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Port details
ncbi-toolkit NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
2017.01.06_9 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2017.01.06_8Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-10-29 10:56:24
Last Update: 2024-01-12 15:11:29
Commit Hash: d432922
People watching this port, also watch:: zip, pcre, desktop-file-utils, xorg-fonts-miscbitmaps, libIDL
License: not specified in port
WWW:
https://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
Description:
The NCBI (National Center for Biotechnology Information) development toolkit, containing various libraries needed by NCBI applications, as well as a software suite containing, amongst other things, NCBI BLAST 2.0. From the README: The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. We make it freely available to the public without restriction to facilitate the use of NCBI by the scientific community. However, please understand that while we feel we have done a high quality job, this is not commercial software. The documentation lags considerably behind the software and we must make any changes required by our data production needs. Nontheless, many people have found it a useful and stable basis for a number of tools and applications.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (824 items)
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  1. bin/Nentrez
  2. bin/Psequin
  3. bin/asn2ff
  4. bin/asn2gb
  5. bin/asn2idx
  6. bin/asn2xml
  7. bin/asndhuff
  8. bin/asntool
  9. bin/blastcl3
  10. bin/cdscan
  11. bin/checksub
  12. bin/ddv
  13. bin/debruijn
  14. bin/demo_regexp
  15. bin/demo_regexp_grep
  16. bin/dosimple
  17. bin/entrcmd
  18. bin/entrez2
  19. bin/errhdr
  20. bin/fa2htgs
  21. bin/findspl
  22. bin/gene2xml
  23. bin/getmesh
  24. bin/getpub
  25. bin/gil2bin
  26. bin/idfetch
  27. bin/indexpub
  28. bin/makeset
  29. bin/ncbisort
  30. bin/sbtedit
  31. bin/seqtest
  32. bin/tbl2asn
  33. bin/test_regexp
  34. bin/testcore
  35. bin/testobj
  36. bin/testval
  37. bin/udv
  38. bin/vecscreen
  39. include/ncbi/FSpCompat.h
  40. include/ncbi/FullPath.h
  41. include/ncbi/MoreCarbonAccessors.h
  42. include/ncbi/MoreFilesExtras.h
  43. include/ncbi/MoreFilesX.h
  44. include/ncbi/Optimization.h
  45. include/ncbi/OptimizationEnd.h
  46. include/ncbi/PubStructAsn.h
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  222. include/ncbi/entrez.h
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  822. @owner
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Collapse this list.
Dependency lines:
  • ncbi-toolkit>0:biology/ncbi-toolkit
Conflicts:
CONFLICTS_INSTALL:
  • fhist
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/ncbi-toolkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-toolkit
  • pkg install ncbi-toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ncbi-toolkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1538934016 SHA256 (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 4b88aaad8f953b1b50bc7d06f3a5920f0d589d2c9a26c709199f8347905f5867 SIZE (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 155731358

Packages (timestamps in pop-ups are UTC):
ncbi-toolkit
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2017.01.06_92017.01.06_92017.01.06_62017.01.06_92017.01.06_9---
FreeBSD:13:quarterly2017.01.06_82017.01.06_8-2017.01.06_82017.01.06_82017.01.06_82017.01.06_82017.01.06_8
FreeBSD:14:latest2017.01.06_92017.01.06_92017.01.06_72017.01.06_92017.01.06_92017.01.06_7-2017.01.06_7
FreeBSD:14:quarterly2017.01.06_82017.01.06_8-2017.01.06_82017.01.06_82017.01.06_82017.01.06_82017.01.06_8
FreeBSD:15:latest2017.01.06_92017.01.06_9n/a2017.01.06_9n/a2017.01.06_92017.01.06_92017.01.06_9
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gettext-runtime>=0.22_1 : devel/gettext-runtime
  2. x11.pc : x11/libX11
  3. xau.pc : x11/libXau
  4. xext.pc : x11/libXext
  5. xft.pc : x11-fonts/libXft
  6. xmu.pc : x11-toolkits/libXmu
  7. xrender.pc : x11/libXrender
  8. xt.pc : x11-toolkits/libXt
  9. xpm.pc : x11/libXpm
Runtime dependencies:
  1. x11.pc : x11/libX11
  2. xau.pc : x11/libXau
  3. xext.pc : x11/libXext
  4. xft.pc : x11-fonts/libXft
  5. xmu.pc : x11-toolkits/libXmu
  6. xrender.pc : x11/libXrender
  7. xt.pc : x11-toolkits/libXt
  8. xpm.pc : x11/libXpm
Library dependencies:
  1. libfontconfig.so : x11-fonts/fontconfig
  2. libgmp.so : math/gmp
  3. libgnutls.so : security/gnutls
  4. libhogweed.so : security/nettle
  5. libidn2.so : dns/libidn2
  6. libnettle.so : security/nettle
  7. libp11-kit.so : security/p11-kit
  8. libpng.so : graphics/png
  9. libtasn1.so : security/libtasn1
  10. libtspi.so : security/trousers
  11. libunistring.so : devel/libunistring
  12. libintl.so : devel/gettext-runtime
  13. libjpeg.so : graphics/jpeg-turbo
  14. libXm.so.4 : x11-toolkits/open-motif
This port is required by:
for Build

