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Port details
sam2pairwise Show pairwise alignment for each read in a SAM file
1.0.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.0Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-07 20:36:08
Last Update: 2021-09-07 20:32:29
Commit Hash: e61df5e
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
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  1. bin/sam2pairwise
  2. /usr/local/share/licenses/sam2pairwise-1.0.0/catalog.mk
  3. /usr/local/share/licenses/sam2pairwise-1.0.0/LICENSE
  4. /usr/local/share/licenses/sam2pairwise-1.0.0/MIT
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Dependency lines:
  • sam2pairwise>0:biology/sam2pairwise
To install the port: cd /usr/ports/biology/sam2pairwise/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/sam2pairwise
  • pkg install sam2pairwise
PKGNAME: sam2pairwise
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
sam2pairwise
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd641.0.0-
FreeBSD:11:armv6--
FreeBSD:11:i3861.0.0-
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.0.0
FreeBSD:12:amd641.0.01.0.0
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.0.01.0.0
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-1.0.0
FreeBSD:13:amd641.0.01.0.0
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.0.01.0.0
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.0.0-
FreeBSD:14:amd641.0.0-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.0.0-
FreeBSD:14:mips--
FreeBSD:14:mips641.0.0-
FreeBSD:14:powerpc64--
 

This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
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  1. https://codeload.github.com/mlafave/sam2pairwise/tar.gz/v1.0.0?dummy=/
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Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Sep 2021 20:32:29
 files touched by this commit commit hash:e61df5e464758cb1d460c95b4fbb3855a4f7f6dc  1.0.0
jwb search for other commits by this committer
biology/sam2pairwise: Show pairwise alignment for each read in a SAM file

sam2pairwise takes a SAM file and uses the CIGAR and MD tag to
reconstruct the pairwise alignment of each read.

Number of commits found: 1