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Port details
protomol OO, component based, framework for molecular dynamics (MD) simulations
2.0.3_15 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.3_15Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-05-05 20:12:57
Last Update: 2023-11-01 22:11:47
Commit Hash: 05f0f44
License: GPLv2
WWW:
https://protomol.sourceforge.net/
Description:
ProtoMol is an object-oriented, component based, framework for molecular dynamics (MD) simulations. The framework supports the CHARMM 19 and 28a2 force fields and is able to process PDB, PSF, XYZ and DCD trajectory files. It is designed for high flexibility, easy extendibility and maintenance, and high performance demands, including parallelization. The technique of multiple time-stepping is used to improve long-term efficiency. The use of fast electrostatic force evaluation algorithms like Ewald, particle Mesh Ewald (PME), and Multigrid (MG) summation further enhances performance. Longer time steps are possible using MOLLY, Langevin Molly and Hybrid Monte Carlo, Nose-Hoover, and Langevin integrators. In addition, ProtoMol has been designed to interact with VMD, a visualization engine developed by the University of Illinois that is used for displaying large biomolecular systems in three dimensions. ProtoMol is freely distributed software, and the source code is available.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (120 items)
Collapse this list.
  1. /usr/local/share/licenses/protomol-2.0.3_15/catalog.mk
  2. /usr/local/share/licenses/protomol-2.0.3_15/LICENSE
  3. /usr/local/share/licenses/protomol-2.0.3_15/GPLv2
  4. bin/coords2coords
  5. bin/coulomb
  6. bin/dcd2dcd
  7. bin/iSGProtomol
  8. bin/protomol
  9. bin/xyzviz
  10. share/examples/protomol/coulomb_309/309ca.config
  11. share/examples/protomol/coulomb_309/309ca.par
  12. share/examples/protomol/coulomb_309/309ca.pos.xyz
  13. share/examples/protomol/coulomb_309/309ca.psf
  14. share/examples/protomol/alanine_dipeptide_water_184x/alanine.equil.psf
  15. share/examples/protomol/alanine_dipeptide_water_184x/alanine.7ns.namd
  16. share/examples/protomol/alanine_dipeptide_water_184x/alanine.equil.pdb
  17. share/examples/protomol/alanine_dipeptide_water_184x/ala607.pgn
  18. share/examples/protomol/alanine_dipeptide_water_184x/alanine.namd
  19. share/examples/protomol/alanine_dipeptide_water_184x/alanine.pdb
  20. share/examples/protomol/alanine_dipeptide_water_184x/alanine.psf
  21. share/examples/protomol/argon_400/argon.par
  22. share/examples/protomol/argon_400/argon.lf.conf
  23. share/examples/protomol/argon_400/argon.npt.conf
  24. share/examples/protomol/argon_400/argon.pdb
  25. share/examples/protomol/argon_400/argon.psf
  26. share/examples/protomol/argon_400/argon.vel.pdb
  27. share/examples/protomol/bpti_water_1101/bpti.par
  28. share/examples/protomol/bpti_water_1101/bpti.hmc.conf
  29. share/examples/protomol/bpti_water_1101/bpti.lf.conf
  30. share/examples/protomol/bpti_water_1101/bpti.pdb
  31. share/examples/protomol/bpti_water_1101/bpti.psf
  32. share/examples/protomol/bpti_water_1101/bpti.shmc.conf
  33. share/examples/protomol/bpti_water_14281/bpti.shake.conf
  34. share/examples/protomol/bpti_water_14281/bpti.ewald.conf
  35. share/examples/protomol/bpti_water_14281/bpti.mg.conf
  36. share/examples/protomol/bpti_water_14281/bpti.namd
  37. share/examples/protomol/bpti_water_14281/bpti.par
  38. share/examples/protomol/bpti_water_14281/bpti.pbc.conf
  39. share/examples/protomol/bpti_water_14281/bpti.pdb
  40. share/examples/protomol/bpti_water_14281/bpti.psf
  41. share/examples/protomol/butane_4/runButaneTests.sh
  42. share/examples/protomol/butane_4/README
  43. share/examples/protomol/butane_4/UA_butane.conf
  44. share/examples/protomol/butane_4/UA_butane.dhmc.conf
  45. share/examples/protomol/butane_4/UA_butane.hmc.conf
  46. share/examples/protomol/butane_4/UA_butane.lf.conf
  47. share/examples/protomol/butane_4/UA_butane.par
  48. share/examples/protomol/butane_4/UA_butane.pdb
  49. share/examples/protomol/butane_4/UA_butane.psf
  50. share/examples/protomol/butane_4/angleSetDHMC
  51. share/examples/protomol/butane_4/cleanOutput.bash
  52. share/examples/protomol/butane_4/dihedralSetDHMC
  53. share/examples/protomol/butane_4/procDihedralFile.awk
  54. share/examples/protomol/butane_4/runButaneResults.sh
  55. share/examples/protomol/alanine_dipeptide_23/ala_equil.pdb
