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Port details
seqan C++ sequence analysis template library
2.4.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.4.0Version of this port present on the latest quarterly branch.
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 2012-06-06 17:52:27
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
License: BSD3CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
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  1. /usr/local/share/licenses/seqan-2.4.0/catalog.mk
  2. /usr/local/share/licenses/seqan-2.4.0/LICENSE
  3. /usr/local/share/licenses/seqan-2.4.0/BSD3CLAUSE
  4. include/seqan/align.h
  5. include/seqan/align/align_base.h
  6. include/seqan/align/align_cols.h
  7. include/seqan/align/align_config.h
  8. include/seqan/align/align_interface_wrapper.h
  9. include/seqan/align/align_iterator_base.h
  10. include/seqan/align/align_metafunctions.h
  11. include/seqan/align/align_traceback.h
  12. include/seqan/align/aligned_sequence_concept.h
  13. include/seqan/align/alignment_algorithm_tags.h
  14. include/seqan/align/alignment_operations.h
  15. include/seqan/align/dp_algorithm_impl.h
  16. include/seqan/align/dp_align_simd_helper.h
  17. include/seqan/align/dp_band.h
  18. include/seqan/align/dp_cell.h
  19. include/seqan/align/dp_cell_affine.h
  20. include/seqan/align/dp_cell_dynamic.h
  21. include/seqan/align/dp_cell_linear.h
  22. include/seqan/align/dp_context.h
  23. include/seqan/align/dp_formula.h
  24. include/seqan/align/dp_formula_affine.h
  25. include/seqan/align/dp_formula_dynamic.h
  26. include/seqan/align/dp_formula_linear.h
  27. include/seqan/align/dp_matrix.h
  28. include/seqan/align/dp_matrix_navigator.h
  29. include/seqan/align/dp_matrix_navigator_score_matrix.h
  30. include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
  31. include/seqan/align/dp_matrix_navigator_trace_matrix.h
  32. include/seqan/align/dp_matrix_sparse.h
  33. include/seqan/align/dp_meta_info.h
  34. include/seqan/align/dp_profile.h
  35. include/seqan/align/dp_scout.h
  36. include/seqan/align/dp_scout_simd.h
  37. include/seqan/align/dp_setup.h
  38. include/seqan/align/dp_trace_segment.h
  39. include/seqan/align/dp_traceback_adaptor.h
  40. include/seqan/align/dp_traceback_impl.h
  41. include/seqan/align/evaluate_alignment.h
  42. include/seqan/align/fragment.h
  43. include/seqan/align/gap_anchor.h
  44. include/seqan/align/gapped_value_type.h
  45. include/seqan/align/gaps_anchor.h
  46. include/seqan/align/gaps_array.h
  47. include/seqan/align/gaps_base.h
  48. include/seqan/align/gaps_iterator_anchor.h
  49. include/seqan/align/gaps_iterator_array.h
  50. include/seqan/align/gaps_iterator_base.h
  51. include/seqan/align/global_alignment_banded.h
  52. include/seqan/align/global_alignment_hirschberg_impl.h
  53. include/seqan/align/global_alignment_myers_hirschberg_impl.h
  54. include/seqan/align/global_alignment_myers_impl.h
  55. include/seqan/align/global_alignment_specialized.h
  56. include/seqan/align/global_alignment_unbanded.h
  57. include/seqan/align/local_alignment_banded.h
  58. include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
  59. include/seqan/align/local_alignment_enumeration.h
  60. include/seqan/align/local_alignment_enumeration_banded.h
  61. include/seqan/align/local_alignment_enumeration_unbanded.h
  62. include/seqan/align/local_alignment_unbanded.h
  63. include/seqan/align/local_alignment_waterman_eggert_impl.h
  64. include/seqan/align/matrix_base.h
  65. include/seqan/align_extend.h
