|non port: biology/picard-tools/Makefile
Number of commits found: 6
Tue, 4 Apr 2023
4cda17a (Only the first 10 of 57 ports in this commit are shown above. )
*/*: Refactor java/openjdk7 removal
- java/openjdk7* has been removed from the tree since 2022-09-03 however
the relevant codebases in bsd.java.mk has not been removed and the
consumers has also not been updated to use the next jdk version. This
commit updates all relevant consumers to use JAVA_VERSION=8 instead of
- Since the introduction of jdk version 18 it looks like similar with
jdk version 8(java version string 1.8). This is prone to error as it
looks similar and is only seperated by a '.'. Remove using
JAVA_VERSION with dotted fomat of java version string and update all
consumers to utilize version 8 instead of 1.8.
Approved by: portmgr (blanket)
Wed, 7 Sep 2022
b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
Sun, 6 Feb 2022
bdd2d4a (Only the first 10 of 69 ports in this commit are shown above. )
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit)
Wed, 7 Apr 2021
cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
Tue, 6 Apr 2021
305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
Sat, 13 Jun 2020
biology/picard-tools: CLI tools for manipulating sequencing data
Picard is a set of command line tools for manipulating high-throughput
sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file
formats are defined in the Hts-specs repository.
Number of commits found: 6