  56. share/examples/protomol/alanine_dipeptide_23/ala_equil.psf
  57. share/examples/protomol/alanine_dipeptide_23/ala_equilibrated.pdb
  58. share/examples/protomol/alanine_dipeptide_23/ala_equilibrated.pgn
  59. share/examples/protomol/decalanine_66/dihedralIndexSet
  60. share/examples/protomol/decalanine_66/alanine.BSplineMOLLY.conf
  61. share/examples/protomol/decalanine_66/alanine.Equilibrium.conf
  62. share/examples/protomol/decalanine_66/alanine.LF.conf
  63. share/examples/protomol/decalanine_66/alanine.LFwDihedralOut.conf
  64. share/examples/protomol/decalanine_66/alanine.PLF.conf
  65. share/examples/protomol/decalanine_66/alanine.Shake.conf
  66. share/examples/protomol/decalanine_66/alanine.par
  67. share/examples/protomol/decalanine_66/alanine.pdb
  68. share/examples/protomol/decalanine_66/alanine.psf
  69. share/examples/protomol/decalanine_66/alanine.testSet
  70. share/examples/protomol/decalanine_66/alanine.water.pdb
  71. share/examples/protomol/decalanine_66/alanine.water.psf
  72. share/examples/protomol/electrons_22/22el.conf
  73. share/examples/protomol/electrons_22/22el.pos.xyz
  74. share/examples/protomol/electrons_22/22el.psf
  75. share/examples/protomol/electrons_22/22el.vel.xyz
  76. share/examples/protomol/electrons_22/el.par
  77. share/examples/protomol/methane_ethane_xxx/iSGMD_README
  78. share/examples/protomol/methane_ethane_xxx/ethane_methane.par
  79. share/examples/protomol/methane_ethane_xxx/ethane_methane.trans
  80. share/examples/protomol/methane_ethane_xxx/ethane_methane_100.conf
  81. share/examples/protomol/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.coor.xyz
  82. share/examples/protomol/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.psf
  83. share/examples/protomol/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.vel.xyz
  84. share/examples/protomol/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.xsc
  85. share/examples/protomol/methane_ethane_xxx/ethane_methane_300.conf
  86. share/examples/protomol/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.coor.xyz
  87. share/examples/protomol/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.psf
  88. share/examples/protomol/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.vel.xyz
  89. share/examples/protomol/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.xsc
  90. share/examples/protomol/testset/test.tcsh
  91. share/examples/protomol/testset/README
  92. share/examples/protomol/testset/hmc.Bsp_PME.pb.conf
  93. share/examples/protomol/testset/hmc.std.conf
  94. share/examples/protomol/testset/lf.Ewald.pb.conf
  95. share/examples/protomol/testset/lf.MG.conf
  96. share/examples/protomol/testset/lf.PME.pb.conf
  97. share/examples/protomol/testset/lf.std.conf
  98. share/examples/protomol/testset/lf.std.pb.conf
  99. share/examples/protomol/testset/shmc.Bsp_PME.pb.conf
  100. share/examples/protomol/testset/shmc.std.pb.conf
  101. share/examples/protomol/testset/slf.std.pb.conf
  102. share/examples/protomol/water_216/water216.vel.pdb
  103. share/examples/protomol/water_216/water216.conf
  104. share/examples/protomol/water_216/water216.coor.pdb
  105. share/examples/protomol/water_216/water216.new.pos.pdb
  106. share/examples/protomol/water_216/water216.new.vel.pdb
  107. share/examples/protomol/water_216/water216.par
  108. share/examples/protomol/water_216/water216.psf
  109. share/examples/protomol/water_648/water648.tip3.psf
  110. share/examples/protomol/water_648/water648.fluid.conf
  111. share/examples/protomol/water_648/water648.fluid.pos.xyz
  112. share/examples/protomol/water_648/water648.ice.conf
  113. share/examples/protomol/water_648/water648.ice.nvt.conf
  114. share/examples/protomol/water_648/water648.ice.pos.xyz
  115. share/examples/protomol/water_648/water648.spce.par
  116. share/examples/protomol/water_648/water648.spce.psf
  117. share/examples/protomol/water_648/water648.tip3.par
  118. @owner
  119. @group
  120. @mode
Collapse this list.
Dependency lines:
  • protomol>0:biology/protomol
To install the port:
cd /usr/ports/biology/protomol/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/protomol
  • pkg install protomol
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: protomol
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (protomol-2.0.3-tar.gz) = 52c5faf69c717516a2b071dabbaed089ae7e9944b706e391e74604946a69c183 SIZE (protomol-2.0.3-tar.gz) = 2391568

