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Port details
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_23 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_22Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-24 23:42:15
Last Update: 2024-07-03 08:29:54
Commit Hash: c4b51c2
Also Listed In: perl5
License: PD
WWW:
https://www.ncbi.nlm.nih.gov/books/NBK179288/
Description:
Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (65 items)
Collapse this list.
  1. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_23/catalog.mk
  2. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_23/LICENSE
  3. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_23/PD
  4. bin/accn-at-a-time
  5. bin/align-columns
  6. bin/amino-acid-composition
  7. bin/archive-pubmed
  8. bin/between-two-genes
  9. bin/download-ncbi-data
  10. bin/download-pubmed
  11. bin/download-sequence
  12. bin/ecommon.sh
  13. bin/edirect.pl
  14. bin/efetch
  15. bin/efilter
  16. bin/einfo
  17. bin/elink
  18. bin/epost
  19. bin/esample
  20. bin/esearch
  21. bin/esummary
  22. bin/exclude-uid-lists
  23. bin/expand-current
  24. bin/fetch-pubmed
  25. bin/filter-stop-words
  26. bin/gbf2xml
  27. bin/hgvs2spdi
  28. bin/hlp-xtract.txt
  29. bin/index-extras
  30. bin/index-pubmed
  31. bin/intersect-uid-lists
  32. bin/join-into-groups-of
  33. bin/nquire
  34. bin/phrase-search
  35. bin/pm-collect
  36. bin/pm-index
  37. bin/pm-invert
  38. bin/pm-merge
  39. bin/pm-prepare
  40. bin/pm-promote
  41. bin/pm-refresh
  42. bin/pm-stash
  43. bin/print-columns
  44. bin/rchive
  45. bin/rchive.FreeBSD
  46. bin/reorder-columns
  47. bin/run-ncbi-converter
  48. bin/skip-if-file-exists
  49. bin/sort-table
  50. bin/sort-uniq-count
  51. bin/sort-uniq-count-rank
  52. bin/stream-pubmed
  53. bin/test-edirect
  54. bin/theme-aliases
  55. bin/transmute
  56. bin/transmute.FreeBSD
  57. bin/word-at-a-time
  58. bin/xml2json
  59. bin/xml2tbl
  60. bin/xtract
  61. bin/xtract.FreeBSD
  62. bin/xy-plot
  63. @owner
  64. @group
  65. @mode
Collapse this list.
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
Conflicts:
CONFLICTS_INSTALL:
  • ebook-tools
  • p5-XML-Compile
To install the port:
cd /usr/ports/biology/ncbi-entrez-direct/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-entrez-direct
  • pkg install ncbi-entrez-direct
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ncbi-entrez-direct
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1678294976 SHA256 (edirect-14.9.20210423/edirect.tar.gz) = 9d6534226164fc5dfae7abcf25bfdbd08db068b27f1c13b8a3c4681cda5b0cea SIZE (edirect-14.9.20210423/edirect.tar.gz) = 829737

Expand this list (20 items)

Collapse this list.

SHA256 (edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz) = a00342a7ffb8b119346dce56e152a111cbb9eab3970c429cc2ed4272aec2858e SIZE (edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz) = 1267532 SHA256 (edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz) = d06994daa4d561c2ab477a7072bb7e40a8d39904c88ebf649a1b89105aabdf35 SIZE (edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz) = 156593 SHA256 (edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz) = d872f3fb5fcc8d8ff25e915670f7ce867a035cfd7a38a2e01ef1550f8770331b SIZE (edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz) = 6784 SHA256 (edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz) = 3bf2da7358c8ed33c05bac2ca733749ade03eadf184d81cc7b16fcbe2e230f1d SIZE (edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz) = 367144 SHA256 (edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz) = 8903a451771edca578c2aa09848f23027dc02df2c67f675f4dd1aae257a71ad6 SIZE (edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz) = 3076 SHA256 (edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz) = 1027954f9abbe06b6e117e3047af70204dd0eb4f8c27fcd459fb2574b279755f SIZE (edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz) = 9571 SHA256 (edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz) = addbdc341d7685ed4cc8d2d8a8fd2bd9b784bde00d0ea99fb251039fc10c611c SIZE (edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz) = 4548 SHA256 (edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz) = b763f4eb0d0f130821b52484565b32bae1585c4cb0edc57adb94f13b67765176 SIZE (edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz) = 190666 SHA256 (edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz) = f85d1185ba116cd40ef8cf702fe1d960ed41d039c08fd314dbeb5866f3166f27 SIZE (edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz) = 8348127 SHA256 (edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz) = 810c8f1b7704674971ab6b2b614aba20a5a1765018fd2c639f528dbbcbf88b1f SIZE (edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz) = 1429723

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Packages (timestamps in pop-ups are UTC):
ncbi-entrez-direct
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest14.9.20210423_2314.9.20210423_23-14.9.20210423_2314.9.20210423_23---
FreeBSD:13:quarterly14.9.20210423_2314.9.20210423_23-14.9.20210423_2314.9.20210423_23---
FreeBSD:14:latest14.9.20210423_2214.9.20210423_23-14.9.20210423_2214.9.20210423_23---
FreeBSD:14:quarterly14.9.20210423_2214.9.20210423_23-14.9.20210423_2214.9.20210423_23---
FreeBSD:15:latest14.9.20210423_2314.9.20210423_23n/a14.9.20210423_20n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. go121 : lang/go121
  3. perl5>=5.36<5.37 : lang/perl5.36
Runtime dependencies:
  1. p5-libwww>=0 : www/p5-libwww
  2. p5-LWP-Protocol-https>=0 : www/p5-LWP-Protocol-https
  3. p5-XML-Simple>=0 : textproc/p5-XML-Simple
  4. curl : ftp/curl
  5. perl5>=5.36<5.37 : lang/perl5.36
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
No options to configure
Options name:
biology_ncbi-entrez-direct
USES:
go:modules perl5 shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/14.9.20210423/
Collapse this list.

