notbugIf you buy from Amazon USA, please support us by using this link.
Port details
ncbi-toolkit NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
2017.01.06_1 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-10-29 10:56:24
Last Update: 2019-01-06 20:39:43
SVN Revision: 489529
License: not specified in port
The NCBI (National Center for Biotechnology Information) development toolkit,
containing various libraries needed by NCBI applications, as well as a
software suite containing, amongst other things, NCBI BLAST 2.0.

From the README:

  The NCBI Software Development Toolkit was developed for the production and
  distribution of GenBank, Entrez, BLAST, and related services by NCBI. We
  make it freely available to the public without restriction to facilitate
  the use of NCBI by the scientific community. However, please understand
  that while we feel we have done a high quality job, this is not commercial
  software.

  The documentation lags considerably behind the software and we must make
  any changes required by our data production needs. Nontheless, many people
  have found it a useful and stable basis for a number of tools and
  applications.

WWW: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (821 items)
  1. bin/Nentrez
  2. bin/Psequin
  3. bin/asn2ff
  4. bin/asn2gb
  5. bin/asn2idx
  6. bin/asn2xml
  7. bin/asndhuff
  8. bin/asntool
  9. bin/blastcl3
  10. bin/cdscan
  11. bin/checksub
  12. bin/ddv
  13. bin/debruijn
  14. bin/demo_regexp
  15. bin/demo_regexp_grep
  16. bin/dosimple
  17. bin/entrcmd
  18. bin/entrez2
  19. bin/errhdr
  20. bin/fa2htgs
  21. bin/findspl
  22. bin/gene2xml
  23. bin/getmesh
  24. bin/getpub
  25. bin/gil2bin
  26. bin/idfetch
  27. bin/indexpub
  28. bin/makeset
  29. bin/ncbisort
  30. bin/sbtedit
  31. bin/seqtest
  32. bin/tbl2asn
  33. bin/test_regexp
  34. bin/testcore
  35. bin/testobj
  36. bin/testval
  37. bin/udv
  38. bin/vecscreen
  39. include/ncbi/FSpCompat.h
  40. include/ncbi/FullPath.h
  41. include/ncbi/MoreCarbonAccessors.h
  42. include/ncbi/MoreFilesExtras.h
  43. include/ncbi/MoreFilesX.h
  44. include/ncbi/Optimization.h
  45. include/ncbi/OptimizationEnd.h
  46. include/ncbi/PubStructAsn.h
  47. include/ncbi/a2ferr.h
  48. include/ncbi/a2ferrdf.h
  49. include/ncbi/a2fstruc.h
  50. include/ncbi/aacomp.h
  51. include/ncbi/accentr.h
  52. include/ncbi/accid1.h
  53. include/ncbi/accutils.h
  54. include/ncbi/acerdapi.h
  55. include/ncbi/aceread.h
  56. include/ncbi/actutils.h
  57. include/ncbi/algorend.h
  58. include/ncbi/alignloc.h
  59. include/ncbi/alignmgr.h
  60. include/ncbi/alignmgr2.h
  61. include/ncbi/alignval.h
  62. include/ncbi/aliparse.h
  63. include/ncbi/aliread.h
  64. include/ncbi/all.h
  65. include/ncbi/allpub.h
  66. include/ncbi/apparam.h
  67. include/ncbi/asn.h
  68. include/ncbi/asn2ff.h
  69. include/ncbi/asn2ff6.h
  70. include/ncbi/asn2ffg.h
  71. include/ncbi/asn2ffp.h
  72. include/ncbi/asn2gnbi.h
  73. include/ncbi/asn2gnbk.h
  74. include/ncbi/asn2gnbp.h
  75. include/ncbi/asn2graphic.h
  76. include/ncbi/asn2graphicp.h
  77. include/ncbi/asnacces.h
  78. include/ncbi/asnalign.h
  79. include/ncbi/asnbibli.h
  80. include/ncbi/asnblock.h
  81. include/ncbi/asncode.h
  82. include/ncbi/asnent2.h
  83. include/ncbi/asnentgene.h
  84. include/ncbi/asnfdef.h
  85. include/ncbi/asnfeat.h
  86. include/ncbi/asngbseq.h
  87. include/ncbi/asngen.h
  88. include/ncbi/asnid0.h
  89. include/ncbi/asninsdseq.h
  90. include/ncbi/asnloc.h
  91. include/ncbi/asnmacro.h
  92. include/ncbi/asnmdrs.h
  93. include/ncbi/asnmedli.h
  94. include/ncbi/asnmim.h
  95. include/ncbi/asnmime.h
  96. include/ncbi/asnmla.h
  97. include/ncbi/asnmla2.h
  98. include/ncbi/asnneten.h
  99. include/ncbi/asnproj.h
  100. include/ncbi/asnprt.h
  101. include/ncbi/asnpub.h
  102. include/ncbi/asnpubme.h
  103. include/ncbi/asnres.h
  104. include/ncbi/asnseq.h
  105. include/ncbi/asnsset.h
  106. include/ncbi/asnsubmt.h
  107. include/ncbi/asntable.h
  108. include/ncbi/asntax1.h
  109. include/ncbi/asntax3.h
  110. include/ncbi/asntaxon.h
  111. include/ncbi/asntseq.h
  112. include/ncbi/asnvalid.h
  113. include/ncbi/bandalgn.h
  114. include/ncbi/binary.h
  115. include/ncbi/biosrc.h
  116. include/ncbi/blast.h
  117. include/ncbi/blast_dust.h
  118. include/ncbi/blastconcat.h
  119. include/ncbi/blastconcatdef.h
  120. include/ncbi/blastdef.h
  121. include/ncbi/blastkar.h
  122. include/ncbi/blastpat.h
  123. include/ncbi/blastpri.h
  124. include/ncbi/blfmtutl.h
  125. include/ncbi/blocks.h
  126. include/ncbi/blstspc.h
  127. include/ncbi/blstxml.h
  128. include/ncbi/bspview.h
  129. include/ncbi/bxmlobj.h
  130. include/ncbi/casn.h
  131. include/ncbi/cdconfig.h
  132. include/ncbi/cdd.h
  133. include/ncbi/cddapi.h
  134. include/ncbi/cddposutil.h
  135. include/ncbi/cddutil.h
  136. include/ncbi/cdentrez.h
