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Port details
ncbi-cxx-toolkit NCBI C++ Toolkit
21.0.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
21.0.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-08 07:55:03
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
Also Listed In: science devel
License: PD
NCBI C++ Toolkit provides free, portable, public domain libraries with no
restrictions use. It has been written in the National Center for Biotechnology
Information in Bethesda, MD.

It is vaguely a successor, or a new generation of biology/ncbi-toolkit.

It contains:
* Networking and Interprocess Communication (IPC) library
* MultiThreading Library
* CGI and Fast-CGI Library, HTML Generation Library
* SQL Database Access Library, C++ wrapper library for BerkeleyDB
* C++ IOSTREAM Adaptor/Wrapper Library
* GZIP and BZ2 C++ Wrapper Library with IOSTREAM adaptors
* ASN.1 and XML Serialization Library with C++ Code Generator Tool (datatool)
* Date and Time Library
* File System Function Library
* Command-Line Argument, Configuration and Environment Processing Library
* Sequence Alignment Algorithms Library
* BLAST Engine Library
* Biological Sequences Retrieval and Processing Library
* Portable FLTK and OpenGL based GUI and graphic libraries
* XmlWrapp (XML parsing and handling, XSLT, XPath)

WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (3 items)
  1. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/catalog.mk
  2. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/LICENSE
  3. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/PD
  4. Collapse this list.
Dependency lines:
  • ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

To install the port: cd /usr/ports/biology/ncbi-cxx-toolkit/ && make install clean
To add the package: pkg install ncbi-cxx-toolkit

PKGNAME: ncbi-cxx-toolkit

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1538937167
SHA256 (ncbi_cxx--21_0_0.tar.gz) = 48cc3ae24ca63d1ab1be148e7525e8c5b9f4eaa5eb36d172800784b640a84a4f
SIZE (ncbi_cxx--21_0_0.tar.gz) = 52661343


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
  2. python2.7 : lang/python27
  3. x11.pc : x11/libX11
  4. xpm.pc : x11/libXpm
  5. perl5>=5.26<5.27 : lang/perl5.26
Runtime dependencies:
  1. bash : shells/bash
  2. python2.7 : lang/python27
  3. x11.pc : x11/libX11
  4. xpm.pc : x11/libXpm
  5. perl5>=5.26<5.27 : lang/perl5.26
Library dependencies:
  1. libpcre.so : devel/pcre
  2. libmysqlclient.so.18 : databases/mysql56-client
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
compiler:c++11-lang gmake mysql perl5 python shebangfix ssl

Master Sites:
  1. ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2018/Apr_2_2018/

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Dec 2018 01:35:36
Original commit files touched by this commit  21.0.0_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
08 Oct 2018 07:54:49
Original commit files touched by this commit  21.0.0
Revision:481520
yuri search for other commits by this committer
New port: biology/ncbi-cxx-toolkit: NCBI C++ Toolkit

Number of commits found: 2

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