Original commit files touched by this commit
dougb search for other commits by this committer
The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues
4.6_2,1
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
4.6_2,1
13 Sep 2009 00:08:01
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
4.6_1,1
02 Aug 2009 19:59:03
Original commit files touched by this commit
pav search for other commits by this committer
- Unbreak fetch

Submitted by:   maintainer
4.6_1,1
09 Jan 2009 19:31:49
Original commit files touched by this commit
pav search for other commits by this committer
- Unbreak distinfo after portrevision bump

Reported by:    pointyhat
4.6_1,1
07 Jan 2009 16:34:27
Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
4.6,1
05 Jan 2009 17:27:29
Original commit files touched by this commit
pav search for other commits by this committer
- Remove conditional checks relevant only on FreeBSD 5.x and older
4.6,1
11 Nov 2008 02:21:28
Original commit files touched by this commit
wxs search for other commits by this committer
- Roll back to 4.6 as 4.7 is the development version and is constantly being
  re-rolled.
- Move post-patch target into files/patch-xwin.c to remove sed invocation.
- Respect NOPORTDATA and DATADIR.
- Bring files/patch-aa back (to preserve history) and retire patch-makefile.
- Fixup files/patch-xwin.c so it applies cleanly to this version.
4.7
07 Nov 2008 20:21:13
Original commit files touched by this commit
wxs search for other commits by this committer
Mark as broken since it has been re-rolled for the 4th(?) time.
4.7
07 Nov 2008 00:33:32
Original commit files touched by this commit
wxs search for other commits by this committer
Distfile was re-rolled.  The changes were to fix some bugs in the code.
While I'm here, make it respect NOPORTDOCS.
4.7
04 Nov 2008 21:55:39
Original commit files touched by this commit
wxs search for other commits by this committer
Update to 4.7

PR:             ports/128476
Submitted by:   fulvio ciriaco <oivulf@gmail.com>
4.5_2
15 Aug 2008 17:42:47
Original commit files touched by this commit
bsam search for other commits by this committer
Unbreak building for 8-x.

Submitted by:   Steve Kargl <sgk at troutmask.apl.washington.edu> at ports@ ML
4.5_2
25 Apr 2008 22:53:23
Original commit files touched by this commit
pav search for other commits by this committer
- Mark BROKEN on -CURRENT: error: 'linkat' redeclared as different kind of
symbol

Reported by:    pointyhat
4.5_2
19 Apr 2008 17:56:05
Original commit files touched by this commit Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
4.5_1
12 Jul 2007 06:33:38
Original commit files touched by this commit
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
4.5_1
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
4.5
24 Apr 2007 10:24:51
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 4.5
4.4_3
23 Jan 2007 13:05:24
Original commit files touched by this commit
miwi search for other commits by this committer
- Fix typo
4.4_3
12 Jan 2007 05:39:19
Original commit files touched by this commit
maho search for other commits by this committer
Using only gfortran42. not gcc42.
Bump portrevision.
4.4_2
09 Jan 2007 01:47:06
Original commit files touched by this commit
maho search for other commits by this committer
Migrated to gfortran.
4.4_2
17 Sep 2006 13:41:56
Original commit files touched by this commit
thierry search for other commits by this committer
Unbreak: molden has been updated on Aug 17, with the same DISTNAME.

Changelog at <http://www.cmbi.ru.nl/molden/HISTORY>.
4.4_1
04 Sep 2006 14:50:49
Original commit files touched by this commit
kris search for other commits by this committer
BROKEN: Size mismatch.  Since this is unmaintained, deprecate and schedule
for termination on 2006-12-01
4.4_1
03 Sep 2006 00:34:47
Original commit files touched by this commit
kris search for other commits by this committer
NO_CDROM and NO_PACKAGE are not appropriate here
4.4_1
03 May 2006 23:26:35
Original commit files touched by this commit
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
4.4_1
12 Jan 2006 12:54:32
Original commit files touched by this commit
sem search for other commits by this committer
- Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:             ports/90247
Submitted by:   Ermal Lu?i <eri--@albabsd.org>
4.4
01 Dec 2005 14:42:44
Original commit files touched by this commit
barner search for other commits by this committer
- Unbreak by updating to 4.4
- Add dependecy to MESA

PR:             ports/89795
Submitted by:   Johan van Selst <johans@stack.nl>
4.3
23 Nov 2005 23:59:57
Original commit files touched by this commit
pav search for other commits by this committer
- BROKEN: Size mismatch
4.3
20 Jan 2005 03:44:55
Original commit files touched by this commit
maho search for other commits by this committer
o update to 4.3
o unbreak
o due to no fix for long period, drop maintainership to ports.
3.9
18 Dec 2004 23:02:35
Original commit files touched by this commit
kris search for other commits by this committer
This port is scheduled to be removed on 2005-02-18 if it is still
broken at that time, and a fix has not been submitted to GNATS.
3.9
20 Jun 2004 08:40:40
Original commit files touched by this commit
kris search for other commits by this committer
BROKEN: Checksum mismatch
3.9
22 Oct 2003 09:29:55
Original commit files touched by this commit
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
3.9
19 Jul 2003 04:17:06
Original commit files touched by this commit
maho search for other commits by this committer
enhancement, build and install the opengl viewer, moldenogl.
update to 3.9, not 3.8, which is newer :)

Committed by maintainer timeout:
> Sat Apr  5 17:46:57 EST 2003 - edwin - informed maintainer

PR:             47177
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
3.8
21 Feb 2003 11:01:38
Original commit files touched by this commit
knu search for other commits by this committer
De-pkg-comment.
3.8
08 Jan 2003 12:05:57
Original commit files touched by this commit
arved search for other commits by this committer
Update to 3.8

Approved by:    rmiya@cc.hirosaki-u.ac.jp (maintainer)
3.7_2
27 May 2002 06:25:53
Original commit files touched by this commit
sada search for other commits by this committer
Note distribution term.
Requested by:   maintainer
3.7_2
23 May 2002 08:56:37
Original commit files touched by this commit
sada search for other commits by this committer
Back my last commit out.
We couldn't update distinfo without inspecting distfile's changes.
PR:     ports/37476
Suggested by:   kris

Number of commits found: 109 (showing only 100 on this page)

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