  137. include/ncbi/cdnewlib.h
  138. include/ncbi/cdrgn.h
  139. include/ncbi/cdrom.h
  140. include/ncbi/cdromlib.h
  141. include/ncbi/cn3d.h
  142. include/ncbi/cn3dentr.h
  143. include/ncbi/cn3dmain.h
  144. include/ncbi/cn3dmesh.h
  145. include/ncbi/cn3dmodl.h
  146. include/ncbi/cn3dmsel.h
  147. include/ncbi/cn3dmsg.h
  148. include/ncbi/cn3dopen.h
  149. include/ncbi/cn3dsave.h
  150. include/ncbi/cn3dshim.h
  151. include/ncbi/cn3dstyl.h
  152. include/ncbi/cn3dxprt.h
  153. include/ncbi/codon.h
  154. include/ncbi/compo_heap.h
  155. include/ncbi/compo_mode_condition.h
  156. include/ncbi/composition_adjustment.h
  157. include/ncbi/composition_constants.h
  158. include/ncbi/connect/connect_export.h
  159. include/ncbi/connect/ncbi_ansi_ext.h
  160. include/ncbi/connect/ncbi_assert.h
  161. include/ncbi/connect/ncbi_base64.h
  162. include/ncbi/connect/ncbi_buffer.h
  163. include/ncbi/connect/ncbi_comm.h
  164. include/ncbi/connect/ncbi_config.h
  165. include/ncbi/connect/ncbi_connection.h
  166. include/ncbi/connect/ncbi_connector.h
  167. include/ncbi/connect/ncbi_connssl.h
  168. include/ncbi/connect/ncbi_connutil.h
  169. include/ncbi/connect/ncbi_core.h
  170. include/ncbi/connect/ncbi_core_c.h
  171. include/ncbi/connect/ncbi_dispd.h
  172. include/ncbi/connect/ncbi_file_connector.h
  173. include/ncbi/connect/ncbi_ftp_connector.h
  174. include/ncbi/connect/ncbi_gnutls.h
  175. include/ncbi/connect/ncbi_heapmgr.h
  176. include/ncbi/connect/ncbi_host_info.h
  177. include/ncbi/connect/ncbi_host_infop.h
  178. include/ncbi/connect/ncbi_http_connector.h
  179. include/ncbi/connect/ncbi_ipv6.h
  180. include/ncbi/connect/ncbi_lb.h
  181. include/ncbi/connect/ncbi_lbos.h
  182. include/ncbi/connect/ncbi_lbosp.h
  183. include/ncbi/connect/ncbi_lbsmd.h
  184. include/ncbi/connect/ncbi_local.h
  185. include/ncbi/connect/ncbi_memory_connector.h
  186. include/ncbi/connect/ncbi_priv.h
  187. include/ncbi/connect/ncbi_sendmail.h
  188. include/ncbi/connect/ncbi_server_info.h
  189. include/ncbi/connect/ncbi_server_infop.h
  190. include/ncbi/connect/ncbi_service.h
  191. include/ncbi/connect/ncbi_service_connector.h
  192. include/ncbi/connect/ncbi_servicep.h
  193. include/ncbi/connect/ncbi_socket.h
  194. include/ncbi/connect/ncbi_socket_connector.h
  195. include/ncbi/connect/ncbi_socket_unix.h
  196. include/ncbi/connect/ncbi_socketp.h
  197. include/ncbi/connect/ncbi_types.h
  198. include/ncbi/connect/ncbi_util.h
  199. include/ncbi/connect/ncbi_version.h
  200. include/ncbi/corematx.h
  201. include/ncbi/db_list.h
  202. include/ncbi/ddvclick.h
  203. include/ncbi/ddvcolor.h
  204. include/ncbi/ddvcreate.h
  205. include/ncbi/ddvgraph.h
  206. include/ncbi/ddvmain.h
  207. include/ncbi/ddvopen.h
  208. include/ncbi/ddvpanel.h
  209. include/ncbi/diagnost.h
  210. include/ncbi/dlogutil.h
  211. include/ncbi/document.h
  212. include/ncbi/dotmatrx.h
  213. include/ncbi/dotseq.h
  214. include/ncbi/dotviewer.h
  215. include/ncbi/drawingp.h
  216. include/ncbi/drawseq.h
  217. include/ncbi/dust.h
  218. include/ncbi/dvncode.h
  219. include/ncbi/edutil.h
  220. include/ncbi/egkludge.h
  221. include/ncbi/ent2api.h
  222. include/ncbi/entrez.h
  223. include/ncbi/entrez2.h
  224. include/ncbi/errdefn.h
  225. include/ncbi/explore.h
  226. include/ncbi/fastadl.h
  227. include/ncbi/fdlKludge.h
  228. include/ncbi/fdlobj.h
  229. include/ncbi/fea2seg.h
  230. include/ncbi/ffprint.h
  231. include/ncbi/findrepl.h
  232. include/ncbi/fstyle.h
  233. include/ncbi/fstylep.h
  234. include/ncbi/ftusrstr.h
  235. include/ncbi/gapxdrop.h
  236. include/ncbi/gather.h
  237. include/ncbi/gbfeat.h
  238. include/ncbi/gbftdef.h
  239. include/ncbi/gbparlex.h
  240. include/ncbi/gifgen.h
  241. include/ncbi/glbpic.h
  242. include/ncbi/gphdraw.h
  243. include/ncbi/gtrdraw.h
  244. include/ncbi/gxydraw.h
  245. include/ncbi/id1.h
  246. include/ncbi/id1arch.h
  247. include/ncbi/id1gen.h
  248. include/ncbi/id1map.h
  249. include/ncbi/id2.h
  250. include/ncbi/id2gen.h
  251. include/ncbi/id2map.h
  252. include/ncbi/id2sgen.h
  253. include/ncbi/image.h
  254. include/ncbi/imagelst.h
  255. include/ncbi/import.h
  256. include/ncbi/ingenext.h
  257. include/ncbi/ingengraph.h
  258. include/ncbi/ingenwin.h
  259. include/ncbi/jsavlt.h
  260. include/ncbi/jzcoll.h
  261. include/ncbi/jzmisc.h
  262. include/ncbi/layout.h
  263. include/ncbi/legend.h
  264. include/ncbi/list.h
  265. include/ncbi/lnfac.h
  266. include/ncbi/lookup.h
  267. include/ncbi/lsqfetch.h
  268. include/ncbi/macroapi.h
  269. include/ncbi/macrodlg.h
  270. include/ncbi/mapcn3d.h
  271. include/ncbi/mapgene.h
  272. include/ncbi/mapmime.h
  273. include/ncbi/mapmla.h
  274. include/ncbi/mappingp.h
  275. include/ncbi/mapproj.h
  276. include/ncbi/mappubme.h
  277. include/ncbi/maputil.h
  278. include/ncbi/matrix.h
  279. include/ncbi/matrix_frequency_data.h