Packages (timestamps in pop-ups are UTC):
protomol
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.0.3_152.0.3_152.0.3_142.0.3_152.0.3_15-2.0.3_14-
FreeBSD:13:quarterly2.0.3_152.0.3_152.0.3_142.0.3_152.0.3_152.0.3_152.0.3_152.0.3_15
FreeBSD:14:latest2.0.3_152.0.3_152.0.3_142.0.3_152.0.3_152.0.3_14-2.0.3_14
FreeBSD:14:quarterly2.0.3_152.0.3_15-2.0.3_152.0.3_152.0.3_152.0.3_152.0.3_15
FreeBSD:15:latest2.0.3_152.0.3_15n/a2.0.3_15n/a2.0.3_152.0.3_152.0.3_15
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. xmu.pc : x11-toolkits/libXmu
  2. xt.pc : x11-toolkits/libXt
  3. sm.pc : x11/libSM
  4. ice.pc : x11/libICE
  5. xext.pc : x11/libXext
  6. x11.pc : x11/libX11
  7. xi.pc : x11/libXi
Runtime dependencies:
  1. xmu.pc : x11-toolkits/libXmu
  2. xt.pc : x11-toolkits/libXt
  3. sm.pc : x11/libSM
  4. ice.pc : x11/libICE
  5. xext.pc : x11/libXext
  6. x11.pc : x11/libX11
  7. xi.pc : x11/libXi
Library dependencies:
  1. libpng.so : graphics/png
  2. libtiff.so : graphics/tiff
  3. libjpeg.so : graphics/jpeg-turbo
  4. libglut.so : graphics/freeglut
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for protomol-2.0.3_15: EXAMPLES=on: Build and/or install examples GLUT=on: OpenGL Utility Toolkit support ===> Use 'make config' to modify these settings
Options name:
biology_protomol
USES:
jpeg shebangfix xorg gl
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (56 items)
Collapse this list.
  1. http://cfhcable.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  2. http://cytranet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  3. http://deac-ams.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  4. http://deac-fra.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  5. http://deac-riga.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  6. http://downloads.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  7. http://excellmedia.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  8. http://freefr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  9. http://gigenet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  10. http://ixpeering.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  11. http://jaist.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  12. http://jztkft.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  13. http://kumisystems.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  14. http://liquidtelecom.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  15. http://nchc.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  16. http://netactuate.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  17. http://netcologne.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  18. http://netix.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  19. http://onboardcloud.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  20. http://phoenixnap.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  21. http://razaoinfo.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  22. http://sinalbr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  23. http://sitsa.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  24. http://sonik.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  25. http://tenet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  26. http://udomain.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  27. http://ufpr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  28. http://versaweb.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  29. https://cfhcable.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  30. https://cytranet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  31. https://deac-ams.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  32. https://deac-fra.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  33. https://deac-riga.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  34. https://downloads.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  35. https://excellmedia.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  36. https://freefr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  37. https://gigenet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  38. https://ixpeering.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  39. https://jaist.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  40. https://jztkft.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  41. https://kumisystems.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  42. https://liquidtelecom.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  43. https://nchc.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  44. https://netactuate.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  45. https://netcologne.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  46. https://netix.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  47. https://onboardcloud.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  48. https://phoenixnap.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  49. https://razaoinfo.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  50. https://sinalbr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  51. https://sitsa.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  52. https://sonik.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  53. https://tenet.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  54. https://udomain.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  55. https://ufpr.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
  56. https://versaweb.dl.sourceforge.net/project/protomol/ProtoMol/2.0.3/
Collapse this list.

