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Port details
mothur Software for bioinformatics of the microbial ecology community
1.46.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.45.3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-20 17:59:35
Last Update: 2021-09-02 09:29:56
Commit Hash: 03cb17e
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/mothur
  2. /usr/local/share/licenses/mothur-1.46.1/catalog.mk
  3. /usr/local/share/licenses/mothur-1.46.1/LICENSE
  4. /usr/local/share/licenses/mothur-1.46.1/GPLv3
Collapse this list.
Dependency lines:
  • mothur>0:biology/mothur
To install the port: cd /usr/ports/biology/mothur/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/mothur
  • pkg install mothur
PKGNAME: mothur
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
mothur
ABIlatestquarterly
FreeBSD:11:aarch64-1.43.0
FreeBSD:11:amd641.46.11.45.3
FreeBSD:11:armv6-1.43.0
FreeBSD:11:i3861.46.11.45.3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.46.1
FreeBSD:12:amd641.46.11.46.1
FreeBSD:12:armv6-1.43.0
FreeBSD:12:armv7-1.43.0
FreeBSD:12:i3861.46.11.46.1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.43.0
FreeBSD:13:aarch641.43.01.46.1
FreeBSD:13:amd641.46.11.46.1
FreeBSD:13:armv61.43.01.43.0
FreeBSD:13:armv71.43.01.43.0
FreeBSD:13:i3861.46.11.46.1
FreeBSD:13:mips--
FreeBSD:13:mips641.43.01.43.0
FreeBSD:13:powerpc641.43.01.45.3
FreeBSD:14:aarch641.46.1-
FreeBSD:14:amd641.46.1-
FreeBSD:14:armv61.45.2-
FreeBSD:14:armv71.45.2-
FreeBSD:14:i3861.46.1-
FreeBSD:14:mips--
FreeBSD:14:mips641.46.1-
FreeBSD:14:powerpc641.45.2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. gmake>=4.3 : devel/gmake
Library dependencies:
  1. libreadline.so.8 : devel/readline
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/mothur/mothur/tar.gz/v1.46.1?dummy=/
Collapse this list.

Number of commits found: 14

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
02 Sep 2021 09:29:56
 files touched by this commit commit hash:03cb17ef46adf1223603a06606c79c8b7fb98f42  1.46.1
yuri search for other commits by this committer
biology/mothur: Update 1.46.0 -> 1.46.1

Reported by:	portscout
26 Aug 2021 17:45:39
 files touched by this commit commit hash:2c2bb694d2eb99085eedcb2d93b69d601ba2a36f  1.46.0
yuri search for other commits by this committer
biology/mothur: Update 1.45.3 -> 1.46.0

Reported by:	portscout
09 May 2021 16:11:11
 files touched by this commit commit hash:4e8265c62483e7ac9bd87f401fd318418d8b2a86  1.45.3
yuri search for other commits by this committer
biology/mothur: Update 1.45.2 -> 1.45.3

Reported by:	portscout
13 Apr 2021 00:29:17
 files touched by this commit commit hash:fd20bf82b699c91e1ddc0b92ddc98b038483c706  1.45.2
jwb search for other commits by this committer
biology/mothur: Update to 1.45.2

Numerous bug fixes and enhancements since 1.43.0

Approved by:    yuri
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.43.0
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.43.0
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
19 Oct 2020 10:30:11
Original commit files touched by this commit Revision:552729  1.43.0
pkubaj search for other commits by this committer
biology/mothur: fix build on powerpc64le

New PPC hardware usually uses little-endian systems. Let __BIG_ENDIAN__ and
__LITTLE_ENDIAN__ define endianness.
09 May 2020 19:24:50
Original commit files touched by this commit Revision:534792  1.43.0
tijl search for other commits by this committer
Update devel/gmake to 4.3.

Some changes have been made in this release that break backwards
compatibility.  Let USES=gmake force users to upgrade to this version so
port maintainers don't have to support older versions.

PR:		245725
Exp-run by:	antoine
Approved by:	portmgr (antoine)
05 Oct 2019 17:04:43
Original commit files touched by this commit Revision:513838  1.43.0
yuri search for other commits by this committer
biology/mothur: Update 1.42.3 -> 1.43.0

Reported by:	portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.42.3_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
28 Jun 2019 04:02:22
Original commit files touched by this commit Revision:505257  1.42.3
yuri search for other commits by this committer
biology/mothur: Update 1.42.2 -> 1.42.3

Reported by:	portscout
19 Jun 2019 23:54:44
Original commit files touched by this commit Revision:504606  1.42.2
yuri search for other commits by this committer
biology/mothur: Update 1.42.1-3 -> 1.42.2
20 May 2019 21:20:56
Original commit files touched by this commit Revision:502174  1.42.1.3
yuri search for other commits by this committer
biology/mothur: Add USES=compiler:c++11-lang
20 May 2019 17:59:18
Original commit files touched by this commit Revision:502128  1.42.1.3
yuri search for other commits by this committer
New port: biology/mothur: Software for bioinformatics of the microbial ecology
community

Number of commits found: 14