| Port details on branch 2022Q2 |
- ngs-sdk Tools and libraries for using data in the INSDC Sequence Read Archives
- 3.0.1 biology
 =2      3.0.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2018-06-10 23:58:19
- Last Update: 2024-04-28 07:10:02
- Commit Hash: 67dfb32
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: PD
- WWW:
- https://github.com/ncbi/ngs
- Description:
- NGS is a new, domain-specific API for accessing reads, alignments and pileups
produced from Next Generation Sequencing. The API itself is independent from any
particular back-end implementation, and supports use of multiple back-ends
simultaneously. It also provides a library for building new back-end "engines".
The engine for accessing SRA data is contained within the sister repository
ncbi-vdb.
The API is currently expressed in C++, Java and Python languages. The design
makes it possible to maintain a high degree of similarity between the code in
one language and code in another - especially between C++ and Java.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- ngs-sdk>0:biology/ngs-sdk
- To install the port:
- cd /usr/ports/biology/ngs-sdk/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/ngs-sdk
- pkg install ngs-sdk
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: ngs-sdk
- Flavors: there is no flavor information for this port.
- NOT_FOR_ARCHS: powerpc powerpc64 powerpc64le
- distinfo:
- TIMESTAMP = 1687816957
SHA256 (ncbi-ngs-3.0.1_GH0.tar.gz) = 0c326aa1744a689c67d2ee7ef8097ec962fdc1529ddbfd63eb0987a23e76d48e
SIZE (ncbi-ngs-3.0.1_GH0.tar.gz) = 1101663
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.4.1 : devel/gmake
- perl5>=5.36<5.37 : lang/perl5.36
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_ngs-sdk
- USES:
- compiler:c++11-lang gmake perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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