  280. include/ncbi/mbalign.h
  281. include/ncbi/mblast.h
  282. include/ncbi/mconsist.h
  283. include/ncbi/mdrcherr.h
  284. include/ncbi/medarch.h
  285. include/ncbi/medutil.h
  286. include/ncbi/medview.h
  287. include/ncbi/mimapi.h
  288. include/ncbi/mkbioseq.h
  289. include/ncbi/mla2api.h
  290. include/ncbi/mlkludge.h
  291. include/ncbi/mmdb1.h
  292. include/ncbi/mmdb2.h
  293. include/ncbi/mmdb3.h
  294. include/ncbi/mmdbapi.h
  295. include/ncbi/mmdbapi1.h
  296. include/ncbi/mmdbapi2.h
  297. include/ncbi/mmdbapi3.h
  298. include/ncbi/mmdbapi4.h
  299. include/ncbi/mmdbdata.h
  300. include/ncbi/mmdblocl.h
  301. include/ncbi/motif.h
  302. include/ncbi/ncbi.h
  303. include/ncbi/ncbi_skew_guard.h
  304. include/ncbi/ncbibs.h
  305. include/ncbi/ncbidraw.h
  306. include/ncbi/ncbienv.h
  307. include/ncbi/ncbierr.h
  308. include/ncbi/ncbifile.h
  309. include/ncbi/ncbigif.h
  310. include/ncbi/ncbilang.h
  311. include/ncbi/ncbilcl.h
  312. include/ncbi/ncbimain.h
  313. include/ncbi/ncbimath.h
  314. include/ncbi/ncbimem.h
  315. include/ncbi/ncbimisc.h
  316. include/ncbi/ncbimsg.h
  317. include/ncbi/ncbinet.h
  318. include/ncbi/ncbiopt.h
  319. include/ncbi/ncbiport.h
  320. include/ncbi/ncbiprop.h
  321. include/ncbi/ncbisam.h
  322. include/ncbi/ncbisami.h
  323. include/ncbi/ncbisgml.h
  324. include/ncbi/ncbisort.h
  325. include/ncbi/ncbisrti.h
  326. include/ncbi/ncbistd.h
  327. include/ncbi/ncbistr.h
  328. include/ncbi/ncbithr.h
  329. include/ncbi/ncbitime.h
  330. include/ncbi/ncbiwin.h
  331. include/ncbi/ncbiwww.h
  332. include/ncbi/needleman.h
  333. include/ncbi/netblap3.h
  334. include/ncbi/netcnfg.h
  335. include/ncbi/netentr.h
  336. include/ncbi/netlib.h
  337. include/ncbi/netpriv.h
  338. include/ncbi/netscape.h
  339. include/ncbi/ni_error.h
  340. include/ncbi/ni_lib_.h
  341. include/ncbi/ni_types.h
  342. include/ncbi/nlm_linear_algebra.h
  343. include/ncbi/objacces.h
  344. include/ncbi/objalign.h
  345. include/ncbi/objalignloc.h
  346. include/ncbi/objall.h
  347. include/ncbi/objbibli.h
  348. include/ncbi/objblock.h
  349. include/ncbi/objblst3.h
  350. include/ncbi/objcdd.h
  351. include/ncbi/objcn3d.h
  352. include/ncbi/objcode.h
  353. include/ncbi/objegkludge.h
  354. include/ncbi/objent2.h
  355. include/ncbi/objentgene.h
  356. include/ncbi/objentr.h
  357. include/ncbi/objfdef.h
  358. include/ncbi/objfeat.h
  359. include/ncbi/objgbseq.h
  360. include/ncbi/objgen.h
  361. include/ncbi/objinsdseq.h
  362. include/ncbi/objloc.h
  363. include/ncbi/objmacro.h
  364. include/ncbi/objmdrs.h
  365. include/ncbi/objmedli.h
  366. include/ncbi/objmgr.h
  367. include/ncbi/objmim.h
  368. include/ncbi/objmime.h
  369. include/ncbi/objmla.h
  370. include/ncbi/objmla2.h
  371. include/ncbi/objmmdb1.h
  372. include/ncbi/objmmdb2.h
  373. include/ncbi/objmmdb3.h
  374. include/ncbi/objneten.h
  375. include/ncbi/objproj.h
  376. include/ncbi/objprt.h
  377. include/ncbi/objpub.h
  378. include/ncbi/objpubd.h
  379. include/ncbi/objpubme.h
  380. include/ncbi/objres.h
  381. include/ncbi/objscoremat.h
  382. include/ncbi/objseq.h
  383. include/ncbi/objspell.h
  384. include/ncbi/objsset.h
  385. include/ncbi/objsub.h
  386. include/ncbi/objtable.h
  387. include/ncbi/objtax1.h
  388. include/ncbi/objtax3.h
  389. include/ncbi/objtseq.h
  390. include/ncbi/objvalid.h
  391. include/ncbi/odlbox.h
  392. include/ncbi/optimize_target_freq.h
  393. include/ncbi/panels.h
  394. include/ncbi/parsegb.h
  395. include/ncbi/pcre.h
  396. include/ncbi/pcre_config.h
  397. include/ncbi/pcre_internal.h
  398. include/ncbi/pcreposix.h
  399. include/ncbi/pdiagnos.h
  400. include/ncbi/pgppop.h
  401. include/ncbi/pictur3d.h
  402. include/ncbi/picture.h
  403. include/ncbi/picturep.h
  404. include/ncbi/pmfapi.h
  405. include/ncbi/pobutil.h
  406. include/ncbi/posit.h
  407. include/ncbi/ppict3d.h
  408. include/ncbi/profiles.h
  409. include/ncbi/prtgene.h
  410. include/ncbi/prtutil.h
  411. include/ncbi/prunebsc.h
  412. include/ncbi/pubdesc.h
  413. include/ncbi/puberr.h
  414. include/ncbi/qblastapi.h
  415. include/ncbi/readdb.h
  416. include/ncbi/redo_alignment.h
  417. include/ncbi/regex.h
  418. include/ncbi/rpsutil.h
  419. include/ncbi/saldist.h
  420. include/ncbi/saled.h
  421. include/ncbi/saledit.h
  422. include/ncbi/salfiles.h
  423. include/ncbi/salign.h
  424. include/ncbi/salmedia.h
  425. include/ncbi/salogif.h
  426. include/ncbi/salpacc.h
  427. include/ncbi/salpanel.h
  428. include/ncbi/salparam.h
  429. include/ncbi/salpedit.h
  430. include/ncbi/salprop.h
  431. include/ncbi/salpstat.h
  432. include/ncbi/salptool.h
  433. include/ncbi/salsa.h
  434. include/ncbi/salsap.h
  435. include/ncbi/salstruc.h
  436. include/ncbi/salutil.h
  437. include/ncbi/samutil.h
  438. include/ncbi/satutil.h
  439. include/ncbi/scoremat.h