  66. include/seqan/align_extend/align_extend.h
  67. include/seqan/align_extend/align_extend_base.h
  68. include/seqan/align_extend/dp_scout_xdrop.h
  69. include/seqan/align_parallel.h
  70. include/seqan/align_parallel/async_wave_execution_interface.h
  71. include/seqan/align_parallel/dp_kernel_adaptor.h
  72. include/seqan/align_parallel/dp_parallel_execution_policies.h
  73. include/seqan/align_parallel/dp_parallel_scout.h
  74. include/seqan/align_parallel/dp_parallel_scout_simd.h
  75. include/seqan/align_parallel/dp_settings.h
  76. include/seqan/align_parallel/dp_traits.h
  77. include/seqan/align_parallel/parallel_align_interface.h
  78. include/seqan/align_parallel/wavefront_alignment_executor.h
  79. include/seqan/align_parallel/wavefront_alignment_result.h
  80. include/seqan/align_parallel/wavefront_alignment_scheduler.h
  81. include/seqan/align_parallel/wavefront_alignment_task.h
  82. include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h
  83. include/seqan/align_parallel/wavefront_task.h
  84. include/seqan/align_parallel/wavefront_task_event.h
  85. include/seqan/align_parallel/wavefront_task_executor.h
  86. include/seqan/align_parallel/wavefront_task_queue.h
  87. include/seqan/align_parallel/wavefront_task_scheduler.h
  88. include/seqan/align_parallel/wavefront_task_util.h
  89. include/seqan/align_profile.h
  90. include/seqan/align_profile/add_to_profile.h
  91. include/seqan/align_profile/score_profile_seq.h
  92. include/seqan/align_split.h
  93. include/seqan/align_split/align_split_interface.h
  94. include/seqan/align_split/dp_scout_split.h
  95. include/seqan/alignment_free.h
  96. include/seqan/alignment_free/af_d2.h
  97. include/seqan/alignment_free/af_d2star.h
  98. include/seqan/alignment_free/af_d2z.h
  99. include/seqan/alignment_free/af_n2.h
  100. include/seqan/alignment_free/alignment_free_base.h
  101. include/seqan/alignment_free/alignment_free_comparison.h
  102. include/seqan/alignment_free/kmer_functions.h
  103. include/seqan/arg_parse.h
  104. include/seqan/arg_parse/arg_parse_argument.h
  105. include/seqan/arg_parse/arg_parse_ctd_support.h
  106. include/seqan/arg_parse/arg_parse_doc.h
  107. include/seqan/arg_parse/arg_parse_exceptions.h
  108. include/seqan/arg_parse/arg_parse_option.h
  109. include/seqan/arg_parse/arg_parse_parse.h
  110. include/seqan/arg_parse/arg_parse_type_support.h
  111. include/seqan/arg_parse/arg_parse_version_check.h
  112. include/seqan/arg_parse/argument_parser.h
  113. include/seqan/arg_parse/tool_doc.h
  114. include/seqan/arg_parse/xml_support.h
  115. include/seqan/bam_io.h
  116. include/seqan/bam_io/bam_alignment_record.h
  117. include/seqan/bam_io/bam_alignment_record_util.h
  118. include/seqan/bam_io/bam_file.h
  119. include/seqan/bam_io/bam_header_record.h
  120. include/seqan/bam_io/bam_index_bai.h
  121. include/seqan/bam_io/bam_io_context.h
  122. include/seqan/bam_io/bam_sam_conversion.h
  123. include/seqan/bam_io/bam_scanner_cache.h
  124. include/seqan/bam_io/bam_tags_dict.h
  125. include/seqan/bam_io/cigar.h
  126. include/seqan/bam_io/read_bam.h
  127. include/seqan/bam_io/read_sam.h
  128. include/seqan/bam_io/write_bam.h
  129. include/seqan/bam_io/write_sam.h
  130. include/seqan/basic.h
  131. include/seqan/basic/aggregate_concept.h
  132. include/seqan/basic/allocator_chunkpool.h
  133. include/seqan/basic/allocator_interface.h
  134. include/seqan/basic/allocator_multipool.h
  135. include/seqan/basic/allocator_simple.h
  136. include/seqan/basic/allocator_singlepool.h
