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Port details
ncbi-cxx-toolkit NCBI C++ Toolkit
21.0.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-08 07:55:03
Last Update: 2018-12-12 01:35:36
SVN Revision: 487272
Also Listed In: science devel
License: PD
NCBI C++ Toolkit provides free, portable, public domain libraries with no
restrictions use. It has been written in the National Center for Biotechnology
Information in Bethesda, MD.

It is vaguely a successor, or a new generation of biology/ncbi-toolkit.

It contains:
* Networking and Interprocess Communication (IPC) library
* MultiThreading Library
* CGI and Fast-CGI Library, HTML Generation Library
* SQL Database Access Library, C++ wrapper library for BerkeleyDB
* C++ IOSTREAM Adaptor/Wrapper Library
* GZIP and BZ2 C++ Wrapper Library with IOSTREAM adaptors
* ASN.1 and XML Serialization Library with C++ Code Generator Tool (datatool)
* Date and Time Library
* File System Function Library
* Command-Line Argument, Configuration and Environment Processing Library
* Sequence Alignment Algorithms Library
* BLAST Engine Library
* Biological Sequences Retrieval and Processing Library
* Portable FLTK and OpenGL based GUI and graphic libraries
* XmlWrapp (XML parsing and handling, XSLT, XPath)

WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (3 items)
  1. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/catalog.mk
  2. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/LICENSE
  3. /usr/local/share/licenses/ncbi-cxx-toolkit-21.0.0_1/PD
  4. Collapse this list.
Dependency lines:
  • ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

To install the port: cd /usr/ports/biology/ncbi-cxx-toolkit/ && make install clean
To add the package: pkg install ncbi-cxx-toolkit

PKGNAME: ncbi-cxx-toolkit

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1538937167
SHA256 (ncbi_cxx--21_0_0.tar.gz) = 48cc3ae24ca63d1ab1be148e7525e8c5b9f4eaa5eb36d172800784b640a84a4f
SIZE (ncbi_cxx--21_0_0.tar.gz) = 52661343


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
  2. python2.7 : lang/python27
  3. x11.pc : x11/libX11
  4. xpm.pc : x11/libXpm
  5. perl5>=5.26<5.27 : lang/perl5.26
Runtime dependencies:
  1. bash : shells/bash
  2. python2.7 : lang/python27
  3. x11.pc : x11/libX11
  4. xpm.pc : x11/libXpm
  5. perl5>=5.26<5.27 : lang/perl5.26
Library dependencies:
  1. libpcre.so : devel/pcre
  2. libmysqlclient.so.18 : databases/mysql56-client
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
compiler:c++11-lang gmake mysql perl5 python shebangfix ssl

Master Sites:
  1. ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2018/Apr_2_2018/

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Dec 2018 01:35:36
Original commit files touched by this commit  21.0.0_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
08 Oct 2018 07:54:49
Original commit files touched by this commit  21.0.0
Revision:481520
yuri search for other commits by this committer
New port: biology/ncbi-cxx-toolkit: NCBI C++ Toolkit

Number of commits found: 2

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