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Port details
phylip Phylogeny Inference Package
3.697,1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
3.697Version of this port present on the latest quarterly branch.

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-10 00:25:48
Last Update: 2018-01-01 08:40:23
SVN Revision: 457755
License: BSD2CLAUSE
PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees). Methods that are available
in the package include parsimony, distance matrix, and likelihood
methods, including bootstrapping and consensus trees. Data types that
can be handled include molecular sequences, gene frequencies,
restriction sites, distance matrices, and 0/1 discrete characters.

WWW: http://evolution.genetics.washington.edu/phylip.html
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (48 items)
  1. /usr/local/share/licenses/phylip-3.697,1/catalog.mk
  2. /usr/local/share/licenses/phylip-3.697,1/LICENSE
  3. /usr/local/share/licenses/phylip-3.697,1/BSD2CLAUSE
  4. bin/clique
  5. bin/consense
  6. bin/contml
  7. bin/contrast
  8. bin/dnacomp
  9. bin/dnadist
  10. bin/dnainvar
  11. bin/dnaml
  12. bin/dnamlk
  13. bin/dnamove
  14. bin/dnapars
  15. bin/dnapenny
  16. bin/dollop
  17. bin/dolmove
  18. bin/dolpenny
  19. bin/drawgram
  20. bin/drawtree
  21. bin/factor
  22. bin/fitch
  23. bin/gendist
  24. bin/kitsch
  25. bin/mix
  26. bin/move
  27. bin/neighbor
  28. bin/pars
  29. bin/penny
  30. bin/proml
  31. bin/promlk
  32. bin/protdist
  33. bin/protpars
  34. bin/restdist
  35. bin/restml
  36. bin/retree
  37. bin/seqboot
  38. bin/treedist
  39. lib/libdrawgram.so
  40. lib/libdrawtree.so
  41. share/phylip/font1
  42. share/phylip/font2
  43. share/phylip/font3
  44. share/phylip/font4
  45. share/phylip/font5
  46. share/phylip/font6
  47. @postexec /sbin/ldconfig -m /usr/local/lib
  48. @postunexec /sbin/ldconfig -R
  49. Collapse this list.
Dependency lines:
  • phylip>0:biology/phylip
  • libdrawgram.so:biology/phylip

To install the port: cd /usr/ports/biology/phylip/ && make install clean
To add the package: pkg install phylip

PKGNAME: phylip

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1514795118
SHA256 (phylip-3.697.tar.gz) = 9a26d8b08b8afea7f708509ef41df484003101eaf4beceb5cf7851eb940510c1
SIZE (phylip-3.697.tar.gz) = 3958696


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. bash : shells/bash
  2. gmake : devel/gmake
  3. x11.pc : x11/libX11
  4. xaw7.pc : x11-toolkits/libXaw
  5. xt.pc : x11-toolkits/libXt
Runtime dependencies:
  1. x11.pc : x11/libX11
  2. xaw7.pc : x11-toolkits/libXaw
  3. xt.pc : x11-toolkits/libXt
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for phylip-3.697,1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
gmake

Master Sites:
  1. http://evolution.gs.washington.edu/phylip/download/

Number of commits found: 45

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Jan 2018 08:40:23
Original commit files touched by this commit  3.697,1
Revision:457755
wen search for other commits by this committer
- Update to 3.697
01 Apr 2016 13:29:17
Original commit files touched by this commit  3.696,1
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
28 Jul 2015 17:52:12
Original commit files touched by this commit  3.696,1
Revision:393084
antoine search for other commits by this committer
Unbreak

Reported by:	pkg-fallout
25 Jul 2015 15:06:49
Original commit files touched by this commit  3.696,1
Revision:392887
danfe search for other commits by this committer
- Fix four cases of an obvious typo: LICENSE_FILES -> LICENSE_FILE
- While here: move knobs to their expected location, remove useless check
  for ${PORT_OPTIONS:MDOCS} when installing documentation, standardize
  Makefile headers
02 Nov 2014 14:14:00
Original commit files touched by this commit  3.696,1
Revision:372070
pawel search for other commits by this committer
- Update to version 3.696
- Add LICENSE, no EXAMPLES included in distfile now
- Rework pkg-descr, remove author info - it's available on homepage

PR:		194163
Submitted by:	tkato432@yahoo.com
20 Oct 2014 07:10:48
Original commit files touched by this commit  3.695_3,1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
16 Apr 2014 18:28:50
Original commit files touched by this commit  3.695_3,1
Revision:351411
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
23 Mar 2014 21:52:54
Original commit files touched by this commit  3.695_2,1
Revision:348893
pawel search for other commits by this committer
- Add staging support
- Strip libraries
13 Mar 2014 07:41:34
Original commit files touched by this commit  3.695_1,1
Revision:348042
miwi search for other commits by this committer
- Convert USE_GMAKE to USES
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.695_1,1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
14 Aug 2013 22:35:54
Original commit files touched by this commit  3.695_1
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
24 Jun 2013 18:09:53
Original commit files touched by this commit  3.695_1,1
Revision:321697
rakuco search for other commits by this committer
Fix some screw ups introduced in r319847.

I'm not sure if the submitter of ports/179224 didn't even test his patch or
if the distfile was re-rolled in a bizarre way.

Anyway, fix distfile and also cd into the correct directories to actually
build the port.