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. biology/njplot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
===> The following configuration options are available for ncbi-toolkit-2017.01.06_9: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings
Options name:
biology_ncbi-toolkit
USES:
gettext-runtime iconv jpeg motif xorg
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20170106/
Collapse this list.

Number of commits found: 66

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2017.01.06_9
12 Jan 2024 15:11:29
commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1 files touched by this commit
Baptiste Daroussin (bapt) search for other commits by this committer
MANPREFIX: eliminate its usage

While here move manpages to share/man
2017.01.06_8
28 Jul 2023 17:13:17
commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f files touched by this commit
Daniel Engberg (diizzy) search for other commits by this committer
*/*: Bump jpeg-turbo users treewide

New major version 3.0.0
2017.01.06_7
26 Jul 2023 00:48:20
commit hash: 95274bf4f99c71fc056013d966aec239161dfd74commit hash: 95274bf4f99c71fc056013d966aec239161dfd74commit hash: 95274bf4f99c71fc056013d966aec239161dfd74commit hash: 95274bf4f99c71fc056013d966aec239161dfd74 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
*/*: Fix build with llvm16 on 13.2-STABLE

As like as HEAD(14.0-RELEASE) llvm16 was merged in base for 13.2-STABLE
with the OSVERSION 1302507.

- Utilize USE_CXXSTD=c++14 or similar solution where applicable
- Update conditionals to addtionally check for OSVERSION greater than
  1302507 and less than 1400000

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
2017.01.06_7
20 Jul 2023 17:42:38
commit hash: 1da1ae626f93ca16ce1874ee5ffdf77540fa2817commit hash: 1da1ae626f93ca16ce1874ee5ffdf77540fa2817commit hash: 1da1ae626f93ca16ce1874ee5ffdf77540fa2817commit hash: 1da1ae626f93ca16ce1874ee5ffdf77540fa2817 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/ncbi-toolkit: Fix build with llvm16

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
2017.01.06_7
06 Jun 2023 20:45:25
commit hash: ed5efb16c468d45308d1909e75c8c5c19cfcd708commit hash: ed5efb16c468d45308d1909e75c8c5c19cfcd708commit hash: ed5efb16c468d45308d1909e75c8c5c19cfcd708commit hash: ed5efb16c468d45308d1909e75c8c5c19cfcd708 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/ncbi-toolkit: Fix build with llvm15

Approved by:	portmgr (blanket)
2017.01.06_7
22 Oct 2022 09:36:07
commit hash: df6c65a0267a323b1adfc7dca649e9f7b649cc7ccommit hash: df6c65a0267a323b1adfc7dca649e9f7b649cc7ccommit hash: df6c65a0267a323b1adfc7dca649e9f7b649cc7ccommit hash: df6c65a0267a323b1adfc7dca649e9f7b649cc7c files touched by this commit
Daniel Engberg (diizzy) search for other commits by this committer
*/*: Bump PORTREVISION for consumers of libunistring

Reported by:	jbeich
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2017.01.06_6
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2017.01.06_6
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2017.01.06_6
29 Jun 2022 14:53:54
commit hash: b52114270fb74b73a57ab9e58cfb84f4ac0271a3commit hash: b52114270fb74b73a57ab9e58cfb84f4ac0271a3commit hash: b52114270fb74b73a57ab9e58cfb84f4ac0271a3commit hash: b52114270fb74b73a57ab9e58cfb84f4ac0271a3 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS_INSTALL in benchmarks and biology

