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Port details
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-24 23:42:15
Last Update: 2021-04-26 16:53:11
Commit Hash: dd7bec7
Also Listed In: perl5
License: PD
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (65 items)
Collapse this list.
  1. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_1/catalog.mk
  2. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_1/LICENSE
  3. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_1/PD
  4. bin/accn-at-a-time
  5. bin/align-columns
  6. bin/amino-acid-composition
  7. bin/archive-pubmed
  8. bin/between-two-genes
  9. bin/download-ncbi-data
  10. bin/download-pubmed
  11. bin/download-sequence
  12. bin/ecommon.sh
  13. bin/edirect.pl
  14. bin/efetch
  15. bin/efilter
  16. bin/einfo
  17. bin/elink
  18. bin/epost
  19. bin/esample
  20. bin/esearch
  21. bin/esummary
  22. bin/exclude-uid-lists
  23. bin/expand-current
  24. bin/fetch-pubmed
  25. bin/filter-stop-words
  26. bin/gbf2xml
  27. bin/hgvs2spdi
  28. bin/hlp-xtract.txt
  29. bin/index-extras
  30. bin/index-pubmed
  31. bin/intersect-uid-lists
  32. bin/join-into-groups-of
  33. bin/nquire
  34. bin/phrase-search
  35. bin/pm-collect
  36. bin/pm-index
  37. bin/pm-invert
  38. bin/pm-merge
  39. bin/pm-prepare
  40. bin/pm-promote
  41. bin/pm-refresh
  42. bin/pm-stash
  43. bin/print-columns
  44. bin/rchive
  45. bin/rchive.FreeBSD
  46. bin/reorder-columns
  47. bin/run-ncbi-converter
  48. bin/skip-if-file-exists
  49. bin/sort-table
  50. bin/sort-uniq-count
  51. bin/sort-uniq-count-rank
  52. bin/stream-pubmed
  53. bin/test-edirect
  54. bin/theme-aliases
  55. bin/transmute
  56. bin/transmute.FreeBSD
  57. bin/word-at-a-time
  58. bin/xml2json
  59. bin/xml2tbl
  60. bin/xtract
  61. bin/xtract.FreeBSD
  62. bin/xy-plot
  63. @owner
  64. @group
  65. @mode
Collapse this list.
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
To install the port: cd /usr/ports/biology/ncbi-entrez-direct/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-entrez-direct
  • pkg install ncbi-entrez-direct
PKGNAME: ncbi-entrez-direct
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
ncbi-entrez-direct
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd6414.9.20210423_114.9.20210423_1
FreeBSD:11:armv6--
FreeBSD:11:i38614.9.20210423_114.9.20210423_1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-14.9.20210423_1
FreeBSD:12:amd6414.9.20210423_114.9.20210423_1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i38614.9.20210423_114.9.20210423_1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-14.9.20210423_1
FreeBSD:13:amd6414.9.20210423_114.9.20210423_1
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i38614.9.20210423_114.9.20210423_1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch6414.9.20210423_1-
FreeBSD:14:amd6414.9.20210423_1-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i38614.9.20210423_1-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. go : lang/go
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-libwww>=0 : www/p5-libwww
  2. p5-LWP-Protocol-https>=0 : www/p5-LWP-Protocol-https
  3. p5-XML-Simple>=0 : textproc/p5-XML-Simple
  4. curl : ftp/curl
  5. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/14.9.20210423/
Collapse this list.

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Apr 2021 16:53:11
 files touched by this commit commit hash:dd7bec77114786adf79d35c325337a59c9684848  14.9.20210423_1
jwb search for other commits by this committer
biology/ncbi-entrez-direct: Update to 14.9.20210423_1

A few fixes to pass upstream test script
24 Apr 2021 23:40:16
 files touched by this commit commit hash:ab50f8435a78a574ac5ce683004b078c5baf209d  14.9.20210423
jwb search for other commits by this committer
biology/ncbi-entrez-direct: Access to the NCBI's interconnected databases

Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected
databases (publication, sequence, structure, gene, variation, expression, etc.)
from a UNIX terminal window.

Number of commits found: 2