Number of commits found: 44

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.0.3_15
01 Nov 2023 22:11:47
commit hash: 05f0f44a557a53913001d6debf17965dfb799288commit hash: 05f0f44a557a53913001d6debf17965dfb799288commit hash: 05f0f44a557a53913001d6debf17965dfb799288commit hash: 05f0f44a557a53913001d6debf17965dfb799288 files touched by this commit
Rodrigo Osorio (rodrigo) search for other commits by this committer
*/*: Update WWW to use HTTPS for sourceforge.net projects

Homepage link is permanent redirected to its HTTPS counterpart
2.0.3_15
28 Jul 2023 17:13:17
commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f files touched by this commit
Daniel Engberg (diizzy) search for other commits by this committer
*/*: Bump jpeg-turbo users treewide

New major version 3.0.0
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.0.3_14
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.3_14
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.3_14
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.0.3_14
04 Nov 2019 21:08:20
Revision:516742Original commit files touched by this commit
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories b

Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
2.0.3_14
25 Aug 2018 03:47:25
Revision:477997Original commit files touched by this commit
tobik search for other commits by this committer
biology/protomol: Fix doubled USES overwriting the old value

- Make sure shebangfix is actually used
2.0.3_13
25 Aug 2018 03:45:28
Revision:477996Original commit files touched by this commit
tobik search for other commits by this committer
biology/protomol: Fix build with Clang 6

Report.cpp:208:12: error: invalid operands to binary expression ('std::ostream'
(aka 'basic_ostream<char>') and 'const std::__1::ostream' (aka 'const
basic_ostream<char>'))
        *myStream << a;
        ~~~~~~~~~ ^  ~
/usr/include/c++/v1/ostream:218:20: note: candidate function not viable: no
known conversion from 'const std::__1::ostream' (aka 'const
basic_ostream<char>') to 'const void *' for 1st argument; take the address of
the argument with &
    basic_ostream& operator<<(const void* __p);
                   ^
... and so on ...

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/protomol-2.0.3_13.log
2.0.3_13
23 May 2017 05:03:16
Revision:441503Original commit files touched by this commit
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
2.0.3_12
18 Dec 2016 05:34:42
Revision:428835Original commit files touched by this commit
marino search for other commits by this committer
biology/protomol: Support build with C++11 (taken from dports)
2.0.3_12
01 Apr 2016 13:29:17
Revision:412344Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
2.0.3_12
19 Aug 2015 13:30:00
Revision:394778Original commit files touched by this commit Sanity Test Failure
mat search for other commits by this committer
Convert ports to use the options helpers in categories [abc]*, and minor fixes.

Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3412?
2.0.3_12
25 Jun 2015 09:32:19
Revision:390543Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add LICENSE
- Fix shebangs

Approved by:	porgmgr (bapt)
2.0.3_11
23 Jun 2015 06:58:20
Revision:390356Original commit files touched by this commit
bapt search for other commits by this committer
Convert to COPYTREE_SHARE
Use options helpers
2.0.3_11
22 Jun 2015 18:33:22
Revision:390310Original commit files touched by this commit
antoine search for other commits by this committer
Convert to USES=jpeg
2.0.3_11
11 May 2015 18:34:58
Revision:386097Original commit files touched by this commit
mat search for other commits by this committer
Cleanup DIST* variables.

