FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

We also have a status page: https://freshports.wordpress.com/

Port details
python-nexus Generic nexus file format reader for python
1.53 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 29 Dec 2009 13:39:49
Also Listed In: python
License: BSD3CLAUSE
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
reader for python.

WWW: http://simon.net.nz/articles/python-nexus
SVNWeb : Homepage : PortsMon
There is no configure plist information for this port

To install the port: cd /usr/ports/biology/python-nexus/ && make install clean
To add the package: pkg install py27-python-nexus

PKGNAME: py27-python-nexus

distinfo:

TIMESTAMP = 1500797462
SHA256 (python-nexus-1.53.tar.gz) = 74297ed5142bc2ca15f40c73cdfd8ffcae0030733a07dc1db8014ea0d7864e24
SIZE (python-nexus-1.53.tar.gz) = 21641


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. py27-setuptools>0 : devel/py-setuptools@py27
  2. python2.7 : lang/python27
Runtime dependencies:
  1. py27-setuptools>0 : devel/py-setuptools@py27
  2. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python

Master Sites:
  1. https://files.pythonhosted.org/packages/source/p/python-nexus/
  2. https://pypi.python.org/packages/source/p/python-nexus/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 15

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Nov 2017 15:50:34
Original commit files touched by this commit  1.53
Revision:455210  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
23 Jul 2017 08:15:08
Original commit files touched by this commit  1.53
Revision:446458
wen search for other commits by this committer
- Update to 1.53
01 Mar 2017 07:00:37
Original commit files touched by this commit  1.42
Revision:435123
wen search for other commits by this committer
- Update to 1.42
08 Jun 2016 07:39:05
Original commit files touched by this commit  1.35
Revision:416534
wen search for other commits by this committer
- Update to 1.35
19 May 2016 10:21:25
Original commit files touched by this commit  1.34
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
12 Feb 2016 13:18:37
Original commit files touched by this commit  1.34
Revision:408731
wen search for other commits by this committer
- Update to 1.34
11 Dec 2015 00:59:40
Original commit files touched by this commit  1.32
Revision:403479
wen search for other commits by this committer
- Update to 1.32
- Add LICENSE
- Pet portlint
19 Oct 2014 07:38:12
Original commit files touched by this commit  0.87_1
Revision:371171
mva search for other commits by this committer
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
09 Jun 2014 11:21:53
Original commit files touched by this commit  0.87_1
Revision:357139
olgeni search for other commits by this committer
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
31 Jan 2014 12:30:39
Original commit files touched by this commit  0.87_1
Revision:341983
miwi search for other commits by this committer
- Convert to PYDISTUTILS_AUTOPLIST
- Stage support
- Bump PORTREV
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.87
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
23 Dec 2011 08:05:00
Original commit files touched by this commit  0.87
wen search for other commits by this committer
- Update to 0.87
15 Feb 2011 01:59:12
Original commit files touched by this commit  0.8
wen search for other commits by this committer
- Update to 0.8
24 Feb 2010 01:30:47
Original commit files touched by this commit  0.7
wen search for other commits by this committer
- Update to 0.7

Feature safe:   yes
29 Dec 2009 13:39:14
Original commit files touched by this commit  0.6d
wen search for other commits by this committer
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
reader for python.

WWW:    http://simon.net.nz/articles/python-nexus

Number of commits found: 15

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
libXcursorDec 17
libXfont2Dec 17
libXfont2Dec 17
globalDec 16
jenkinsDec 15
jenkins-ltsDec 15
gitlabDec 14
nodeDec 14
node4Dec 14
node6Dec 14
node8Dec 14
torDec 14
asterisk13Dec 13
asterisk13*Dec 13
asterisk13*Dec 13

18 vulnerabilities affecting 90 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2017-12-17 18:50:28


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 32140
Broken 124
Deprecated 48
Ignore 360
Forbidden 0
Restricted 173
No CDROM 77
Vulnerable 41
Expired 10
Set to expire 40
Interactive 0
new 24 hours 2
new 48 hours11
new 7 days33
new fortnight108
new month42951

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2017 Dan Langille. All rights reserved.