biology/primer3: Fix build with llvm16

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>

Remove # $FreeBSD$ from Makefiles.

biology/primer3: Fix build with Clang 6

thal.c:426:13: error: comparison between pointer and integer ('int' and 'const
unsigned char *')
   if ('\0' == oligo_f) {
       ~~~~ ^  ~~~~~~~
thal.c:431:13: error: comparison between pointer and integer ('int' and 'const
unsigned char *')
   if ('\0' == oligo_r) {
       ~~~~ ^  ~~~~~~~

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/primer3-2.3.6.log

Quote ${CC} and similar variables in MAKE_ARGS.

Reported by:	Dominic Fandrey <kamikaze@bsdforen.de>

- Update to 2.3.6
- Reset maintainer to ports@

Support staging

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

Make sure to respect CC and CXX, this fixes the build on head without gcc

- Update to 2.3.5
- Add LICENSE
- Remove pkg-message since license changed upstream
- Do not install test files as example

- Take maintainership

- Reassign to the heap at maintainer's request

- Respect CC

PR:             163172
Submitted by:   Jan Beich <jbeich@tormail.net>
Approved by:    maintainer timeout

- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)

- Get Rid MD5 support

- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)

- Update to 1.1.4

Submitted by:   Wen Heping (myself)
Approved by:    maintainer (via Email)

- Update to 1.1.3

PR:             ports/122374
Submitted by:   Wen heping <wenheping@gmail.com>
Patch revised:  Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)

- Update to 1.0.1
- Update MASTER_SITES
- Pass maintainership to submitter

PR:             ports/107246
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)

Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr

Remove USE_REINPLACE from all categories starting with B

SHA256ify

Approved by:    krion@

Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>

- Update to 1.0.0
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:             ports/82154
Submitted by:   George Hartzell <hartzell@alerce.com>
Approved by:    maintainer

SIZEify (maintainer timeout)

- Fix MASTER_SITES

PR:             ports/63469
Submitted by:   maintainer

- Fix MASTER_SITES

PR:             60417
Submitted by:   maintainer

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

Updated to fix problems as stated in PR ports/42915

PR:             ports/42915
Submitted by:   Tony Maher <tonym@biolateral.com.au>

add primer3 0.9
Primer3 helps to choose primers for PCR reactions

PR:             35298
Submitted by:   Tony Maher <tonym@biolateral.com.au>