When appropriate:
- Try to use DISTVERSION{SUF,PRE}FIX
- Replace PORTNAME-PORTVERSION by DISTNAME
- Convert MASTER_SITES to use macros
- Other light cleanup

With hat:	portmgr
Sponsored by:	Absolight
2.0.3_11
25 Dec 2014 20:54:43
Revision:375598Original commit files touched by this commit
bapt search for other commits by this committer
Bump portrevision after png update
2.0.3_10
25 Dec 2014 19:04:27
Revision:375594Original commit files touched by this commit
antoine search for other commits by this committer
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade
2.0.3_10
20 Oct 2014 07:10:48
Revision:371237Original commit files touched by this commit
bapt search for other commits by this committer
Cleanup plist
2.0.3_10
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
2.0.3_9
25 Aug 2014 17:19:31
Revision:366104Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Stagify
- Fix build
2.0.3_9
23 Jul 2014 16:44:28
Revision:362705Original commit files touched by this commit
bapt search for other commits by this committer
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
2.0.3_9
16 Apr 2014 18:28:50
Revision:351411Original commit files touched by this commit
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.3_8
15 Jan 2014 22:51:26
Revision:339845Original commit files touched by this commit
bapt search for other commits by this committer
Reduce over inclusion of bsd.port.mk
2.0.3_8
11 Dec 2013 14:43:51
Revision:336171Original commit files touched by this commit
bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
2.0.3_8
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
2.0.3_8
18 Mar 2013 06:54:40
Revision:314531Original commit files touched by this commit
jgh search for other commits by this committer
- adoption of optionsNG
- trim historical header
- fix mixture of DOCS/EXAMPLES -> EXAMPLES
- add shared description for GLUT to bodm

Approved by:	portmgr (miwi)
2.0.3_8
04 Aug 2012 22:52:04
Original commit files touched by this commit
kwm search for other commits by this committer
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
developed in years and has been dropped from the MESA 8.0 distribution.
Freeglut is a rewrite of glut and is actively developed and is used by
many linux distributions instead of libglut.

Bump all ports that directly depend on libglut because of the shlib version
change.

There are some extra items in this patch.

*) Because freeglut doesn't have the same dependancies as libglut, some ports
	need extra dependencies added to USE_XORG to make them build.
*) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped
	with libglut.
*) Remove option for libglut/freeglut selection in games/cake, only freeglut
	remains now.
*) While here fix a png related build issue games/vegastrike.

Thanks to miwi for running the exp-run.

Approved by:	portmgr (miwi)

Collaboration with:	zeising@
Obtained from:	xorg-dev staging area.
2.0.3_7
01 Jun 2012 05:26:28
Original commit files touched by this commit
dinoex search for other commits by this committer
- update png to 1.5.10
2.0.3_6
23 Sep 2011 22:26:39
Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
2.0.3_6
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
2.0.3_6
28 Mar 2010 06:47:48
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
2.0.3_5
05 Feb 2010 11:46:55
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to jpeg-8
2.0.3_4
22 Aug 2009 00:15:15
Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
2.0.3_4
18 Jul 2009 11:11:29
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to jpeg7
Tested by:      pav on pointyhat
2.0.3_3
23 Jan 2009 16:28:36
Original commit files touched by this commit
flz search for other commits by this committer
- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
2.0.3_2
25 Jul 2008 14:34:52
Original commit files touched by this commit
pav search for other commits by this committer
- Remove USE_GCC where it can be satisfied with base compiler on following
  FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
2.0.3_2
19 Apr 2008 17:56:05
Original commit files touched by this commit Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
2.0.3_2
28 Mar 2008 19:01:48
Original commit files touched by this commit
gahr search for other commits by this committer
- Fix build with GCC 4.2

Approved by:    miwi (mentor)
2.0.3_2
25 Mar 2008 22:44:48
Original commit files touched by this commit
miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
2.0.3_1
02 Oct 2007 09:08:37
Original commit files touched by this commit
linimon search for other commits by this committer
Mark as broken with gcc4.2.
2.0.3_1
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
2.0.3
05 May 2006 20:09:55
Original commit files touched by this commit
ehaupt search for other commits by this committer
Add protomol 2.0.3, OO, component based, framework for molecular
dynamics (MD) simulations.

PR:             95123
Submitted by:   Sangwoo Shim <sangwoos@gmail.com>

Number of commits found: 44