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Port details
ngs-sdk Tools and libraries for using data in the INSDC Sequence Read Archives
2.10.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.9.6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-10 23:58:19
Last Update: 2019-08-31 16:09:47
SVN Revision: 510395
License: PD
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (99 items)
  1. @ldconfig
  2. /usr/local/share/licenses/ngs-sdk-2.10.0/catalog.mk
  3. /usr/local/share/licenses/ngs-sdk-2.10.0/LICENSE
  4. /usr/local/share/licenses/ngs-sdk-2.10.0/PD
  5. include/ngs/Alignment.hpp
  6. include/ngs/AlignmentIterator.hpp
  7. include/ngs/ErrorMsg.hpp
  8. include/ngs/Fragment.hpp
  9. include/ngs/FragmentIterator.hpp
  10. include/ngs/Package.hpp
  11. include/ngs/Pileup.hpp
  12. include/ngs/PileupEvent.hpp
  13. include/ngs/PileupEventIterator.hpp
  14. include/ngs/PileupIterator.hpp
  15. include/ngs/Read.hpp
  16. include/ngs/ReadCollection.hpp
  17. include/ngs/ReadGroup.hpp
  18. include/ngs/ReadGroupIterator.hpp
  19. include/ngs/ReadIterator.hpp
  20. include/ngs/Reference.hpp
  21. include/ngs/ReferenceIterator.hpp
  22. include/ngs/ReferenceSequence.hpp
  23. include/ngs/Statistics.hpp
  24. include/ngs/StringRef.hpp
  25. include/ngs/adapter/AlignmentItf.hpp
  26. include/ngs/adapter/ErrorMsg.hpp
  27. include/ngs/adapter/FragmentItf.hpp
  28. include/ngs/adapter/PileupEventItf.hpp
  29. include/ngs/adapter/PileupItf.hpp
  30. include/ngs/adapter/ReadCollectionItf.hpp
  31. include/ngs/adapter/ReadGroupItf.hpp
  32. include/ngs/adapter/ReadItf.hpp
  33. include/ngs/adapter/Refcount.hpp
  34. include/ngs/adapter/ReferenceItf.hpp
  35. include/ngs/adapter/ReferenceSequenceItf.hpp
  36. include/ngs/adapter/StatisticsItf.hpp
  37. include/ngs/adapter/StringItf.hpp
  38. include/ngs/adapter/defs.h
  39. include/ngs/inl/Alignment.hpp
  40. include/ngs/inl/AlignmentIterator.hpp
  41. include/ngs/inl/Fragment.hpp
  42. include/ngs/inl/FragmentIterator.hpp
  43. include/ngs/inl/Package.hpp
  44. include/ngs/inl/Pileup.hpp
  45. include/ngs/inl/PileupEvent.hpp
  46. include/ngs/inl/PileupEventIterator.hpp
  47. include/ngs/inl/PileupIterator.hpp
  48. include/ngs/inl/Read.hpp
  49. include/ngs/inl/ReadCollection.hpp
  50. include/ngs/inl/ReadGroup.hpp
  51. include/ngs/inl/ReadGroupIterator.hpp
  52. include/ngs/inl/ReadIterator.hpp
  53. include/ngs/inl/Reference.hpp
  54. include/ngs/inl/ReferenceIterator.hpp
  55. include/ngs/inl/ReferenceSequence.hpp
  56. include/ngs/inl/Statistics.hpp
  57. include/ngs/inl/StringRef.hpp
  58. include/ngs/itf/AlignmentItf.h
  59. include/ngs/itf/AlignmentItf.hpp
  60. include/ngs/itf/ErrBlock.h
  61. include/ngs/itf/ErrBlock.hpp
  62. include/ngs/itf/ErrorMsg.hpp
  63. include/ngs/itf/FragmentItf.h
  64. include/ngs/itf/FragmentItf.hpp
  65. include/ngs/itf/PackageItf.hpp
  66. include/ngs/itf/PileupEventItf.h
  67. include/ngs/itf/PileupEventItf.hpp
  68. include/ngs/itf/PileupItf.h
  69. include/ngs/itf/PileupItf.hpp
  70. include/ngs/itf/ReadCollectionItf.h
  71. include/ngs/itf/ReadCollectionItf.hpp
  72. include/ngs/itf/ReadGroupItf.h
  73. include/ngs/itf/ReadGroupItf.hpp
  74. include/ngs/itf/ReadItf.h
  75. include/ngs/itf/ReadItf.hpp
  76. include/ngs/itf/Refcount.h
  77. include/ngs/itf/Refcount.hpp
  78. include/ngs/itf/ReferenceItf.h
  79. include/ngs/itf/ReferenceItf.hpp
  80. include/ngs/itf/ReferenceSequenceItf.h
  81. include/ngs/itf/ReferenceSequenceItf.hpp
  82. include/ngs/itf/StatisticsItf.h
  83. include/ngs/itf/StatisticsItf.hpp
  84. include/ngs/itf/StringItf.h
  85. include/ngs/itf/StringItf.hpp
  86. include/ngs/itf/VTable.h
  87. include/ngs/itf/VTable.hpp
  88. include/ngs/itf/defs.h
  89. include/ngs/unix/amd64
  90. include/ngs/unix/fat86/atomic32.h
  91. include/ngs/unix/i386/atomic32.h
  92. include/ngs/unix/x86_64/atomic32.h
  93. include/ngs/win/atomic32.h
  94. include/ngs/win/stdbool.h
  95. lib/libngs-adapt-c++.a
  96. lib/libngs-c++.a
  97. lib/libngs-sdk.so
  98. lib/libngs-sdk.so.2
  99. lib/libngs-sdk.so.2.10.0
Collapse this list.
Dependency lines:
  • ngs-sdk>0:biology/ngs-sdk
To install the port: cd /usr/ports/biology/ngs-sdk/ && make install clean
To add the package: pkg install ngs-sdk
PKGNAME: ngs-sdk
Flavors: there is no flavor information for this port.
NOT_FOR_ARCHS: powerpc64
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
  2. perl5>=5.30.r1<5.31 : lang/perl5.30
Runtime dependencies:
  1. perl5>=5.30.r1<5.31 : lang/perl5.30
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/ncbi/ngs/tar.gz/2.10.0?dummy=/