  137. include/seqan/basic/allocator_to_std.h
  138. include/seqan/basic/alphabet_adapt_builtins.h
  139. include/seqan/basic/alphabet_bio.h
  140. include/seqan/basic/alphabet_concept.h
  141. include/seqan/basic/alphabet_math.h
  142. include/seqan/basic/alphabet_profile.h
  143. include/seqan/basic/alphabet_qualities.h
  144. include/seqan/basic/alphabet_residue.h
  145. include/seqan/basic/alphabet_residue_funcs.h
  146. include/seqan/basic/alphabet_residue_tabs.h
  147. include/seqan/basic/alphabet_simple_type.h
  148. include/seqan/basic/alphabet_storage.h
  149. include/seqan/basic/array_construct_destruct.h
  150. include/seqan/basic/basic_aggregate.h
  151. include/seqan/basic/basic_allocator.h
  152. include/seqan/basic/basic_alphabet.h
  153. include/seqan/basic/basic_concept.h
  154. include/seqan/basic/basic_container.h
  155. include/seqan/basic/basic_debug.h
  156. include/seqan/basic/basic_device.h
  157. include/seqan/basic/basic_exception.h
  158. include/seqan/basic/basic_functors.h
  159. include/seqan/basic/basic_fundamental.h
  160. include/seqan/basic/basic_iterator.h
  161. include/seqan/basic/basic_math.h
  162. include/seqan/basic/basic_metaprogramming.h
  163. include/seqan/basic/basic_parallelism.h
  164. include/seqan/basic/basic_proxy.h
  165. include/seqan/basic/basic_smart_pointer.h
  166. include/seqan/basic/basic_stream.h
  167. include/seqan/basic/basic_tangle.h
  168. include/seqan/basic/basic_type.h
  169. include/seqan/basic/basic_view.h
  170. include/seqan/basic/boost_preprocessor_subset.h
  171. include/seqan/basic/builtin_functions.h
  172. include/seqan/basic/concept_checking.h
  173. include/seqan/basic/container_concept.h
  174. include/seqan/basic/debug_helper.h
  175. include/seqan/basic/debug_test_system.h
  176. include/seqan/basic/fundamental_chunking.h
  177. include/seqan/basic/fundamental_comparison.h
  178. include/seqan/basic/fundamental_concepts.h
  179. include/seqan/basic/fundamental_conversion.h
  180. include/seqan/basic/fundamental_metafunctions.h
  181. include/seqan/basic/fundamental_tags.h
  182. include/seqan/basic/fundamental_transport.h
  183. include/seqan/basic/holder_base.h
  184. include/seqan/basic/holder_simple.h
  185. include/seqan/basic/holder_tristate.h
  186. include/seqan/basic/hosted_type_interface.h
  187. include/seqan/basic/iterator_adapt_pointer.h
  188. include/seqan/basic/iterator_adapt_std.h
  189. include/seqan/basic/iterator_adaptor.h
  190. include/seqan/basic/iterator_base.h
  191. include/seqan/basic/iterator_concept.h
  192. include/seqan/basic/iterator_counting.h
  193. include/seqan/basic/iterator_interface.h
  194. include/seqan/basic/iterator_position.h
  195. include/seqan/basic/iterator_range.h
  196. include/seqan/basic/iterator_zip.h
  197. include/seqan/basic/macro_deprecated.h
  198. include/seqan/basic/math_functions.h
  199. include/seqan/basic/math_log_space_value.h
  200. include/seqan/basic/metaprogramming_control.h
  201. include/seqan/basic/metaprogramming_enable_if.h
  202. include/seqan/basic/metaprogramming_logic.h
  203. include/seqan/basic/metaprogramming_math.h
  204. include/seqan/basic/metaprogramming_type.h
  205. include/seqan/basic/metaprogramming_type_algebra.h
  206. include/seqan/basic/pair_base.h
  207. include/seqan/basic/pair_bit_compressed.h
  208. include/seqan/basic/pair_packed.h
  209. include/seqan/basic/profiling.h
  210. include/seqan/basic/property_map_concept.h
  211. include/seqan/basic/proxy_base.h
  212. include/seqan/basic/proxy_iterator.h
  213. include/seqan/basic/test_system.h
