non port: biology/plink/Makefile |
SVNWeb
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Number of commits found XX: 21 |
Sun, 27 Sep 2020
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[ 07:44 linimon ] 
550249 biology/plink/Makefile
Allow building on powerpc64le.
Approved by: portmgr (tier-2 blanket)
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Wed, 6 May 2020
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[ 16:39 yuri ] 
534190 biology/gemma/Makefile
534190 biology/plink/Makefile
534190 databases/grass7/Makefile
534190 mail/rspamd-devel/Makefile
534190 mail/rspamd/Makefile
534190 math/R/Makefile
534190 math/adept/Makefile
534190 math/casadi/Makefile
534190 math/ceres-solver/Makefile
534190 math/cminpack/Makefile
(Only the first 10 of 37 ports in this commit are shown above. )
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas
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Mon, 4 May 2020
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[ 23:01 jwb ] 
533993 biology/Makefile
533993 biology/plink
533993 biology/plink/Makefile
533993 biology/plink/distinfo
533993 biology/plink/files/patch-Makefile
533993 biology/plink/files/patch-elf.cpp
533993 biology/plink/files/patch-idhelp.cpp
533993 biology/plink/files/patch-plink__common.h
533993 biology/plink/files/patch-sets.cpp
533993 biology/plink/pkg-descr
(Only the first 10 of 11 ports in this commit are shown above. )
biology/plink: Whole genome association analysis toolset
Reversed removal, commit r471892 2018/06/07
Upgraded to 1.90 beta 6.17
PR: ports/243733
Submitted by: mzaki@e-mail.ne.jp
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Sat, 5 May 2018
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[ 10:49 antoine ] 
469100 audio/abcmidi/Makefile
469100 audio/deforaos-mixer/Makefile
469100 audio/gkrellmss2/Makefile
469100 audio/jxm/Makefile
469100 audio/kaudiocreator/Makefile
469100 audio/linux-genpuid/Makefile
469100 audio/ogg2mp3/Makefile
469100 audio/xmmix/Makefile
469100 audio/xmms-timidity/Makefile
469100 benchmarks/netpipe/Makefile
(Only the first 10 of 42 ports in this commit are shown above. )
Deprecate ports broken for more than 6 months
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Sat, 10 Mar 2018
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[ 17:46 gerald ] 
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile
(Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
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Wed, 31 Jan 2018
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[ 01:07 jwb ] 
460452 audio/praat/Makefile
460452 biology/bowtie/Makefile
460452 biology/bwa/Makefile
460452 biology/cd-hit/Makefile
460452 biology/cdbfasta/Makefile
460452 biology/fastool/Makefile
460452 biology/fastx-toolkit/Makefile
460452 biology/gmap/Makefile
460452 biology/jellyfish/Makefile
460452 biology/libgtextutils/Makefile
(Only the first 10 of 56 ports in this commit are shown above. )
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14128
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Fri, 13 Oct 2017
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[ 11:14 bapt ] 
451982 biology/ariadne/Makefile
451982 biology/biococoa/Makefile
451982 biology/crux/Makefile
451982 biology/plink/Makefile
451982 biology/ssaha/Makefile
451982 biology/tRNAscan-SE/Makefile
Mark as broken ports with no public distfiles
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Sun, 10 Sep 2017
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[ 20:55 gerald ] 
449591 accessibility/atkmm/Makefile
449591 archivers/brotli/Makefile
449591 archivers/c-blosc/Makefile
449591 archivers/kf5-karchive/Makefile
449591 archivers/libpar2/Makefile
449591 archivers/paq/Makefile
449591 archivers/pxz/Makefile
449591 archivers/py-brotli/Makefile
449591 archivers/rvm/Makefile
449591 astro/geographiclib/Makefile
(Only the first 10 of 1201 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
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Sat, 1 Apr 2017
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[ 15:23 gerald ] 
437439 archivers/kf5-karchive/Makefile
437439 archivers/paq/Makefile
437439 archivers/pxz/Makefile
437439 archivers/py-brotli/Makefile
437439 archivers/rvm/Makefile
437439 astro/geographiclib/Makefile
437439 astro/gpstk/Makefile
437439 astro/kstars/Makefile
437439 astro/libosmium/Makefile
437439 astro/nightfall/Makefile
(Only the first 10 of 1118 ports in this commit are shown above. )
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
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Wed, 7 Dec 2016
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[ 13:24 gerald ] 
428057 astro/nightfall/Makefile
428057 astro/wcslib/Makefile
428057 benchmarks/himenobench/Makefile
428057 benchmarks/hpl/Makefile
428057 benchmarks/octave-forge-benchmark/Makefile
428057 biology/crux/Makefile
428057 biology/molden/Makefile
428057 biology/mopac/Makefile
428057 biology/plink/Makefile
428057 biology/psi88/Makefile
(Only the first 10 of 227 ports in this commit are shown above. )
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.