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
31 Aug 2019 15:09:47
Original commit files touched by this commit  2.10.0
Revision:510395
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.6 -> 2.10.0

Reported by:	portscout
25 Jun 2019 12:17:05
Original commit files touched by this commit  2.9.6
Revision:505081
linimon search for other commits by this committer
Mark this port as not buildable on powerpc64:

  *** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure

The configuration script may have other problems as well.  This needs
to be addressed by upstream (if there is interest).

Approved by:	portmgr (tier-2 blanket)
31 Mar 2019 03:31:59
Original commit files touched by this commit  2.9.6
Revision:497382
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.4 -> 2.9.6

Reported by:	portscout
23 Feb 2019 21:55:55
Original commit files touched by this commit  2.9.4
Revision:493731
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.3 -> 2.9.4

Reported by:	portscout
18 Oct 2018 21:38:22
Original commit files touched by this commit  2.9.3
Revision:482381
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.2 -> 2.9.3
19 Sep 2018 18:09:37
Original commit files touched by this commit  2.9.2
Revision:480103
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.1 -> 2.9.2

Reported by:	portscout
25 Jun 2018 05:04:46
Original commit files touched by this commit  2.9.1
Revision:473291
linimon search for other commits by this committer
Mark as broken on aarch64.

Approved by:	portmgr (tier-2 blanket)
22 Jun 2018 09:33:47
Original commit files touched by this commit  2.9.1
Revision:473028
yuri search for other commits by this committer
biology/ngs-sdk: Update 2.9.0 -> 2.9.1

Reported by:	portscout
10 Jun 2018 23:58:07
Original commit files touched by this commit  2.9.0
Revision:472158
yuri search for other commits by this committer
New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC
Sequence Read Archives

Number of commits found: 9

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