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We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
ncbi-cxx-toolkit NCBI C++ Toolkit
26.0.1_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-08 07:55:03
Last Update: 2023-01-18 14:48:50
Commit Hash: 3db760a
Also Listed In: devel science
License: PD
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1_2/catalog.mk
  2. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1_2/LICENSE
  3. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1_2/PD
Collapse this list.
Dependency lines:
  • ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit
Conflicts:
CONFLICTS_INSTALL:
  • dakota
  • libxdiff
  • ncbi-blast+
  • ncbi-toolkit
  • proj
  • py*-speedtest-cli
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/ncbi-cxx-toolkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-cxx-toolkit
  • pkg install ncbi-cxx-toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ncbi-cxx-toolkit
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
ncbi-cxx-toolkit
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-fallout22.0.0
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-fallout22.0.0
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout26.0.1_1
FreeBSD:12:amd6426.0.1_226.0.1_1
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i38626.0.1_226.0.1_1
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch6426.0.1_226.0.1_1
FreeBSD:13:amd6426.0.1_226.0.1_1
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv726.0.1_226.0.1_1
FreeBSD:13:i38626.0.1_226.0.1_1
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-fallout26.0.1
FreeBSD:14:aarch6426.0.1_2pkg-fallout
FreeBSD:14:amd6426.0.1_2pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv726.0.1_2pkg-fallout
FreeBSD:14:i38626.0.1_2pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. python3.9 : lang/python39
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. x11.pc : x11/libX11
  5. xpm.pc : x11/libXpm
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. bash : shells/bash
  2. python3.9 : lang/python39
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. x11.pc : x11/libX11
  5. xpm.pc : x11/libXpm
Library dependencies:
  1. libcdd.so : math/cddlib
  2. liblmdb.so : databases/lmdb
  3. libpcre.so : devel/pcre
  4. libmysqlclient.so.20 : databases/mysql57-client
There are no ports dependent upon this port

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/ncbi/ncbi-cxx-toolkit-public/tar.gz/release-26.0.1?dummy=/
Collapse this list.

Number of commits found: 20

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
26.0.1_2
18 Jan 2023 14:48:50
commit hash:3db760ad79ec3a2494d776c56a89c6a3eed8f537commit hash:3db760ad79ec3a2494d776c56a89c6a3eed8f537commit hash:3db760ad79ec3a2494d776c56a89c6a3eed8f537commit hash:3db760ad79ec3a2494d776c56a89c6a3eed8f537 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
graphics/proj: Update to 9.1.1
26.0.1_1
17 Nov 2022 08:20:57
commit hash:de3b9f557801bb43af80c0e2bd6085a70a783631commit hash:de3b9f557801bb43af80c0e2bd6085a70a783631commit hash:de3b9f557801bb43af80c0e2bd6085a70a783631commit hash:de3b9f557801bb43af80c0e2bd6085a70a783631 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
graphics/proj: Update to 9.1.0

Release notes:
https://proj.org/news.html#id37

Also remove proj-data dependency.

You can use proj to retrieve data or install graphics/proj-data
manually.
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
26.0.1
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
26.0.1
06 Aug 2022 23:28:43
commit hash:183ec5cd65c000e21aa59f9b569362b0f296fb57commit hash:183ec5cd65c000e21aa59f9b569362b0f296fb57commit hash:183ec5cd65c000e21aa59f9b569362b0f296fb57commit hash:183ec5cd65c000e21aa59f9b569362b0f296fb57 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/ncbi-cxx-toolkit: Broken on armv6

Reported by:	fallout
26.0.1
06 Feb 2022 18:36:07
commit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9e files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
26.0.1
26 Jan 2022 23:51:37
commit hash:e2641662d618fe725aa4539a3a2a0830383114bacommit hash:e2641662d618fe725aa4539a3a2a0830383114bacommit hash:e2641662d618fe725aa4539a3a2a0830383114bacommit hash:e2641662d618fe725aa4539a3a2a0830383114ba files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/ncbi-cxx-toolkit: Update 25.2.0 -> 26.0.1
25.2.0
10 Jan 2022 15:15:39
commit hash:bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash:bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash:bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash:bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
(Only the first 15 lines of the commit message are shown above View all of this commit message)
25.2.0
01 Oct 2021 07:14:37
commit hash:a3d97bcf09b7b63977a9d405ed984807c0bc39edcommit hash:a3d97bcf09b7b63977a9d405ed984807c0bc39edcommit hash:a3d97bcf09b7b63977a9d405ed984807c0bc39edcommit hash:a3d97bcf09b7b63977a9d405ed984807c0bc39ed files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0

Reported by:	upstream ML notification
25.0.0
30 Sep 2021 21:23:30
commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7 files touched by this commit
Rene Ladan (rene) search for other commits by this committer
cleanup: drop support for EOL FreeBSD 11.X

Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
25.0.0
04 Sep 2021 03:58:21
commit hash:4fac1dac10494e4f6cf08edf672df2be52083019commit hash:4fac1dac10494e4f6cf08edf672df2be52083019commit hash:4fac1dac10494e4f6cf08edf672df2be52083019commit hash:4fac1dac10494e4f6cf08edf672df2be52083019 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/ncbi-cxx-toolkit: Broken on 11

Reported by:	fallout
25.0.0
25 Aug 2021 20:28:23
commit hash:cc5fdc14d94309a7dbae28f96689202781c1e299commit hash:cc5fdc14d94309a7dbae28f96689202781c1e299commit hash:cc5fdc14d94309a7dbae28f96689202781c1e299commit hash:cc5fdc14d94309a7dbae28f96689202781c1e299 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0
22.0.0
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
22.0.0
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
22.0.0
27 Sep 2020 04:57:44
Revision:550237Original commit files touched by this commit
yuri search for other commits by this committer
biology/ncbi-cxx-toolkit: Fix build on 13

Reported by:	fallout
22.0.0
25 Sep 2020 06:57:44
Revision:549992Original commit files touched by this commit
yuri search for other commits by this committer
biology/ncbi-cxx-toolkit: Update 21.0.0 -> 22.0.0
21.0.0_2
04 Nov 2019 21:08:20
Revision:516742Original commit files touched by this commit
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories b

Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
21.0.0_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
21.0.0_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
21.0.0
08 Oct 2018 07:54:49
Revision:481520Original commit files touched by this commit
yuri search for other commits by this committer
New port: biology/ncbi-cxx-toolkit: NCBI C++ Toolkit

Number of commits found: 20