The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.
PR: 214965
Reported by: thierry
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Fri, 1 Apr 2016
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[ 13:29 mat ] 
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile
(Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Fri, 11 Dec 2015
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[ 08:48 miwi ] 
403506 audio/praat/Makefile
403506 biology/bwa/Makefile
403506 biology/cd-hit/Makefile
403506 biology/cdbfasta/Makefile
403506 biology/fastool/Makefile
403506 biology/fasttree/Makefile
403506 biology/fastx-toolkit/Makefile
403506 biology/gmap/Makefile
403506 biology/hmmer/Makefile
403506 biology/libgtextutils/Makefile
(Only the first 10 of 54 ports in this commit are shown above. )
- Update maintainer mail address
- Update/Remove MASTER_SITE
PR: 204755
Submitted by: jwbacon@tds.net (maintainer)
Approved by: mat (mentor)
Differential Revision: D4493
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Wed, 10 Sep 2014
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[ 20:50 gerald ] 
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile
(Only the first 10 of 3171 ports in this commit are shown above. )
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
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Mon, 10 Mar 2014
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[ 20:55 gerald ] 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile
(Only the first 10 of 1081 ports in this commit are shown above. )
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs)
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Fri, 7 Mar 2014
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[ 15:52 bapt ] 
347402 benchmarks/netio/Makefile
347402 benchmarks/pybench/Makefile
347402 benchmarks/scimark2/Makefile
347402 benchmarks/scimark2c/Makefile
347402 biology/biojava/Makefile
347402 biology/blat/Makefile
347402 biology/libsbml/Makefile
347402 biology/plink/Makefile
347402 biology/seqan/Makefile
Convert b* to USES=zip
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Sun, 16 Feb 2014
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[ 17:15 tijl ] 
344614 Mk/Uses/cran.mk
344614 Mk/Uses/fortran.mk
344614 Mk/bsd.gcc.mk
344614 Mk/bsd.octave.mk
344614 Mk/bsd.port.mk
344614 benchmarks/himenobench/Makefile
344614 benchmarks/hpl/Makefile
344614 benchmarks/octave-forge-benchmark/Makefile
344614 biology/crux/Makefile
344614 biology/plink/Makefile
(Only the first 10 of 211 ports in this commit are shown above. )
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases
USE_GCC=yes has been omitted though.
Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.
Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...
Exp-run: bdrewery
Approved by: portmgr (bdrewery)
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Fri, 13 Dec 2013
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[ 09:34 gerald ] 
336328 biology/plink/Makefile
336328 biology/plink/files/patch-elf.cpp
336328 biology/plink/files/patch-idhelp.cpp
336328 biology/plink/files/patch-sets.cpp
Fix the build with more standards-compliant compilers such as GCC 4.7. [1]
On the way replace USE_GMAKE by USES=gmake.
PR: 184566 [1], 182136
Submitted by: Christoph Moench-Tegeder <cmt@burggraben.net> [1]
Approved by: maintainer (Jason Bacon <jwbacon@tds.net>) [1]
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Wed, 11 Dec 2013
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[ 14:43 bapt ] 
336171 biology/crux/Makefile
336171 biology/embassy/Makefile
336171 biology/emboss/Makefile
336171 biology/iolib/Makefile
336171 biology/libsbml/Makefile
336171 biology/mopac/Makefile
336171 biology/ortep3/Makefile
336171 biology/plink/Makefile
336171 biology/plinkseq/Makefile
336171 biology/protomol/Makefile
(Only the first 10 of 12 ports in this commit are shown above. )
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
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Sat, 26 Oct 2013
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[ 00:52 gerald ] 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile
(Only the first 10 of 1147 ports in this commit are shown above. )
Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
- #14669: Fixed extraction of CC from gmp.h.
- Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
- Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
- 100% of all lines are covered by tests
- Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui (Only the first 15 lines of the commit message are shown above )
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Fri, 20 Sep 2013
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[ 15:55 bapt ] 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile
(Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Thu, 27 Sep 2012
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[ 09:59 makc ] 
304954 biology/Makefile
304954 biology/plink
304954 biology/plink/Makefile
304954 biology/plink/distinfo
304954 biology/plink/files
304954 biology/plink/files/patch-Makefile
304954 biology/plink/pkg-descr
304954 biology/plinkseq
304954 biology/plinkseq/Makefile
304954 biology/plinkseq/distinfo
(Only the first 10 of 12 ports in this commit are shown above. )
Add new ports biology/plink [1] and biology/plinkseq [2]:
PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.
PR: ports/171918 [1]
PR: ports/171922 [2]
Submitted by: Jason Bacon <jwbacon at tds.net>
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Number of commits found XX: 21 |