Number of commits found: 30

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
14.9.20210423_23
03 Jul 2024 08:29:54
commit hash: c4b51c2028302d40de3907a04d99a92001bb83b1commit hash: c4b51c2028302d40de3907a04d99a92001bb83b1commit hash: c4b51c2028302d40de3907a04d99a92001bb83b1commit hash: c4b51c2028302d40de3907a04d99a92001bb83b1 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update
14.9.20210423_22
15 Jun 2024 09:52:17
commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
14.9.20210423_21
13 May 2024 17:56:04
commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
14.9.20210423_20
15 Apr 2024 08:20:04
commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
14.9.20210423_19
24 Mar 2024 14:29:00
commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
lang/go: Change DEFAULT to 1.21

PR:		277776
Approved by:	portmgr (exp-run)
14.9.20210423_18
11 Feb 2024 10:39:17
commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		276530
14.9.20210423_17
07 Dec 2023 02:22:10
commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		274405
14.9.20210423_16
08 Sep 2023 14:34:56
commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update
14.9.20210423_15
04 Aug 2023 14:24:50
commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
14.9.20210423_14
08 Apr 2023 15:13:25
commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
14.9.20210423_13
11 Mar 2023 08:34:45
commit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5bcommit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5bcommit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5bcommit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5b files touched by this commit
Robert Clausecker (fuz) search for other commits by this committer
biology/ncbi-entrez-direct: fix build on riscv64

Bump golang.org/x/sys dependency to a version new
enough to build on riscv64-freebsd.

Sponsored by:	Berliner Linux User Group e.V.
Approved by:	portmgr (build fix blanket)
Differential Revision: https://reviews.freebsd.org/D38996
14.9.20210423_12
09 Mar 2023 19:18:07
commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go ports update
14.9.20210423_11
15 Feb 2023 19:06:01
commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
14.9.20210423_10
09 Feb 2023 21:55:23
commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after GO_DEFAULT update.
14.9.20210423_9
14 Jan 2023 11:31:17
commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTVERSION after lang/go{118,119} update
14.9.20210423_8
11 Dec 2022 11:17:27
commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
14.9.20210423_7
06 Oct 2022 19:24:26
commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
14.9.20210423_6
08 Sep 2022 16:33:18
commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
14.9.20210423_5
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
14.9.20210423_5
07 Sep 2022 10:26:41
commit hash: b86221feeafaacbff38b27dd5999866460e3a67bcommit hash: b86221feeafaacbff38b27dd5999866460e3a67bcommit hash: b86221feeafaacbff38b27dd5999866460e3a67bcommit hash: b86221feeafaacbff38b27dd5999866460e3a67b files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
cleanup: remove trailing whitepaces
14.9.20210423_5
03 Aug 2022 21:35:13
commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go update

Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update.
14.9.20210423_4
14 Jul 2022 12:46:05
commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{117,118} update
14.9.20210423_3
07 Jun 2022 21:56:10
commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Bump port revisons after lang/go{117,118} update
14.9.20210423_2
06 Jun 2022 18:19:10
commit hash: b16eb860cc492d498eea6df7f481c93bbc851167commit hash: b16eb860cc492d498eea6df7f481c93bbc851167commit hash: b16eb860cc492d498eea6df7f481c93bbc851167commit hash: b16eb860cc492d498eea6df7f481c93bbc851167 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Repair after switching to versioned Go ports

- Add 1.17 to USES=go for ports that still need go117, remove GO_PORT;
- Add missing ${SETENV} ${MAKE_ENV} to repair BINARY_ALIAS;
- Remove explicit dependencies on lang/go.

PR:		264336
Reviewed by:	ygy jwb yuri mikael drtr0jan@yandex.ru decke mat
Differential Revision:	https://reviews.freebsd.org/D35346
14.9.20210423_2
30 Mar 2022 07:01:44
commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 files touched by this commit
Guangyuan Yang (ygy) search for other commits by this committer
*/*: Bump PORTREVISION after lang/go 1.18 update
14.9.20210423_1
06 Feb 2022 18:36:07
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
14.9.20210423_1
10 Jan 2022 15:15:39
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
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14.9.20210423_1
26 Apr 2021 16:53:11
commit hash: dd7bec77114786adf79d35c325337a59c9684848commit hash: dd7bec77114786adf79d35c325337a59c9684848commit hash: dd7bec77114786adf79d35c325337a59c9684848commit hash: dd7bec77114786adf79d35c325337a59c9684848 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/ncbi-entrez-direct: Update to 14.9.20210423_1

A few fixes to pass upstream test script
14.9.20210423
24 Apr 2021 23:40:16
commit hash: ab50f8435a78a574ac5ce683004b078c5baf209dcommit hash: ab50f8435a78a574ac5ce683004b078c5baf209dcommit hash: ab50f8435a78a574ac5ce683004b078c5baf209dcommit hash: ab50f8435a78a574ac5ce683004b078c5baf209d files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/ncbi-entrez-direct: Access to the NCBI's interconnected databases

Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected
databases (publication, sequence, structure, gene, variation, expression, etc.)
from a UNIX terminal window.

Number of commits found: 30