  440. include/ncbi/sdisplay.h
  441. include/ncbi/sec.h
  442. include/ncbi/seed.h
  443. include/ncbi/seg.h
  444. include/ncbi/seqanal.h
  445. include/ncbi/seqcons.h
  446. include/ncbi/seqfltr.h
  447. include/ncbi/seqgraph.h
  448. include/ncbi/seqgrphx.h
  449. include/ncbi/seqmgr.h
  450. include/ncbi/seqmtrx.h
  451. include/ncbi/seqpanel.h
  452. include/ncbi/seqpcc.h
  453. include/ncbi/seqport.h
  454. include/ncbi/seqscrl.h
  455. include/ncbi/seqsplit.h
  456. include/ncbi/seqsub.h
  457. include/ncbi/sequtil.h
  458. include/ncbi/shim3d.h
  459. include/ncbi/showalignwrap.h
  460. include/ncbi/simple.h
  461. include/ncbi/simutil.h
  462. include/ncbi/smith_waterman.h
  463. include/ncbi/spell.h
  464. include/ncbi/spellapi.h
  465. include/ncbi/spidey.h
  466. include/ncbi/splutil.h
  467. include/ncbi/sqnutils.h
  468. include/ncbi/strimprt.h
  469. include/ncbi/strucapi.h
  470. include/ncbi/stsutil.h
  471. include/ncbi/subutil.h
  472. include/ncbi/suggapi.h
  473. include/ncbi/suggen.h
  474. include/ncbi/suggest.h
  475. include/ncbi/suggslp.h
  476. include/ncbi/sugmap.h
  477. include/ncbi/sugprefx.h
  478. include/ncbi/tax1map.h
  479. include/ncbi/tax3api.h
  480. include/ncbi/taxblast.h
  481. include/ncbi/taxext.h
  482. include/ncbi/taxinc.h
  483. include/ncbi/taxon1.h
  484. include/ncbi/taxuerr.h
  485. include/ncbi/taxutil.h
  486. include/ncbi/terr.h
  487. include/ncbi/tfuns.h
  488. include/ncbi/thrdatd.h
  489. include/ncbi/thrddecl.h
  490. include/ncbi/toasn3.h
  491. include/ncbi/tofasta.h
  492. include/ncbi/tofile.h
  493. include/ncbi/tomedlin.h
  494. include/ncbi/toporg.h
  495. include/ncbi/tree.h
  496. include/ncbi/treemgr.h
  497. include/ncbi/treeview.h
  498. include/ncbi/treevint.h
  499. include/ncbi/tsprintf.h
  500. include/ncbi/txalign.h
  501. include/ncbi/txclient.h
  502. include/ncbi/txcommon.h
  503. include/ncbi/udvdef.h
  504. include/ncbi/udviewer.h
  505. include/ncbi/udvseq.h
  506. include/ncbi/undefwin.h
  507. include/ncbi/unified_pvalues.h
  508. include/ncbi/urkbias.h
  509. include/ncbi/urkcnsrt.h
  510. include/ncbi/urkdust.h
  511. include/ncbi/urkepi.h
  512. include/ncbi/urkfltr.h
  513. include/ncbi/urkgraph.h
  514. include/ncbi/urkpcc.h
  515. include/ncbi/urkptpf.h
  516. include/ncbi/urksigu.h
  517. include/ncbi/urktree.h
  518. include/ncbi/urkutil.h
  519. include/ncbi/urlquery.h
  520. include/ncbi/utilpars.h
  521. include/ncbi/utilpub.h
  522. include/ncbi/valapi.h
  523. include/ncbi/valdlg.h
  524. include/ncbi/valid.h
  525. include/ncbi/validatr.h
  526. include/ncbi/validerr.h
  527. include/ncbi/vast2cn3d.h
  528. include/ncbi/vast2mage.h
  529. include/ncbi/vast2pdb.h
  530. include/ncbi/vastlocl.h
  531. include/ncbi/vastsrv.h
  532. include/ncbi/vecscnapi.h
  533. include/ncbi/vecscrn.h
  534. include/ncbi/vibdefns.h
  535. include/ncbi/vibfltr.h
  536. include/ncbi/vibforms.h
  537. include/ncbi/vibgraph.h
  538. include/ncbi/vibincld.h
  539. include/ncbi/vibmain.h
  540. include/ncbi/vibmouse.h
  541. include/ncbi/vibpcc.h
  542. include/ncbi/vibprocs.h
  543. include/ncbi/vibrant.h
  544. include/ncbi/vibrgb.h
  545. include/ncbi/vibtree.h
  546. include/ncbi/vibtypes.h
  547. include/ncbi/viewer.h
  548. include/ncbi/viewer3d.h
  549. include/ncbi/viewerp.h
  550. include/ncbi/viewmgr.h
  551. include/ncbi/vsm.h
  552. include/ncbi/vsmfile.h
  553. include/ncbi/vsmpriv.h
  554. include/ncbi/vsmutil.h
  555. include/ncbi/wwwblast.h
  556. include/ncbi/xmlblast.h
  557. lib/ncbi/libblast.a
  558. lib/ncbi/libblastapi.a
  559. lib/ncbi/libblastcompadj.a
  560. lib/ncbi/libconnssl.a
  561. lib/ncbi/libddvlib.a
  562. lib/ncbi/libncbi.a
  563. lib/ncbi/libncbiCacc.a
  564. lib/ncbi/libncbiNacc.a
  565. lib/ncbi/libncbiacc.a
  566. lib/ncbi/libncbicdr.a
  567. lib/ncbi/libncbicn3d.a
  568. lib/ncbi/libncbidesk.a
  569. lib/ncbi/libncbiid1.a
  570. lib/ncbi/libncbimla.a
  571. lib/ncbi/libncbimmdb.a
  572. lib/ncbi/libncbiobj.a
  573. lib/ncbi/libncbitool.a
  574. lib/ncbi/libncbitxc2.a
  575. lib/ncbi/libnetblast.a
  576. lib/ncbi/libnetcli.a
  577. lib/ncbi/libnetentr.a
  578. lib/ncbi/libregexp.a
  579. lib/ncbi/libvibgif.a
  580. lib/ncbi/libvibnet.a
  581. lib/ncbi/libvibrant.a
  582. man/man1/Psequin.1.gz
  583. man/man1/asn2all.1.gz
  584. man/man1/asn2asn.1.gz
  585. man/man1/asn2ff.1.gz
  586. man/man1/asn2fsa.1.gz
  587. man/man1/asn2gb.1.gz
  588. man/man1/asn2idx.1.gz
  589. man/man1/asn2xml.1.gz
  590. man/man1/asndhuff.1.gz
  591. man/man1/asndisc.1.gz
  592. man/man1/asnmacro.1.gz
  593. man/man1/asntool.1.gz
  594. man/man1/asnval.1.gz
  595. man/man1/blastcl3.1.gz
  596. man/man1/cdscan.1.gz
  597. man/man1/checksub.1.gz
  598. man/man1/cleanasn.1.gz
  599. man/man1/ddv.1.gz
  600. man/man1/debruijn.1.gz
  601. man/man1/entrez2.1.gz
  602. man/man1/errhdr.1.gz
  603. man/man1/fa2htgs.1.gz
  604. man/man1/findspl.1.gz
