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Port details
mrbayes Bayesian inference of phylogeny
3.1.2_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 3.1.2Version of this port present on the latest quarterly branch.
Broken BROKEN: unfetchable
Ignore IGNORE: is marked as broken: unfetchable
Maintainer: mzaki@m.u-tokyo.ac.jp search for ports maintained by this maintainer
Port Added: 2007-12-15 15:13:49
Last Update: 2019-11-06 12:48:32
SVN Revision: 516880
License: not specified in port
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (1 items)
  1. bin/mb
Collapse this list.
Dependency lines:
  • mrbayes>0:biology/mrbayes
To install the port: cd /usr/ports/biology/mrbayes/ && make install clean
A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted
PKGNAME: mrbayes
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
Library dependencies:
  1. libreadline.so.8 : devel/readline
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. http://cytranet.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  2. http://downloads.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  3. http://excellmedia.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  4. http://freefr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  5. http://jaist.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  6. http://kent.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  7. http://nchc.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  8. http://netcologne.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  9. http://netix.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  10. http://superb-dca2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  11. http://superb-sea2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  12. http://ufpr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  13. http://vorboss.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  14. https://cytranet.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  15. https://downloads.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  16. https://excellmedia.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  17. https://freefr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  18. https://jaist.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  19. https://kent.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  20. https://nchc.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  21. https://netcologne.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  22. https://netix.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  23. https://superb-dca2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  24. https://superb-sea2.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  25. https://ufpr.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/
  26. https://vorboss.dl.sourceforge.net/project/mrbayes/mrbayes/3.1.2/

Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Nov 2019 12:48:32
Original commit files touched by this commit  3.1.2_3
Revision:516880  Sanity Test Failure
antoine search for other commits by this committer
Mark a few ports BROKEN, unfetchable
09 Apr 2019 14:04:50
Original commit files touched by this commit  3.1.2_3
Revision:498476
sunpoet search for other commits by this committer
Update devel/readline to 8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine
27 Jun 2017 13:46:53
Original commit files touched by this commit  3.1.2_2
Revision:444463
sunpoet search for other commits by this committer
Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine
15 Aug 2014 16:37:37
Original commit files touched by this commit  3.1.2_1
Revision:364996
adamw search for other commits by this committer
Fix build on -current by un-clobbering LDFLAGS. Also, don't
mute installation commands.
10 Dec 2013 17:54:12
Original commit files touched by this commit  3.1.2_1
Revision:336072
bapt search for other commits by this committer
Support stage
USE_GMAKE -> USES=gmake
use USES=readline:port
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.1.2_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.1.2_1

miwi search for other commits by this committer
- Get Rid MD5 support
12 May 2009 11:28:17
Original commit files touched by this commit  3.1.2_1

itetcu search for other commits by this committer
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
5 to 6.

Forgotten by:   araujo@
Reported by:    QAT
17 May 2008 16:52:34
Original commit files touched by this commit  3.1.2

pav search for other commits by this committer
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
15 Dec 2007 15:13:41
Original commit files touched by this commit  3.1.2

miwi search for other commits by this committer
MrBayes is a program for the Bayesian estimation of phylogeny.

Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
tree conditioned on the observations. The conditioning is accomplished
using Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.

WWW: http://mrbayes.csit.fsu.edu/

PR:             ports/118542
Submitted by:   mzaki at biol.s.u-tokyo.ac.jp

Number of commits found: 10

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