notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

/commits.php is going away

I'm proposing to take /commits.php away - it mainly duplicates the home page. Details in this GitHub issue.
Port details
phylip Phylogeny Inference Package
3.697_1,1 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.697_1,1Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
Expired This port expired on: 2021-04-01
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-10 00:25:48
Last Update: 2021-04-07 17:54:26
Commit Hash: 5980fd4
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (50 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/phylip-3.697_1,1/catalog.mk
  3. /usr/local/share/licenses/phylip-3.697_1,1/LICENSE
  4. /usr/local/share/licenses/phylip-3.697_1,1/BSD2CLAUSE
  5. bin/clique
  6. bin/consense
  7. bin/contml
  8. bin/contrast
  9. bin/dnacomp
  10. bin/dnadist
  11. bin/dnainvar
  12. bin/dnaml
  13. bin/dnamlk
  14. bin/dnamove
  15. bin/dnapars
  16. bin/dnapenny
  17. bin/dollop
  18. bin/dolmove
  19. bin/dolpenny
  20. bin/drawgram
  21. bin/drawtree
  22. bin/factor
  23. bin/fitch
  24. bin/gendist
  25. bin/kitsch
  26. bin/mix
  27. bin/move
  28. bin/neighbor
  29. bin/pars
  30. bin/penny
  31. bin/proml
  32. bin/promlk
  33. bin/protdist
  34. bin/protpars
  35. bin/restdist
  36. bin/restml
  37. bin/retree
  38. bin/seqboot
  39. bin/treedist
  40. lib/libdrawgram.so
  41. lib/libdrawtree.so
  42. share/phylip/font1
  43. share/phylip/font2
  44. share/phylip/font3
  45. share/phylip/font4
  46. share/phylip/font5
  47. share/phylip/font6
  48. @owner
  49. @group
  50. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • phylip>0:biology/phylip
  • For LIB depends:
    • libdrawgram.so:biology/phylip
    • libdrawtree.so:biology/phylip
No installation instructions: this port has been deleted.
The package name of this deleted port was:
PKGNAME: phylip
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
phylip
ABIlatestquarterly
FreeBSD:11:aarch643.697,13.697,1
FreeBSD:11:amd64--
FreeBSD:11:armv63.696,13.697,1
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips643.696,1-
FreeBSD:12:aarch643.697,1-
FreeBSD:12:amd64--
FreeBSD:12:armv63.697,13.697_1,1
FreeBSD:12:armv73.697,13.697_1,1
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips643.697,1-
FreeBSD:12:powerpc64-3.697_1,1
FreeBSD:13:aarch643.697_1,1-
FreeBSD:13:amd64--
FreeBSD:13:armv63.697_1,13.697_1,1
FreeBSD:13:armv73.697_1,13.697_1,1
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc643.697_1,1-
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. gmake>=4.3 : devel/gmake
  3. x11.pc : x11/libX11
  4. xaw7.pc : x11-toolkits/libXaw
  5. xt.pc : x11-toolkits/libXt
Runtime dependencies:
  1. x11.pc : x11/libX11
  2. xaw7.pc : x11-toolkits/libXaw
  3. xt.pc : x11-toolkits/libXt
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://evolution.gs.washington.edu/phylip/download/
Collapse this list.
Port Moves
  • port deleted on 2021-04-07
    REASON: Has expired: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)

Number of commits found: 50

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 17:54:26
 files touched by this commit commit hash:5980fd40bc59f3f872f57f75b3a31fb986c1b06e  3.697_1,1
rene search for other commits by this committer
Remove expired ports:

2021-04-01 ftp/wzdftpd: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 astro/roadmap: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 games/cosmo: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 games/bomberinstinct: Unmaintained and dead upstream, does not build
with -fno-common (llvm 11)
2021-04-01 games/drm: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 games/bygfoot: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 games/cre: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 irc/hybserv: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 irc/xaric: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 mail/elmo: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 misc/cave: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 security/bugs: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
2021-04-01 security/dmitry: Unmaintained and dead upstream, does not build with
-fno-common (llvm 11)
(Only the first 15 lines of the commit message are shown above View all of this commit message)
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  3.697_1,1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
30 Aug 2020 09:47:50
Original commit files touched by this commit Revision:547044  3.697_1,1
zeising search for other commits by this committer
Extend expiration of ports broken with -fno-common

Extend the expiration of unmaintained leaf ports that are broken with
-fno-common and previously had a short expiration date.  The new date is set
to 2021-04-01, meaning the ports will be in the 2021Q2 branch, giving people
until 2021-06-30 (10 months from now) to fix issues.
Improve the wording of the deprecation message, mentioning both llvm 11 and
-fno-common.
Bump portrevision to force reinstall.  This way the warning message about
deprecation will be displayed to users installing or reinstalling the
software.