Approved by:	portmgr (implicit)
2017.01.06_6
06 Feb 2022 18:36:07
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
2017.01.06_6
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2017.01.06_6
30 Aug 2020 03:10:24
Revision:546967Original commit files touched by this commit
novel search for other commits by this committer
Chase security/p11-kit update

After switch to meson libp11-kit.so no longer has symbols
in the LIBP11_KIT_1.0 namespace. As a workaround, bump
PORTREVISION of consumers to get those rebuilt.

See more details in the comments of the linked PR.

PR:		248819
Reported by:	John Hein
2017.01.06_5
16 May 2020 10:51:33
Revision:535391Original commit files touched by this commit
sunpoet search for other commits by this committer
Bump PORTREVISION for security/nettle shlib change
2017.01.06_4
28 Sep 2019 10:52:57
Revision:513114Original commit files touched by this commit
zeising search for other commits by this committer
biologi/ncbi-toolkit: Remove dependency on libXp

Remove the dependency on libXp from ncbi-toolkit, since libXp is deprecated
and it isn't needed.
Remove deprecation from ncbi-toolkit.
2017.01.06_3
27 Sep 2019 16:18:59
Revision:513046Original commit files touched by this commit
zeising search for other commits by this committer
Deprecate x11/libXp, it is deprecated upstream

Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt
2017.01.06_3
13 Aug 2019 16:00:39
Revision:508834Original commit files touched by this commit
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories a-c)
2017.01.06_3
09 Jul 2019 17:13:07
Revision:506289Original commit files touched by this commit
sunpoet search for other commits by this committer
Update security/nettle to 3.5.1

- Bump PORTREVISION of dependent ports for shlib change
- Fix build of devel/pijul [1]

Changes:	https://git.lysator.liu.se/nettle/nettle/blob/master/NEWS
PR:		238991
Exp-run by:	antoine
Thanks to:	tobik [1]
2017.01.06_2
09 Feb 2019 23:25:37
Revision:492534Original commit files touched by this commit
sunpoet search for other commits by this committer
Update dns/libidn2 to 2.1.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://gitlab.com/libidn/libidn2/blob/master/NEWS
2017.01.06_1
06 Jan 2019 20:39:43
Revision:489529Original commit files touched by this commit
sunpoet search for other commits by this committer
Update dns/libidn2 to 2.1.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://gitlab.com/libidn/libidn2/blob/master/NEWS
2017.01.06
05 Nov 2018 19:47:43
Revision:484211Original commit files touched by this commit
linimon search for other commits by this committer
Fix build failure with base GCC because of double typedefs.

PR:		232457
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)
2017.01.06
07 Oct 2018 18:29:17
Revision:481472Original commit files touched by this commit
yuri search for other commits by this committer
biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06

Port changes:
* Take maintainership
* Add to LIB_DEPENDS and USExx
* Remove lists of executables and manpages, use file listing instead (*)
* Update WWW
2012.06.20_1
08 Dec 2016 16:39:11
Revision:428135Original commit files touched by this commit
tijl search for other commits by this committer
Remove libjpeg.so.11 compatibility link that was added in r374303 to
prevent massive PORTREVISION bumps.  Bump dependent ports that have not
been bumped since.
2012.06.20
02 Nov 2016 22:45:14
Revision:425174Original commit files touched by this commit
mat search for other commits by this committer
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
2012.06.20
24 Jun 2016 09:04:45
Revision:417414Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add missing dependency, fixing build
- Switch to options helpers
2012.06.20
20 Oct 2014 07:10:48
Revision:371237Original commit files touched by this commit
bapt search for other commits by this committer
Cleanup plist
2012.06.20
23 Mar 2014 20:50:54
Revision:348888Original commit files touched by this commit
pawel search for other commits by this committer
Add staging support
2012.06.20
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
2012.06.20
04 Sep 2013 18:06:08
Revision:326307Original commit files touched by this commit
madpilot search for other commits by this committer
- Make ports use the libc provided iconv implementation on 10-CURRENT
  after r254273
- Fix a bunch of ports to properly work after this
- Mark converters/libiconv as IGNORE for systems with iconv in libc