  605. man/man1/fmerge.1.gz
  606. man/man1/gbseqget.1.gz
  607. man/man1/gene2xml.1.gz
  608. man/man1/getmesh.1.gz
  609. man/man1/getpub.1.gz
  610. man/man1/gil2bin.1.gz
  611. man/man1/idfetch.1.gz
  612. man/man1/indexpub.1.gz
  613. man/man1/insdseqget.1.gz
  614. man/man1/makeset.1.gz
  615. man/man1/nps2gps.1.gz
  616. man/man1/sbtedit.1.gz
  617. man/man1/sortbyquote.1.gz
  618. man/man1/spidey.1.gz
  619. man/man1/subfuse.1.gz
  620. man/man1/tbl2asn.1.gz
  621. man/man1/trna2sap.1.gz
  622. man/man1/trna2tbl.1.gz
  623. man/man1/udv.1.gz
  624. man/man1/vecscreen.1.gz
  625. share/doc/ncbi-toolkit/FAQ.txt
  626. share/doc/ncbi-toolkit/README.asn2xml
  627. share/doc/ncbi-toolkit/README.sdk
  628. share/doc/ncbi-toolkit/access.txt
  629. share/doc/ncbi-toolkit/asn2gb.txt
  630. share/doc/ncbi-toolkit/asn2gph.txt
  631. share/doc/ncbi-toolkit/blast/filter.html
  632. share/doc/ncbi-toolkit/blast/netblast.html
  633. share/doc/ncbi-toolkit/dispatcher.html
  634. share/doc/ncbi-toolkit/fa2htgs/README
  635. share/doc/ncbi-toolkit/fa2htgs/updateHtgsDoc
  636. share/doc/ncbi-toolkit/firedialog.gif
  637. share/doc/ncbi-toolkit/firewall.html
  638. share/doc/ncbi-toolkit/fwd_check.sh
  639. share/doc/ncbi-toolkit/gene2xml.txt
  640. share/doc/ncbi-toolkit/images/affil.png
  641. share/doc/ncbi-toolkit/images/annot.png
  642. share/doc/ncbi-toolkit/images/authors.png
  643. share/doc/ncbi-toolkit/images/cds_edit.png
  644. share/doc/ncbi-toolkit/images/contact.png
  645. share/doc/ncbi-toolkit/images/desktop.png
  646. share/doc/ncbi-toolkit/images/format.png
  647. share/doc/ncbi-toolkit/images/genbank.png
  648. share/doc/ncbi-toolkit/images/graphic.png
  649. share/doc/ncbi-toolkit/images/loc_page.png
  650. share/doc/ncbi-toolkit/images/logo.png
  651. share/doc/ncbi-toolkit/images/ncbi_sequin.css
  652. share/doc/ncbi-toolkit/images/net_cfg.png
  653. share/doc/ncbi-toolkit/images/nucaln.png
  654. share/doc/ncbi-toolkit/images/nucset.png
  655. share/doc/ncbi-toolkit/images/nucsing1.png
  656. share/doc/ncbi-toolkit/images/nucsing2.png
  657. share/doc/ncbi-toolkit/images/organism.png
  658. share/doc/ncbi-toolkit/images/props_pg.png
  659. share/doc/ncbi-toolkit/images/protein1.png
  660. share/doc/ncbi-toolkit/images/protein2.png
  661. share/doc/ncbi-toolkit/images/sequence.png
  662. share/doc/ncbi-toolkit/images/submit.png
  663. share/doc/ncbi-toolkit/images/update.png
  664. share/doc/ncbi-toolkit/images/validate.png
  665. share/doc/ncbi-toolkit/images/welcome.png
  666. share/doc/ncbi-toolkit/ncbixml.txt
  667. share/doc/ncbi-toolkit/sdk.doc
  668. share/doc/ncbi-toolkit/seq_install/Makefile
  669. share/doc/ncbi-toolkit/seq_install/bg.gif
  670. share/doc/ncbi-toolkit/seq_install/ftp_example.css
  671. share/doc/ncbi-toolkit/seq_install/ftp_example.xml
  672. share/doc/ncbi-toolkit/seq_install/left.GIF
  673. share/doc/ncbi-toolkit/seq_install/mac-ie.css
  674. share/doc/ncbi-toolkit/seq_install/mac-netscape.css
  675. share/doc/ncbi-toolkit/seq_install/main.xslt
  676. share/doc/ncbi-toolkit/seq_install/ncbi_sequin.css
  677. share/doc/ncbi-toolkit/seq_install/seq_download.css
  678. share/doc/ncbi-toolkit/seq_install/seq_download.html
  679. share/doc/ncbi-toolkit/seq_install/seq_download.xml
  680. share/doc/ncbi-toolkit/seq_install/seq_ftp_download.css
  681. share/doc/ncbi-toolkit/seq_install/seq_ftp_download.html
  682. share/doc/ncbi-toolkit/seq_install/seq_ftp_download.xml
  683. share/doc/ncbi-toolkit/seq_install/seq_install.html
  684. share/doc/ncbi-toolkit/seq_install/seq_mac_download.css
  685. share/doc/ncbi-toolkit/seq_install/seq_mac_download.html
  686. share/doc/ncbi-toolkit/seq_install/seq_mac_download.xml
  687. share/doc/ncbi-toolkit/seq_install/seq_trouble.css
  688. share/doc/ncbi-toolkit/seq_install/seq_trouble.html
  689. share/doc/ncbi-toolkit/seq_install/seq_trouble.xml
  690. share/doc/ncbi-toolkit/seq_install/seq_unix_download.css
  691. share/doc/ncbi-toolkit/seq_install/seq_unix_download.html
  692. share/doc/ncbi-toolkit/seq_install/seq_unix_download.xml
  693. share/doc/ncbi-toolkit/seq_install/seq_win_download.css
  694. share/doc/ncbi-toolkit/seq_install/seq_win_download.html
  695. share/doc/ncbi-toolkit/seq_install/seq_win_download.xml
  696. share/doc/ncbi-toolkit/seq_install/sequin-icon-win.gif
  697. share/doc/ncbi-toolkit/seq_install/sniff.js
  698. share/doc/ncbi-toolkit/seq_install/spacer10.GIF
  699. share/doc/ncbi-toolkit/seq_install/template.xml
  700. share/doc/ncbi-toolkit/seq_install/win-ie.css
  701. share/doc/ncbi-toolkit/seq_install/win-ie3.css
  702. share/doc/ncbi-toolkit/seq_install/win-netscape.css
  703. share/doc/ncbi-toolkit/sequin.htm
  704. share/doc/ncbi-toolkit/tbl2asn.txt
  705. share/ncbi-toolkit/16SCore.nhr
  706. share/ncbi-toolkit/16SCore.nin
  707. share/ncbi-toolkit/16SCore.nsq
  708. share/ncbi-toolkit/64-matK-FINAL-aligned-DNA.fas.nhr
