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NOTE: the WWW: line in pkg-descr was relocated to a WWW= line in Makefile. Each port in FreshPorts has a homepage link. Look for it right after the Description: on each port's home page.

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Port details
py-dna-features-viewer Python library to visualize DNA features, e.g. GenBank or Gff files
3.1.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-02-03 12:42:05
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: python
License: MIT
Description:
HomepagecgitgithubgitlabSVNWeb
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}dna-features-viewer>0:biology/py-dna-features-viewer@${PY_FLAVOR}
To install the port:
cd /usr/ports/biology/py-dna-features-viewer/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-dna-features-viewer
  • pkg install py39-dna-features-viewer
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-dna-features-viewer listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-dna-features-viewer
Package flavors (<flavor>: <package>)
  • py39: py39-dna-features-viewer
distinfo:

Packages (timestamps in pop-ups are UTC):
py39-dna-features-viewer
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout3.1.1
FreeBSD:12:amd643.1.13.1.1
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i3863.1.13.1.1
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch643.1.13.1.1
FreeBSD:13:amd643.1.13.1.1
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv73.1.13.1.1
FreeBSD:13:i3863.1.13.1.1
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch643.1.1pkg-fallout
FreeBSD:14:amd643.1.1pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv73.1.1pkg-fallout
FreeBSD:14:i3863.1.1pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-matplotlib>=3 : math/py-matplotlib@py39
  2. py39-biopython>0 : biology/py-biopython@py39
  3. py39-bcbio-gff>0 : biology/py-bcbio-gff@py39
  4. py39-packaging>0 : devel/py-packaging@py39
  5. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  6. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/d/dna_features_viewer/
  2. https://pypi.org/packages/source/d/dna_features_viewer/
Collapse this list.

Number of commits found: 6

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.1.1
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.1.1
08 May 2022 12:48:38
commit hash:dda5e525082db9c23d34d316867a906ca4850951commit hash:dda5e525082db9c23d34d316867a906ca4850951commit hash:dda5e525082db9c23d34d316867a906ca4850951 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-dna-features-viewer: Update to 3.1.1

python 3.9 compatibility

Changes: https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/tags

Reported by:    portscout
3.1.0_2
12 Feb 2022 15:12:39
commit hash:72923f58ba52b846c681aa7262eb161b6152b062commit hash:72923f58ba52b846c681aa7262eb161b6152b062commit hash:72923f58ba52b846c681aa7262eb161b6152b062 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-dna-features-viewer: Add missing dependency

py-packaging not mentioned in setup.py, but runtime errors thrown
without it.
3.1.0_1
03 Feb 2022 20:11:38
commit hash:0939abbdf6313af011b2003e8872650e5e5eb1f3commit hash:0939abbdf6313af011b2003e8872650e5e5eb1f3commit hash:0939abbdf6313af011b2003e8872650e5e5eb1f3 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-dna-features-viewer: Add py-bcbio-gff dep

Needed to automatically extract features from GFF files
3.1.0
03 Feb 2022 12:37:38
commit hash:2b1ef5b34e0ee73661c0b9755f4e6806de1095d5commit hash:2b1ef5b34e0ee73661c0b9755f4e6806de1095d5commit hash:2b1ef5b34e0ee73661c0b9755f4e6806de1095d5 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-dna-features-viewer: Python lib to visualize DNA features

DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.

DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.

Number of commits found: 6