Reviewed by:	bapt
Approved by:	portmgr (bapt)
Discussed with:	bapt, bsam (who both contributed ideas and code)
2012.06.20
09 Jul 2013 21:49:36
Revision:322587Original commit files touched by this commit
bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
2012.06.20
14 Mar 2013 05:27:58
Revision:314129Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2012.06.20

PR:		176544
Submitted by:	Ports Fury
2009.03.01_1
01 Oct 2012 14:45:17
Revision:305130Original commit files touched by this commit
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
2009.03.01_1
22 Oct 2011 23:50:23
Original commit files touched by this commit
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
2009.03.01_1
02 May 2011 12:41:44
Original commit files touched by this commit
makc search for other commits by this committer
Fix build with open-motif-2.3.3

PR:             ports/154044
Submitted by:   Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:    pav
2009.03.01
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
2009.03.01
31 Jan 2010 03:42:20
Original commit files touched by this commit
pgollucci search for other commits by this committer
- use $SUB_FILES to dynamically adjust pkg-message

PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    fernan@iib.unsam.edu.ar (maintainer)
2009.03.01
28 Mar 2009 16:59:39
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2009.03.01

PR:             133099
Submitted by:   Fernan Aguero <fernan.aguero@gmail.com>
Approved by:    maintainer
2006.05.07_1
19 Apr 2008 17:56:05
Original commit files touched by this commit Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
2006.05.07_1
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
2006.05.07
09 Dec 2006 07:48:18
Original commit files touched by this commit
rafan search for other commits by this committer
- Respect X11BASE

Approved by:    portmgr (linimon)
2006.05.07
06 Jun 2006 12:05:19
Original commit files touched by this commit
itetcu search for other commits by this committer
Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
 blastall now uses the new engine by default, resulting
 in significant performance improvements and enabling
 query concatenation for all program types.

PR:             ports/98570
Submitted by:   maintainer
Approved by:    lawrance (mentor, implict)
2005.12.06
22 Jan 2006 01:25:24
Original commit files touched by this commit
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
2005.12.06
14 Jan 2006 19:34:43
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 2005.12.06

PR:             ports/91714
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2005.06.05
11 Oct 2005 22:33:35
Original commit files touched by this commit
sem search for other commits by this committer
- Update to 20050605

PR:             ports/87266
Submitted by:   maintainer
2004.10.20_1
14 Sep 2005 09:24:04
Original commit files touched by this commit
vs search for other commits by this committer
Don't strip static libraries on installation ;)
(Unbreaks e.g. biology/nclever)
2004.10.20
20 Mar 2005 11:47:59
Original commit files touched by this commit
pav search for other commits by this committer
- Fix man page damage I did last night

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2004.10.20
19 Mar 2005 21:32:13
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 2.2.10 from 20041020
- Transfer maintainership

PR:             ports/67735
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
2004.06.16
01 Nov 2004 22:21:02
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 2004.06.16

Inspired by:    ports/72726
Approved by:    maintainer timeout (2 weeks)
2003.04.21
13 Nov 2003 14:45:08
Original commit files touched by this commit
trevor search for other commits by this committer
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
2003.04.21
22 Oct 2003 09:29:55
Original commit files touched by this commit
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
2003.04.21
05 May 2003 12:24:08
Original commit files touched by this commit
arved search for other commits by this committer
Update to 2003.04.21

PR:             51709
Submitted by:   Tony Maher <tonymaher@optushome.com.au>
2002.04.26
21 Feb 2003 11:01:38
Original commit files touched by this commit
knu search for other commits by this committer
De-pkg-comment.
2002.04.26
21 Sep 2002 14:56:18
Original commit files touched by this commit
ijliao search for other commits by this committer
add forgotten "USE_REINPLACE=yes"

Submitted by:   maintainer
2002.04.26
21 Sep 2002 06:59:28
Original commit files touched by this commit
ijliao search for other commits by this committer
upgrade to 20020426

PR:             39357
Submitted by:   maintainer
2001.12.20
08 Jun 2002 00:40:10
Original commit files touched by this commit
petef search for other commits by this committer
Correct MASTER_SITES.

