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Port details
rubygem-bio-executables Collection of miscellaneous utilities for bioinformatics
1.0.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 1.0.0Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-07-24 07:10:30
Last Update: 2020-07-24 08:08:00
SVN Revision: 543010
Also Listed In: rubygems
License: BSD2CLAUSE RUBY
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (8 items)
Collapse this list.
  1. bin/br_biofetch.rb
  2. bin/br_bioflat.rb
  3. bin/br_biogetseq.rb
  4. bin/br_pmfetch.rb
  5. /usr/local/share/licenses/rubygem-bio-executables-1.0.0/catalog.mk
  6. /usr/local/share/licenses/rubygem-bio-executables-1.0.0/LICENSE
  7. /usr/local/share/licenses/rubygem-bio-executables-1.0.0/BSD2CLAUSE
  8. /usr/local/share/licenses/rubygem-bio-executables-1.0.0/RUBY
Collapse this list.
Dependency lines:
  • rubygem-bio-executables>0:biology/rubygem-bio-executables
To install the port: cd /usr/ports/biology/rubygem-bio-executables/ && make install clean
To add the package: pkg install rubygem-bio-executables
PKGNAME: rubygem-bio-executables
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
rubygem-bio-executables
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FreeBSD:11:amd641.0.01.0.0
FreeBSD:11:armv6--
FreeBSD:11:i3861.0.01.0.0
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FreeBSD:12:i3861.0.01.0.0
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Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. ruby26 : lang/ruby26
  2. gem26 : devel/ruby-gems
Runtime dependencies:
  1. rubygem-bio>=2.0.0 : biology/rubygem-bio
  2. rubygem-bio-old-biofetch-emulator>=0.0.1 : biology/rubygem-bio-old-biofetch-emulator
  3. ruby26 : lang/ruby26
  4. gem26 : devel/ruby-gems
Patch dependencies:
  1. ruby26 : lang/ruby26
  2. gem26 : devel/ruby-gems
Extract dependencies:
  1. ruby26 : lang/ruby26
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
Expand this list (1 items)
    Collapse this list.
  1. https://rubygems.org/downloads/
  2. Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Jul 2020 07:08:00
Original commit files touched by this commit  1.0.0
Revision:543010  Sanity Test Failure
sunpoet search for other commits by this committer
Add rubygem-bio-executables 1.0.0

bio-executables is a collection of miscellaneous utilities for bioinformatics
that were formerly part of the BioRuby core ("bio" gem). Because of reducing
complexity, they were moved to this gem.

This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-executables and many
more plugins are available at biogems.info.

WWW: https://github.com/bioruby/bioruby-executables

Number of commits found: 1

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