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Port details
readseq Read and reformat biosequences, Java command-line version
2.1.19 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1.19Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-18 13:54:12
Last Update: 2021-04-18 14:20:28
Commit Hash: 1b6e856
Also Listed In: java
License: PD
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/readseq
  2. share/java/classes/readseq.jar
  3. /usr/local/share/licenses/readseq-2.1.19/catalog.mk
  4. /usr/local/share/licenses/readseq-2.1.19/LICENSE
  5. /usr/local/share/licenses/readseq-2.1.19/PD
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Dependency lines:
  • readseq>0:biology/readseq
To install the port:
cd /usr/ports/biology/readseq/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/readseq
  • pkg install readseq
PKGNAME: readseq
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
readseq
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd642.1.192.1.19
FreeBSD:11:armv6--
FreeBSD:11:i3862.1.192.1.19
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.1.19
FreeBSD:12:amd642.1.192.1.19
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.1.192.1.19
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-2.1.19
FreeBSD:13:amd642.1.192.1.19
FreeBSD:13:armv6--
FreeBSD:13:armv7-2.1.19
FreeBSD:13:i3862.1.192.1.19
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-2.1.19
FreeBSD:14:aarch642.1.19-
FreeBSD:14:amd642.1.19-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3862.1.19-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. java : java/openjdk8
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://sourceforge.net/projects/readseq/files/latest/
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Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
18 Apr 2021 14:20:28
 files touched by this commit commit hash:1b6e8568ce41da2e1b99539079b7eba22c8cc013  2.1.19
Jason W. Bacon (jwb) search for other commits by this committer
biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
18 Apr 2021 13:53:02
 files touched by this commit commit hash:49a1ada63293e4c27a396fb8997a238dd090e7de  2.1.19
Jason W. Bacon (jwb) search for other commits by this committer
biology/readseq: Read and reformat biosequences, Java command-line version

Sequence reading library developed by the Ribosomal Database Project.  It can
handle genbank, embl, fasta, fastq, sff and sto files, can read from files or
streams, and can handle indexing files.

Number of commits found: 2