PR:		ports/179790
19 Jun 2013 15:43:56
Original commit files touched by this commit  3.695_1,1
Revision:321283
bsam search for other commits by this committer
. pet portlint: add USE_LDCONFIG;
. bump PORTREVISION.
04 Jun 2013 10:02:30
Original commit files touched by this commit  3.695,1
Revision:319847
miwi search for other commits by this committer
- Update to 3.6.9.5

PR:		179224
Submitted by:	Ports Fury
19 Mar 2011 12:38:54
Original commit files touched by this commit  3.69,1

miwi search for other commits by this committer
- Get Rid MD5 support
21 Dec 2009 02:19:12
Original commit files touched by this commit  3.69,1

dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
16 Sep 2009 14:27:00
Original commit files touched by this commit  3.69,1

miwi search for other commits by this committer
-Update to 3.69

PR:             138813
Submitted by:   Ports Fury
Feature safe:   yes
23 Jan 2009 16:28:36
Original commit files touched by this commit  3.68_1,1

flz search for other commits by this committer
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
27 Aug 2008 16:21:06
Original commit files touched by this commit  3.68,1

gahr search for other commits by this committer
- Fix build

Reported by:    QA Tindie
27 Aug 2008 15:19:32
Original commit files touched by this commit  3.68,1

gahr search for other commits by this committer
- Update to 3.68
09 Jun 2008 13:01:30
Original commit files touched by this commit  3.67_1,1

gahr search for other commits by this committer
- Fix build depends
- Bump port revision

Reported by:    pointyhat via pav
03 Jun 2008 23:31:14
Original commit files touched by this commit  3.67,1

gahr search for other commits by this committer
- Update to 3.67
- Sanitize Makefile a little bit
19 Apr 2008 17:56:05
Original commit files touched by this commit  3.66_2
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
19 May 2007 20:32:57
Original commit files touched by this commit  3.66_1,1

flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
27 Jan 2007 21:23:52
Original commit files touched by this commit  3.66,1

itetcu search for other commits by this committer
Update to 3.66

PR:             ports/108434
Submitted by:   Marcelo Araujo
13 Dec 2006 13:20:20
Original commit files touched by this commit  3.65,1

linimon search for other commits by this committer
Reset dbader@ece.unm.edu due to timeouts and no response to email.

Hat:            portmgr
02 Dec 2006 20:34:11
Original commit files touched by this commit  3.65,1

rafan search for other commits by this committer
- Respect X11BASE

Approved by:    maintainer (implicit)
09 Feb 2006 01:17:59
Original commit files touched by this commit  3.65,1

lawrance search for other commits by this committer
Put PORTEPOCH back.

Reported by:    chkversion
08 Feb 2006 14:45:45
Original commit files touched by this commit  3.65

lawrance search for other commits by this committer
Update to 3.65.

PR:             ports/92182
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    dbader@ece.unm.edu (maintainer, timeout 14 days)
22 Jan 2006 08:20:34
Original commit files touched by this commit  3.6,1

edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Apr 2005 12:08:12
Original commit files touched by this commit  3.6,1

arved search for other commits by this committer
Bump PORTEPOCH. 3.6 < 3.62

Pointyhat to:   arved
21 Apr 2005 13:45:15
Original commit files touched by this commit  3.6

arved search for other commits by this committer
Upgrade to 3.62

PR:             79234
Submitted by:   David A. Bader <dbader@ece.unm.edu>
09 Dec 2004 13:33:55
Original commit files touched by this commit  3.62

pav search for other commits by this committer
- Add some sites I found with Google, as old master site don't have this
  version anymore

Reported by:    pointyhat via krion
11 Oct 2004 22:26:34
Original commit files touched by this commit  3.62

pav search for other commits by this committer
- Update to 3.62
- Install font files

PR:             ports/72212
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    David A. Bader <dbader@ece.unm.edu> (maintainer)
31 Mar 2004 03:12:58
Original commit files touched by this commit  3.6.b

trevor search for other commits by this committer
SIZEify (maintainer timeout)
31 Jan 2004 16:06:24
Original commit files touched by this commit  3.6.b

pav search for other commits by this committer
- Update to 3.6.b

PR:             ports/62142
Submitted by:   David A. Bader <dbader@ece.unm.edu> (maintainer)
22 Oct 2003 09:29:55
Original commit files touched by this commit  3.6.a3

osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit  3.6.a3

knu search for other commits by this committer
De-pkg-comment.
13 Aug 2002 16:07:45
Original commit files touched by this commit  3.6.a3

naddy search for other commits by this committer
Update to version 3.6.a3.

PR:             41412
Submitted by:   David A. Bader <dbader@eece.unm.edu>

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:    maintainer
22 Aug 2001 11:02:27
Original commit files touched by this commit

wjv search for other commits by this committer
- Update to version 3.6.a2.1 - since the distribution tarball hadn't been    
renamed between versions, this port failed checksum.   - Apply some whitespace
edits and cut pkg-descr down to size to placate     portlint.    
03 Jul 2001 14:15:40
Original commit files touched by this commit

wjv search for other commits by this committer
Add support for %%PORTDOCS%%.    
11 Apr 2001 04:51:35
Original commit files touched by this commit

steve search for other commits by this committer
This port require X libraries to build/run.    
02 Apr 2001 06:10:15
Original commit files touched by this commit

mharo search for other commits by this committer
updated port biology/phylip from vers 3.5 to 3.6    
08 Oct 2000 00:23:30
Original commit files touched by this commit

asami search for other commits by this committer
Convert category biology to new layout.  
10 Jul 2000 04:25:48
Original commit files touched by this commit

steve search for other commits by this committer
Adding phylip version 3.5.    

Number of commits found: 45

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