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non port: biology/phyml/distinfo
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Number of commits found: 9

Mon, 20 May 2019
[ 09:17 wen ] Original commit   Revision:502098
502098 biology/phyml/Makefile
502098 biology/phyml/distinfo
- Update to 3.3.20190321
Sat, 23 Jun 2018
[ 15:53 fernape ] Original commit   Revision:473138
473138 biology/phyml/Makefile
473138 biology/phyml/distinfo
biology/phyml: update to v3.3.20180621

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D15967
Tue, 15 May 2018
[ 03:17 wen ] Original commit   Revision:469992
469992 biology/phyml/Makefile
469992 biology/phyml/distinfo
- Update to 3.3.20180214
Thu, 1 Feb 2018
[ 07:26 wen ] Original commit   Revision:460569
460569 biology/phyml/Makefile
460569 biology/phyml/distinfo
- Update to 3.3.20180129
Mon, 4 Sep 2017
[ 00:01 sunpoet ] Original commit   Revision:449234
449234 biology/phyml/Makefile
449234 biology/phyml/distinfo
Update to 3.3.20170530

Changes:	https://github.com/stephaneguindon/phyml/releases
Fri, 26 Feb 2016
[ 13:03 wen ] Original commit   Revision:409605
409605 biology/phyml/Makefile
409605 biology/phyml/distinfo
409605 biology/phyml/pkg-descr
- Update to 3.2.0
- Update pkg-descr

PR:		205890
Submitted by:	tkato432@yahoo.com
Mon, 4 Feb 2013
[ 10:07 araujo ] Original commit   Revision:311601
311601 biology/phyml/Makefile
311601 biology/phyml/distinfo
311601 biology/phyml/files
- Update to 20121109.

PR:		ports/175014
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Sat, 19 Mar 2011
[ 12:38 miwi ] Original commit 
1.4 astro/accrete/distinfo
1.6 astro/boinc-einsteinathome/distinfo
1.5 astro/boinc-milkyway/distinfo
1.9 astro/celestia/distinfo
1.4 astro/ephem/distinfo
1.2 astro/fowsr/distinfo
1.3 astro/gaia/distinfo
1.4 astro/gkrellmoon/distinfo
1.3 astro/gkrellmoon2/distinfo
1.4 astro/gkrellsun/distinfo

(Only the first 10 of 4601 ports in this commit are shown above. View all ports for this commit)
- Get Rid MD5 support
Tue, 21 Jul 2009
[ 01:10 amdmi3 ] Original commit 
1.111 biology/Makefile
1.1 biology/phyml/Makefile
1.1 biology/phyml/distinfo
1.1 biology/phyml/files/patch-src-configure
1.1 biology/phyml/files/patch-src-configure.ac
1.1 biology/phyml/pkg-descr
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide range of
options that were designed to facilitate standard phylogenetic analyses. The
main strengths of PhyML lies in the large number of substitution models coupled
to various options to search the space of phylogenetic tree topologies, going
from very fast and efficient methods to slower but generally more accurate
approaches. It also implements two methods to evaluate branch supports in a
sound statistical framework (the non-parametric bootstrap and the approximate
likelihood ratio test). PhyML was designed to process moderate to large data
sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long
can analyzed. In practice however, the amount of memory required to process a
data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided that
they are short. Also, PhyML can handle long sequences provided that they are
not numerous. With most standard personal computers, the "comfort zone" for
PhyML generally lies around 3 to 500 sequences less than 2,000 character long.

WWW: http://code.google.com/p/phyml/

PR:             136877
Submitted by:   Ben Allen <ben@sysadminschronicles.com>

Number of commits found: 9

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