MFH:		2020Q3 (maybe)
29 Aug 2020 08:34:52
Original commit files touched by this commit Revision:546885  3.697,1
tcberner search for other commits by this committer
biology/: Fix build with clang11 and deprecate ports@ ports
04 Nov 2019 21:08:20
Original commit files touched by this commit Revision:516742  3.697,1
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories b

Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
01 Jan 2018 08:40:23
Original commit files touched by this commit Revision:457755  3.697,1
wen search for other commits by this committer
- Update to 3.697
01 Apr 2016 13:29:17
Original commit files touched by this commit Revision:412344  3.696,1
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
28 Jul 2015 17:52:12
Original commit files touched by this commit Revision:393084  3.696,1
antoine search for other commits by this committer
Unbreak

Reported by:	pkg-fallout
25 Jul 2015 15:06:49
Original commit files touched by this commit Revision:392887  3.696,1
danfe search for other commits by this committer
- Fix four cases of an obvious typo: LICENSE_FILES -> LICENSE_FILE
- While here: move knobs to their expected location, remove useless check
  for ${PORT_OPTIONS:MDOCS} when installing documentation, standardize
  Makefile headers
02 Nov 2014 14:14:00
Original commit files touched by this commit Revision:372070  3.696,1
pawel search for other commits by this committer
- Update to version 3.696
- Add LICENSE, no EXAMPLES included in distfile now
- Rework pkg-descr, remove author info - it's available on homepage

PR:		194163
Submitted by:	tkato432@yahoo.com
20 Oct 2014 07:10:48
Original commit files touched by this commit Revision:371237  3.695_3,1
bapt search for other commits by this committer
Cleanup plist
16 Apr 2014 18:28:50
Original commit files touched by this commit Revision:351411  3.695_3,1
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
23 Mar 2014 21:52:54
Original commit files touched by this commit Revision:348893  3.695_2,1
pawel search for other commits by this committer
- Add staging support
- Strip libraries
13 Mar 2014 07:41:34
Original commit files touched by this commit Revision:348042  3.695_1,1
miwi search for other commits by this committer
- Convert USE_GMAKE to USES
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  3.695_1,1
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
14 Aug 2013 22:35:54
Original commit files touched by this commit Revision:324744  3.695_1  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
24 Jun 2013 18:09:53
Original commit files touched by this commit Revision:321697  3.695_1,1
rakuco search for other commits by this committer
Fix some screw ups introduced in r319847.

I'm not sure if the submitter of ports/179224 didn't even test his patch or
if the distfile was re-rolled in a bizarre way.

Anyway, fix distfile and also cd into the correct directories to actually
build the port.

PR:		ports/179790
19 Jun 2013 15:43:56
Original commit files touched by this commit Revision:321283  3.695_1,1
bsam search for other commits by this committer
. pet portlint: add USE_LDCONFIG;
. bump PORTREVISION.
04 Jun 2013 10:02:30
Original commit files touched by this commit Revision:319847  3.695,1
miwi search for other commits by this committer
- Update to 3.6.9.5

PR:		179224
Submitted by:	Ports Fury
19 Mar 2011 12:38:54
Original commit files touched by this commit   3.69,1
miwi search for other commits by this committer
- Get Rid MD5 support
21 Dec 2009 02:19:12
Original commit files touched by this commit   3.69,1
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
16 Sep 2009 14:27:00
Original commit files touched by this commit   3.69,1
miwi search for other commits by this committer
-Update to 3.69

PR:             138813
Submitted by:   Ports Fury
Feature safe:   yes
23 Jan 2009 16:28:36
Original commit files touched by this commit   3.68_1,1
flz search for other commits by this committer
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
27 Aug 2008 16:21:06
Original commit files touched by this commit   3.68,1
gahr search for other commits by this committer
- Fix build

Reported by:    QA Tindie
27 Aug 2008 15:19:32
Original commit files touched by this commit   3.68,1
gahr search for other commits by this committer
- Update to 3.68
09 Jun 2008 13:01:30
Original commit files touched by this commit   3.67_1,1
gahr search for other commits by this committer
- Fix build depends
- Bump port revision