  709. share/ncbi-toolkit/64-matK-FINAL-aligned-DNA.fas.nin
  710. share/ncbi-toolkit/64-matK-FINAL-aligned-DNA.fas.nsq
  711. share/ncbi-toolkit/64-rbcL-FINAL-aligned-DNA.fas.nhr
  712. share/ncbi-toolkit/64-rbcL-FINAL-aligned-DNA.fas.nin
  713. share/ncbi-toolkit/64-rbcL-FINAL-aligned-DNA.fas.nsq
  714. share/ncbi-toolkit/BLOSUM45
  715. share/ncbi-toolkit/BLOSUM50
  716. share/ncbi-toolkit/BLOSUM62
  717. share/ncbi-toolkit/BLOSUM80
  718. share/ncbi-toolkit/BLOSUM90
  719. share/ncbi-toolkit/Combined16SrRNA.nhr
  720. share/ncbi-toolkit/Combined16SrRNA.nin
  721. share/ncbi-toolkit/Combined16SrRNA.nsq
  722. share/ncbi-toolkit/Combined16SrRNA_2-12-2008.nhr
  723. share/ncbi-toolkit/Combined16SrRNA_2-12-2008.nin
  724. share/ncbi-toolkit/Combined16SrRNA_2-12-2008.nsq
  725. share/ncbi-toolkit/ContactPotential
  726. share/ncbi-toolkit/KSat.flt
  727. share/ncbi-toolkit/KSchoth.flt
  728. share/ncbi-toolkit/KSesigc.mat
  729. share/ncbi-toolkit/KSesigl.mat
  730. share/ncbi-toolkit/KSgc.flt
  731. share/ncbi-toolkit/KShopp.flt
  732. share/ncbi-toolkit/KSkyte.flt
  733. share/ncbi-toolkit/KSmtidk.mat
  734. share/ncbi-toolkit/KSmtk.mat
  735. share/ncbi-toolkit/KSnsigc.mat
  736. share/ncbi-toolkit/KSnsigl.mat
  737. share/ncbi-toolkit/KSpcc.mat
  738. share/ncbi-toolkit/KSpsigc.mat
  739. share/ncbi-toolkit/KSpsigl.mat
  740. share/ncbi-toolkit/KSpur.flt
  741. share/ncbi-toolkit/KSpyr.flt
  742. share/ncbi-toolkit/LSURef_93.fasta.nhr
  743. share/ncbi-toolkit/LSURef_93.fasta.nin
  744. share/ncbi-toolkit/LSURef_93.fasta.nsq
  745. share/ncbi-toolkit/LSU_chloro_rRNA.nhr
  746. share/ncbi-toolkit/LSU_chloro_rRNA.nin
  747. share/ncbi-toolkit/LSU_chloro_rRNA.nsq
  748. share/ncbi-toolkit/LSU_mito_rRNA.nhr
  749. share/ncbi-toolkit/LSU_mito_rRNA.nin
  750. share/ncbi-toolkit/LSU_mito_rRNA.nsq
  751. share/ncbi-toolkit/LSU_nomito-nochloro-noplastid.nhr
  752. share/ncbi-toolkit/LSU_nomito-nochloro-noplastid.nin
  753. share/ncbi-toolkit/LSU_nomito-nochloro-noplastid.nsq
  754. share/ncbi-toolkit/LSU_plastid.nhr
  755. share/ncbi-toolkit/LSU_plastid.nin
  756. share/ncbi-toolkit/LSU_plastid.nsq
  757. share/ncbi-toolkit/PAM250
  758. share/ncbi-toolkit/PAM30
  759. share/ncbi-toolkit/PAM70
  760. share/ncbi-toolkit/SSU-mito-rRNA.nhr
  761. share/ncbi-toolkit/SSU-mito-rRNA.nin
  762. share/ncbi-toolkit/SSU-mito-rRNA.nsq
  763. share/ncbi-toolkit/SSURef_93.fasta.nhr
  764. share/ncbi-toolkit/SSURef_93.fasta.nin
  765. share/ncbi-toolkit/SSURef_93.fasta.nsq
  766. share/ncbi-toolkit/SSU_chloro_rRNA.nhr
  767. share/ncbi-toolkit/SSU_chloro_rRNA.nin
  768. share/ncbi-toolkit/SSU_chloro_rRNA.nsq
  769. share/ncbi-toolkit/SSU_nomito_nochloro_noplastid.nhr
  770. share/ncbi-toolkit/SSU_nomito_nochloro_noplastid.nin
  771. share/ncbi-toolkit/SSU_nomito_nochloro_noplastid.nsq
  772. share/ncbi-toolkit/SSU_plast_rRNA.nhr
  773. share/ncbi-toolkit/SSU_plast_rRNA.nin
  774. share/ncbi-toolkit/SSU_plast_rRNA.nsq
  775. share/ncbi-toolkit/UniVec.nhr
  776. share/ncbi-toolkit/UniVec.nin
  777. share/ncbi-toolkit/UniVec.nsq
  778. share/ncbi-toolkit/UniVec_Core.nhr
  779. share/ncbi-toolkit/UniVec_Core.nin
  780. share/ncbi-toolkit/UniVec_Core.nsq
  781. share/ncbi-toolkit/asn2ff.prt
  782. share/ncbi-toolkit/autofix.prt
  783. share/ncbi-toolkit/bacteria-archea16SrRNA.nhr
  784. share/ncbi-toolkit/bacteria-archea16SrRNA.nin
  785. share/ncbi-toolkit/bacteria-archea16SrRNA.nsq
  786. share/ncbi-toolkit/blast.prt
  787. share/ncbi-toolkit/bstdt.prt
  788. share/ncbi-toolkit/bstdt.val
  789. share/ncbi-toolkit/country_lat_lon.txt
  790. share/ncbi-toolkit/ecnum_ambiguous.txt
  791. share/ncbi-toolkit/ecnum_deleted.txt
  792. share/ncbi-toolkit/ecnum_replaced.txt
  793. share/ncbi-toolkit/ecnum_specific.txt
  794. share/ncbi-toolkit/featdef.prt
  795. share/ncbi-toolkit/featdef.val
  796. share/ncbi-toolkit/gc.prt
  797. share/ncbi-toolkit/gc.val
  798. share/ncbi-toolkit/humrep.fsa
  799. share/ncbi-toolkit/institution_codes.txt
  800. share/ncbi-toolkit/lat_lon_country.txt
  801. share/ncbi-toolkit/lat_lon_island.txt
  802. share/ncbi-toolkit/lat_lon_water.txt
  803. share/ncbi-toolkit/lineages.txt
  804. share/ncbi-toolkit/makerpt.prt
  805. share/ncbi-toolkit/ncbiendo.dat
  806. share/ncbi-toolkit/ncbipnam.dat
  807. share/ncbi-toolkit/ncbipros.dat
  808. share/ncbi-toolkit/ncbiren.dat
  809. share/ncbi-toolkit/ncbirnam.dat
  810. share/ncbi-toolkit/objprt.prt
  811. share/ncbi-toolkit/organelle_products.prt
  812. share/ncbi-toolkit/product_rules.prt
  813. share/ncbi-toolkit/pubkey.enc
  814. share/ncbi-toolkit/rRNA_blast.nal
  815. share/ncbi-toolkit/rRNAstrand.nal
  816. share/ncbi-toolkit/seqcode.prt
  817. share/ncbi-toolkit/seqcode.val
  818. share/ncbi-toolkit/sequin.hlp
  819. share/ncbi-toolkit/sgmlbb.ent
  820. share/ncbi-toolkit/taxlist.txt
  821. share/ncbi-toolkit/validrules.prt
  822. Collapse this list.

