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non port: biology/phd2fasta/Makefile
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Number of commits found: 8

Wed, 23 Jul 2014
[ 16:44 bapt ] Original commit   Revision:362705
362705 benchmarks/himenobench/Makefile
362705 benchmarks/spec-sfs/Makefile
362705 biology/crux/Makefile
362705 biology/embassy/Makefile
362705 biology/p5-bioperl-run/Makefile
362705 biology/phd2fasta/Makefile
362705 biology/protomol/Makefile
362705 biology/pymol/Makefile
362705 cad/alliance/Makefile
362705 cad/cider/Makefile

(Only the first 10 of 55 ports in this commit are shown above. View all ports for this commit)
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
Mon, 9 Jun 2014
[ 11:21 olgeni ] Original commit   Revision:357139
357139 archivers/file-roller/Makefile
357139 astro/ephem/Makefile
357139 astro/gpsman/Makefile
357139 astro/josm/Makefile
357139 astro/p5-ZConf-Weather/Makefile
357139 astro/wmspaceweather/Makefile
357139 astro/xephem/Makefile
357139 audio/ampache/Makefile
357139 audio/beets/Makefile
357139 audio/cdparanoia/Makefile

(Only the first 10 of 120 ports in this commit are shown above. View all ports for this commit)
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
Sat, 10 May 2014
[ 18:07 antoine ] Original commit   Revision:353593
353593 biology/consed/Makefile
353593 biology/phd2fasta/Makefile
353593 biology/phrap/Makefile
353593 biology/phred/Makefile
Replace maintainer's email address with one that seems to work

With hat:	portmgr
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit   Revision:338550
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Fri, 26 Apr 2013
[ 16:23 bdrewery ] Original commit   Revision:316622
316622 biology/phd2fasta/Makefile
Remove unneeded escaping
Sun, 25 May 2008
[ 23:05 edwin ] Original commit 
1.2 biology/consed/Makefile
1.2 biology/phd2fasta/Makefile
1.2 biology/phrap/Makefile
1.2 biology/phred/Makefile
Teach the building cluster that these ports are not to be build
Sat, 24 May 2008
[ 07:01 edwin ] Original commit 
1.99 biology/Makefile
1.1 biology/phd2fasta/Makefile
1.1 biology/phd2fasta/distinfo
1.1 biology/phd2fasta/files/patch-Makefile
1.1 biology/phd2fasta/pkg-descr
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 8

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