Reported by:    pointyhat via pav
03 Jun 2008 23:31:14
Original commit files touched by this commit   3.67,1
gahr search for other commits by this committer
- Update to 3.67
- Sanitize Makefile a little bit
19 Apr 2008 17:56:05
Original commit files touched by this commit   3.66_2  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
19 May 2007 20:32:57
Original commit files touched by this commit   3.66_1,1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
27 Jan 2007 21:23:52
Original commit files touched by this commit   3.66,1
itetcu search for other commits by this committer
Update to 3.66

PR:             ports/108434
Submitted by:   Marcelo Araujo
13 Dec 2006 13:20:20
Original commit files touched by this commit   3.65,1
linimon search for other commits by this committer
Reset dbader@ece.unm.edu due to timeouts and no response to email.

Hat:            portmgr
02 Dec 2006 20:34:11
Original commit files touched by this commit   3.65,1
rafan search for other commits by this committer
- Respect X11BASE

Approved by:    maintainer (implicit)
09 Feb 2006 01:17:59
Original commit files touched by this commit   3.65,1
lawrance search for other commits by this committer
Put PORTEPOCH back.

Reported by:    chkversion
08 Feb 2006 14:45:45
Original commit files touched by this commit   3.65
lawrance search for other commits by this committer
Update to 3.65.

PR:             ports/92182
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    dbader@ece.unm.edu (maintainer, timeout 14 days)
22 Jan 2006 08:20:34
Original commit files touched by this commit   3.6,1
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Apr 2005 12:08:12
Original commit files touched by this commit   3.6,1
arved search for other commits by this committer
Bump PORTEPOCH. 3.6 < 3.62

Pointyhat to:   arved
21 Apr 2005 13:45:15
Original commit files touched by this commit   3.6
arved search for other commits by this committer
Upgrade to 3.62

PR:             79234
Submitted by:   David A. Bader <dbader@ece.unm.edu>
09 Dec 2004 13:33:55
Original commit files touched by this commit   3.62
pav search for other commits by this committer
- Add some sites I found with Google, as old master site don't have this
  version anymore

Reported by:    pointyhat via krion
11 Oct 2004 22:26:34
Original commit files touched by this commit   3.62
pav search for other commits by this committer
- Update to 3.62
- Install font files

PR:             ports/72212
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    David A. Bader <dbader@ece.unm.edu> (maintainer)
31 Mar 2004 03:12:58
Original commit files touched by this commit   3.6.b
trevor search for other commits by this committer
SIZEify (maintainer timeout)
31 Jan 2004 16:06:24
Original commit files touched by this commit   3.6.b
pav search for other commits by this committer
- Update to 3.6.b

PR:             ports/62142
Submitted by:   David A. Bader <dbader@ece.unm.edu> (maintainer)
22 Oct 2003 09:29:55
Original commit files touched by this commit   3.6.a3
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
21 Feb 2003 11:01:38
Original commit files touched by this commit   3.6.a3
knu search for other commits by this committer
De-pkg-comment.
13 Aug 2002 16:07:45
Original commit files touched by this commit   3.6.a3
naddy search for other commits by this committer
Update to version 3.6.a3.

PR:             41412
Submitted by:   David A. Bader <dbader@eece.unm.edu>

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:    maintainer
22 Aug 2001 11:02:27
 files touched by this commit commit hash:fp1.17622@dev.null.freshports.org
wjv search for other commits by this committer
- Update to version 3.6.a2.1 - since the distribution tarball hadn't been    
renamed between versions, this port failed checksum.   - Apply some whitespace
edits and cut pkg-descr down to size to placate     portlint.    
03 Jul 2001 14:15:40
 files touched by this commit commit hash:fp1.15760@dev.null.freshports.org
wjv search for other commits by this committer
Add support for %%PORTDOCS%%.    
11 Apr 2001 04:51:35
 files touched by this commit commit hash:fp1.12443@dev.null.freshports.org
steve search for other commits by this committer
This port require X libraries to build/run.    
02 Apr 2001 06:10:15
 files touched by this commit commit hash:fp1.11912@dev.null.freshports.org
mharo search for other commits by this committer
updated port biology/phylip from vers 3.5 to 3.6    
08 Oct 2000 00:23:30
 files touched by this commit commit hash:fp1.4706@dev.null.freshports.org
asami search for other commits by this committer
Convert category biology to new layout.  
10 Jul 2000 04:25:48
 files touched by this commit commit hash:fp1.1756@dev.null.freshports.org
steve search for other commits by this committer
Adding phylip version 3.5.    

Number of commits found: 50