Dependency line: ncbi-toolkit>0:biology/ncbi-toolkit


To install the port: cd /usr/ports/biology/ncbi-toolkit/ && make install clean
To add the package: pkg install ncbi-toolkit

PKGNAME: ncbi-toolkit

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1538934016
SHA256 (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 4b88aaad8f953b1b50bc7d06f3a5920f0d589d2c9a26c709199f8347905f5867
SIZE (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 155731358


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. x11.pc : x11/libX11
  2. xau.pc : x11/libXau
  3. xext.pc : x11/libXext
  4. xft.pc : x11-fonts/libXft
  5. xmu.pc : x11-toolkits/libXmu
  6. xrender.pc : x11/libXrender
  7. xt.pc : x11-toolkits/libXt
  8. xpm.pc : x11/libXpm
Runtime dependencies:
  1. x11.pc : x11/libX11
  2. xau.pc : x11/libXau
  3. xext.pc : x11/libXext
  4. xft.pc : x11-fonts/libXft
  5. xmu.pc : x11-toolkits/libXmu
  6. xrender.pc : x11/libXrender
  7. xt.pc : x11-toolkits/libXt
  8. xpm.pc : x11/libXpm
Library dependencies:
  1. libfontconfig.so : x11-fonts/fontconfig
  2. libgmp.so : math/gmp
  3. libgnutls.so : security/gnutls
  4. libhogweed.so : security/nettle
  5. libidn2.so : dns/libidn2
  6. libnettle.so : security/nettle
  7. libp11-kit.so : security/p11-kit
  8. libpng.so : graphics/png
  9. libtasn1.so : security/libtasn1
  10. libtspi.so : security/trousers
  11. libunistring.so : devel/libunistring
  12. libXp.so : x11/libXp
  13. libintl.so : devel/gettext-runtime
  14. libiconv.so : converters/libiconv
  15. libjpeg.so : graphics/jpeg-turbo
  16. libXm.so.4 : x11-toolkits/open-motif

This port is required by:

for Build * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
===> The following configuration options are available for ncbi-toolkit-2017.01.06_1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
gettext-runtime iconv jpeg motif

Master Sites:
  1. ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20170106/

Number of commits found: 47

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Jan 2019 20:39:43
Original commit files touched by this commit  2017.01.06_1
Revision:489529
sunpoet search for other commits by this committer
Update dns/libidn2 to 2.1.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://gitlab.com/libidn/libidn2/blob/master/NEWS
05 Nov 2018 19:47:43
Original commit files touched by this commit  2017.01.06
Revision:484211
linimon search for other commits by this committer
Fix build failure with base GCC because of double typedefs.

PR:		232457
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)
07 Oct 2018 18:29:17
Original commit files touched by this commit  2017.01.06
Revision:481472
yuri search for other commits by this committer
biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06

Port changes:
* Take maintainership
* Add to LIB_DEPENDS and USExx
* Remove lists of executables and manpages, use file listing instead (*)
* Update WWW
08 Dec 2016 16:39:11
Original commit files touched by this commit  2012.06.20_1
Revision:428135
tijl search for other commits by this committer
Remove libjpeg.so.11 compatibility link that was added in r374303 to
prevent massive PORTREVISION bumps.  Bump dependent ports that have not
been bumped since.
02 Nov 2016 22:45:14
Original commit files touched by this commit  2012.06.20
Revision:425174
mat search for other commits by this committer
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
24 Jun 2016 09:04:45
Original commit files touched by this commit  2012.06.20
Revision:417414
amdmi3 search for other commits by this committer
- Add missing dependency, fixing build
- Switch to options helpers
20 Oct 2014 07:10:48
Original commit files touched by this commit  2012.06.20
Revision:371237
bapt search for other commits by this committer
Cleanup plist
23 Mar 2014 20:50:54
Original commit files touched by this commit  2012.06.20
Revision:348888
pawel search for other commits by this committer
Add staging support
20 Sep 2013 15:55:44
Original commit files touched by this commit  2012.06.20
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
04 Sep 2013 18:06:08
Original commit files touched by this commit  2012.06.20
Revision:326307
madpilot search for other commits by this committer
- Make ports use the libc provided iconv implementation on 10-CURRENT
  after r254273
- Fix a bunch of ports to properly work after this
- Mark converters/libiconv as IGNORE for systems with iconv in libc

Reviewed by:	bapt
Approved by:	portmgr (bapt)
Discussed with:	bapt, bsam (who both contributed ideas and code)
09 Jul 2013 21:49:36
Original commit files touched by this commit  2012.06.20
Revision:322587
bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
14 Mar 2013 05:27:58
Original commit files touched by this commit  2012.06.20
Revision:314129
miwi search for other commits by this committer
- Update to 2012.06.20

PR:		176544
Submitted by:	Ports Fury
01 Oct 2012 14:45:17
Original commit files touched by this commit  2009.03.01_1
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
22 Oct 2011 23:50:23
Original commit files touched by this commit  2009.03.01_1
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
02 May 2011 12:41:44
Original commit files touched by this commit  2009.03.01_1
makc search for other commits by this committer
Fix build with open-motif-2.3.3

