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Port details
mrbayes Bayesian inference of phylogeny
3.1.2_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 15 Dec 2007 15:13:49
License: not specified in port
MrBayes is a program for the Bayesian estimation of phylogeny.

Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
tree conditioned on the observations. The conditioning is accomplished
using Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.

WWW: http://mrbayes.csit.fsu.edu/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (1 items)
  1. bin/mb
  2. Collapse this list.

To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
To add the package: pkg install mrbayes

PKGNAME: mrbayes

distinfo:

SHA256 (mrbayes-3.1.2.tar.gz) = c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4
SIZE (mrbayes-3.1.2.tar.gz) = 545968


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
Library dependencies:
  1. libreadline.so.7 : devel/readline
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for mrbayes-3.1.2_2:
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings

USES:
gmake readline:port

Master Sites:
  1. http://cytranet.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  2. http://downloads.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  3. http://excellmedia.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  4. http://freefr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  5. http://jaist.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  6. http://kent.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  7. http://nchc.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  8. http://netcologne.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  9. http://netix.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  10. http://superb-dca2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  11. http://superb-sea2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  12. http://ufpr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  13. http://vorboss.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  14. https://cytranet.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  15. https://downloads.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  16. https://excellmedia.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  17. https://freefr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  18. https://jaist.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  19. https://kent.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  20. https://nchc.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  21. https://netcologne.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  22. https://netix.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  23. https://superb-dca2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  24. https://superb-sea2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  25. https://ufpr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  26. https://vorboss.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
27 Jun 2017 13:46:53
Original commit files touched by this commit  3.1.2_2
Revision:444463
sunpoet search for other commits by this committer
Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine
15 Aug 2014 16:37:37
Original commit files touched by this commit  3.1.2_1
Revision:364996
adamw search for other commits by this committer
Fix build on -current by un-clobbering LDFLAGS. Also, don't
mute installation commands.
10 Dec 2013 17:54:12
Original commit files touched by this commit  3.1.2_1
Revision:336072
bapt search for other commits by this committer
Support stage
USE_GMAKE -> USES=gmake
use USES=readline:port
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.1.2_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.1.2_1
miwi search for other commits by this committer
- Get Rid MD5 support
12 May 2009 11:28:17
Original commit files touched by this commit  3.1.2_1
itetcu search for other commits by this committer
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
5 to 6.

Forgotten by:   araujo@
Reported by:    QAT
17 May 2008 16:52:34
Original commit files touched by this commit  3.1.2
pav search for other commits by this committer
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
15 Dec 2007 15:13:41
Original commit files touched by this commit  3.1.2
miwi search for other commits by this committer
MrBayes is a program for the Bayesian estimation of phylogeny.

Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
tree conditioned on the observations. The conditioning is accomplished
using Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.

WWW: http://mrbayes.csit.fsu.edu/

PR:             ports/118542
Submitted by:   mzaki at biol.s.u-tokyo.ac.jp

Number of commits found: 8

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