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Port details
py-pywgsim Modified wgsim genomic data simulator
0.5.2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-06 12:57:08
Last Update: 2021-09-06 12:55:49
Commit Hash: c085af1
Also Listed In: python
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pywgsim>0:biology/py-pywgsim@${PY_FLAVOR}
To install the port: cd /usr/ports/biology/py-pywgsim/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-pywgsim
  • pkg install py38-pywgsim
NOTE: This is a Python port. Instead of py38-pywgsim listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-pywgsim
Package flavors (<flavor>: <package>)
  • py38: py38-pywgsim
distinfo:
Packages (timestamps in pop-ups are UTC):
py38-pywgsim
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.5.2-
FreeBSD:11:armv6--
FreeBSD:11:i3860.5.2-
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.5.2
FreeBSD:12:amd640.5.20.5.2
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.5.20.5.2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-0.5.2
FreeBSD:13:amd640.5.20.5.2
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.5.20.5.2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch640.5.2-
FreeBSD:14:amd640.5.2-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.5.2-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-plac>=0 : devel/py-plac@py38
  2. py38-setuptools>0 : devel/py-setuptools@py38
  3. python3.8 : lang/python38
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/p/pywgsim/
  2. https://pypi.org/packages/source/p/pywgsim/
Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Sep 2021 12:55:49
 files touched by this commit commit hash:c085af1e81472458f64d957aab5e9a9e0580d8ca  0.5.2
jwb search for other commits by this committer
biology/py-pywgsim: Modified wgsim genomic data simulator

pywgsim is a modified version of the wgsim short read simulator.  The
code for wgsim has been modified to allow visualizing the simulated
mutations as a GFF file.

Number of commits found: 1