PR:             39016
Submitted by:   maintainer
22 Feb 2002 07:57:07
commit hash: fp1.25068@dev.null.freshports.orgcommit hash: fp1.25068@dev.null.freshports.orgcommit hash: fp1.25068@dev.null.freshports.orgcommit hash: fp1.25068@dev.null.freshports.org files touched by this commit
pat search for other commits by this committer
Update to 2001.12.20    
19 Sep 2001 14:03:18
commit hash: fp1.18942@dev.null.freshports.orgcommit hash: fp1.18942@dev.null.freshports.orgcommit hash: fp1.18942@dev.null.freshports.orgcommit hash: fp1.18942@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
- Add installation of include files   - Bump PORTREVISION    
06 Aug 2001 11:50:02
commit hash: fp1.16875@dev.null.freshports.orgcommit hash: fp1.16875@dev.null.freshports.orgcommit hash: fp1.16875@dev.null.freshports.orgcommit hash: fp1.16875@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Update maintainer's email address.    
10 Jul 2001 17:35:08
commit hash: fp1.16062@dev.null.freshports.orgcommit hash: fp1.16062@dev.null.freshports.orgcommit hash: fp1.16062@dev.null.freshports.orgcommit hash: fp1.16062@dev.null.freshports.org files touched by this commit
fenner search for other commits by this committer
Update Tony Maher's email address.    
20 Jun 2001 15:25:55
commit hash: fp1.15320@dev.null.freshports.orgcommit hash: fp1.15320@dev.null.freshports.orgcommit hash: fp1.15320@dev.null.freshports.orgcommit hash: fp1.15320@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Update to version 2001.04.03; add installation of some documentation.    
18 Dec 2000 20:32:56
commit hash: fp1.7355@dev.null.freshports.orgcommit hash: fp1.7355@dev.null.freshports.orgcommit hash: fp1.7355@dev.null.freshports.orgcommit hash: fp1.7355@dev.null.freshports.org files touched by this commit
demon search for other commits by this committer
Remove trailing period and package name from the pkg-comment.    
15 Nov 2000 00:54:09
commit hash: fp1.6442@dev.null.freshports.orgcommit hash: fp1.6442@dev.null.freshports.orgcommit hash: fp1.6442@dev.null.freshports.orgcommit hash: fp1.6442@dev.null.freshports.org files touched by this commit
jeh search for other commits by this committer
They made changes to the "blast" program.    
07 Nov 2000 23:28:20
commit hash: fp1.6137@dev.null.freshports.orgcommit hash: fp1.6137@dev.null.freshports.orgcommit hash: fp1.6137@dev.null.freshports.orgcommit hash: fp1.6137@dev.null.freshports.org files touched by this commit
asami search for other commits by this committer
Change motif to a normal dependency.  REQUIRES_MOTIF is now called   USE_MOTIF
and generates a LIB_DEPENDS to x11-toolkits/open-motif.  As   before, it implies
USE_XPM (and therefore USE_XLIB).  Motif-dummy is   removed from
PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3.    
03 Nov 2000 13:23:15
commit hash: fp1.5991@dev.null.freshports.orgcommit hash: fp1.5991@dev.null.freshports.orgcommit hash: fp1.5991@dev.null.freshports.orgcommit hash: fp1.5991@dev.null.freshports.org files touched by this commit
jeh search for other commits by this committer
Yes.  They did re-roll this version, it is legit.   They donot version the dist,
but store them in versioned dir.  Update    Makefile to handle that.   Update
CHECKSUM    
02 Nov 2000 11:25:50
commit hash: fp1.5882@dev.null.freshports.orgcommit hash: fp1.5882@dev.null.freshports.orgcommit hash: fp1.5882@dev.null.freshports.orgcommit hash: fp1.5882@dev.null.freshports.org files touched by this commit
jeh search for other commits by this committer
Updated to new version.  That is the pits, the day after it becomes   a port
they release a new version.  This is a new version, w/o a number.    
29 Oct 2000 13:56:24
commit hash: fp1.5657@dev.null.freshports.orgcommit hash: fp1.5657@dev.null.freshports.orgcommit hash: fp1.5657@dev.null.freshports.orgcommit hash: fp1.5657@dev.null.freshports.org files touched by this commit
jeh search for other commits by this committer
New Port: biology/ncbi-toolkit   National Center for Biotechnology Information
(NCBI) Development Toolkit.    

Number of commits found: 66