PR:             ports/154044
Submitted by:   Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:    pav
19 Mar 2011 12:38:54
Original commit files touched by this commit  2009.03.01
miwi search for other commits by this committer
- Get Rid MD5 support
31 Jan 2010 03:42:20
Original commit files touched by this commit  2009.03.01
pgollucci search for other commits by this committer
- use $SUB_FILES to dynamically adjust pkg-message

PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    fernan@iib.unsam.edu.ar (maintainer)
28 Mar 2009 16:59:39
Original commit files touched by this commit  2009.03.01
miwi search for other commits by this committer
- Update to 2009.03.01

PR:             133099
Submitted by:   Fernan Aguero <fernan.aguero@gmail.com>
Approved by:    maintainer
19 Apr 2008 17:56:05
Original commit files touched by this commit  2006.05.07_1
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
19 May 2007 20:32:57
Original commit files touched by this commit  2006.05.07_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
09 Dec 2006 07:48:18
Original commit files touched by this commit  2006.05.07
rafan search for other commits by this committer
- Respect X11BASE

Approved by:    portmgr (linimon)
06 Jun 2006 12:05:19
Original commit files touched by this commit  2006.05.07
itetcu search for other commits by this committer
Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
 blastall now uses the new engine by default, resulting
 in significant performance improvements and enabling
 query concatenation for all program types.

PR:             ports/98570
Submitted by:   maintainer
Approved by:    lawrance (mentor, implict)
22 Jan 2006 01:25:24
Original commit files touched by this commit  2005.12.06
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
14 Jan 2006 19:34:43
Original commit files touched by this commit  2005.12.06
pav search for other commits by this committer
- Update to 2005.12.06

PR:             ports/91714
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
11 Oct 2005 22:33:35
Original commit files touched by this commit  2005.06.05
sem search for other commits by this committer
- Update to 20050605

PR:             ports/87266
Submitted by:   maintainer
14 Sep 2005 09:24:04
Original commit files touched by this commit  2004.10.20_1
vs search for other commits by this committer
Don't strip static libraries on installation ;)
(Unbreaks e.g. biology/nclever)
20 Mar 2005 11:47:59
Original commit files touched by this commit  2004.10.20
pav search for other commits by this committer
- Fix man page damage I did last night

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
19 Mar 2005 21:32:13
Original commit files touched by this commit  2004.10.20
pav search for other commits by this committer
- Update to 2.2.10 from 20041020
- Transfer maintainership

PR:             ports/67735
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
01 Nov 2004 22:21:02
Original commit files touched by this commit  2004.06.16
pav search for other commits by this committer
- Update to 2004.06.16

Inspired by:    ports/72726
Approved by:    maintainer timeout (2 weeks)
13 Nov 2003 14:45:08
Original commit files touched by this commit  2003.04.21
trevor search for other commits by this committer
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
22 Oct 2003 09:29:55
Original commit files touched by this commit  2003.04.21
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
05 May 2003 12:24:08
Original commit files touched by this commit  2003.04.21
arved search for other commits by this committer
Update to 2003.04.21

PR:             51709
Submitted by:   Tony Maher <tonymaher@optushome.com.au>
21 Feb 2003 11:01:38
Original commit files touched by this commit  2002.04.26
knu search for other commits by this committer
De-pkg-comment.
21 Sep 2002 14:56:18
Original commit files touched by this commit  2002.04.26
ijliao search for other commits by this committer
add forgotten "USE_REINPLACE=yes"

Submitted by:   maintainer
21 Sep 2002 06:59:28
Original commit files touched by this commit  2002.04.26
ijliao search for other commits by this committer
upgrade to 20020426

PR:             39357
Submitted by:   maintainer
08 Jun 2002 00:40:10
Original commit files touched by this commit  2001.12.20
petef search for other commits by this committer
Correct MASTER_SITES.

PR:             39016
Submitted by:   maintainer
22 Feb 2002 07:57:07
Original commit files touched by this commit
pat search for other commits by this committer
Update to 2001.12.20    
19 Sep 2001 14:03:18
Original commit files touched by this commit
wjv search for other commits by this committer
- Add installation of include files   - Bump PORTREVISION    
06 Aug 2001 11:50:02
Original commit files touched by this commit
wjv search for other commits by this committer
Update maintainer's email address.    
10 Jul 2001 17:35:08
Original commit files touched by this commit
fenner search for other commits by this committer
Update Tony Maher's email address.    
20 Jun 2001 15:25:55
Original commit files touched by this commit
wjv search for other commits by this committer
Update to version 2001.04.03; add installation of some documentation.    
18 Dec 2000 20:32:56
Original commit files touched by this commit
demon search for other commits by this committer
Remove trailing period and package name from the pkg-comment.    
15 Nov 2000 00:54:09
Original commit files touched by this commit
jeh search for other commits by this committer
They made changes to the "blast" program.    
07 Nov 2000 23:28:20
Original commit files touched by this commit
asami search for other commits by this committer
Change motif to a normal dependency.  REQUIRES_MOTIF is now called   USE_MOTIF
and generates a LIB_DEPENDS to x11-toolkits/open-motif.  As   before, it implies
USE_XPM (and therefore USE_XLIB).  Motif-dummy is   removed from
PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3.    
03 Nov 2000 13:23:15
Original commit files touched by this commit
jeh search for other commits by this committer
Yes.  They did re-roll this version, it is legit.   They donot version the dist,
but store them in versioned dir.  Update    Makefile to handle that.   Update
CHECKSUM    
02 Nov 2000 11:25:50
Original commit files touched by this commit
jeh search for other commits by this committer
Updated to new version.  That is the pits, the day after it becomes   a port
they release a new version.  This is a new version, w/o a number.    
29 Oct 2000 13:56:24
Original commit files touched by this commit
jeh search for other commits by this committer
New Port: biology/ncbi-toolkit   National Center for Biotechnology Information
(NCBI) Development Toolkit.    

Number of commits found: 47

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
jenkinsJan 16
jenkins-ltsJan 16
py-matrix-synapseJan 15
irssiJan 10
giteaJan 06
uriparserJan 06
chromiumJan 05
chromiumJan 05
openjpeg*Jan 05
py-django111Jan 05
py-django20Jan 05
py-django21Jan 05
gitlab-ceJan 02
rpm4Dec 26
gitlab-ceDec 22

10 vulnerabilities affecting 54 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2019-01-16 17:44:00


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 35984
Broken 115
Deprecated 412
Ignore 328
Forbidden 3
Restricted 162
No CDROM 74
Vulnerable 33
Expired 5
Set to expire 385
Interactive 0
new 24 hours 4
new 48 hours7
new 7 days29
new fortnight80
new month158

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2019 Dan Langille. All rights reserved.