  214. include/seqan/basic/triple_base.h
  215. include/seqan/basic/triple_packed.h
  216. include/seqan/basic/tuple_base.h
  217. include/seqan/basic/tuple_bit_compressed.h
  218. include/seqan/basic/volatile_ptr.h
  219. include/seqan/bed_io.h
  220. include/seqan/bed_io/bed_file.h
  221. include/seqan/bed_io/bed_record.h
  222. include/seqan/bed_io/read_bed.h
  223. include/seqan/bed_io/write_bed.h
  224. include/seqan/blast.h
  225. include/seqan/blast/blast_base.h
  226. include/seqan/blast/blast_io_context.h
  227. include/seqan/blast/blast_record.h
  228. include/seqan/blast/blast_report_out.h
  229. include/seqan/blast/blast_statistics.h
  230. include/seqan/blast/blast_tabular.h
  231. include/seqan/blast/blast_tabular_in.h
  232. include/seqan/blast/blast_tabular_lowlevel.h
  233. include/seqan/blast/blast_tabular_out.h
  234. include/seqan/consensus.h
  235. include/seqan/consensus/consensus_aligner.h
  236. include/seqan/consensus/consensus_aligner_interface.h
  237. include/seqan/consensus/consensus_alignment_options.h
  238. include/seqan/consensus/consensus_base.h
  239. include/seqan/consensus/consensus_builder.h
  240. include/seqan/consensus/consensus_library.h
  241. include/seqan/consensus/consensus_realign.h
  242. include/seqan/consensus/consensus_score.h
  243. include/seqan/consensus/overlap_info_computation.h
  244. include/seqan/consensus/overlapper.h
  245. include/seqan/file.h
  246. include/seqan/file/file_base.h
  247. include/seqan/file/file_cstyle.h
  248. include/seqan/file/file_forwards.h
  249. include/seqan/file/file_interface.h
  250. include/seqan/file/file_mapping.h
  251. include/seqan/file/file_page.h
  252. include/seqan/file/string_external.h
  253. include/seqan/file/string_mmap.h
  254. include/seqan/find.h
  255. include/seqan/find/find_abndm.h
  256. include/seqan/find/find_ahocorasick.h
  257. include/seqan/find/find_base.h
  258. include/seqan/find/find_begin.h
  259. include/seqan/find/find_bndm.h
  260. include/seqan/find/find_bom.h
  261. include/seqan/find/find_hamming_simple.h
  262. include/seqan/find/find_horspool.h
  263. include/seqan/find/find_lambda.h
  264. include/seqan/find/find_multi.h
  265. include/seqan/find/find_multiple_bfam.h
  266. include/seqan/find/find_multiple_shiftand.h
  267. include/seqan/find/find_myers_ukkonen.h
  268. include/seqan/find/find_pattern_base.h
  269. include/seqan/find/find_pex.h
  270. include/seqan/find/find_score.h
  271. include/seqan/find/find_set_horspool.h
  272. include/seqan/find/find_shiftand.h
  273. include/seqan/find/find_shiftor.h
  274. include/seqan/find/find_simple.h
  275. include/seqan/find/find_wild_shiftand.h
  276. include/seqan/find/find_wumanber.h
  277. include/seqan/gff_io.h
  278. include/seqan/gff_io/gff_file.h
  279. include/seqan/gff_io/gff_io_base.h
  280. include/seqan/graph_algorithms.h
  281. include/seqan/graph_algorithms/all_pairs_shortest_path.h
  282. include/seqan/graph_algorithms/bellman_ford.h
  283. include/seqan/graph_algorithms/bipartite_matching.h
  284. include/seqan/graph_algorithms/breadth_first_search.h
  285. include/seqan/graph_algorithms/connected_components.h
  286. include/seqan/graph_algorithms/depth_first_search.h
  287. include/seqan/graph_algorithms/dijkstra.h
  288. include/seqan/graph_algorithms/floyd_warshall.h
  289. include/seqan/graph_algorithms/ford_fulkerson.h
  290. include/seqan/graph_algorithms/graph_algorithm_heap_tree.h
  291. include/seqan/graph_algorithms/graph_algorithm_hmm.h
  292. include/seqan/graph_algorithms/graph_algorithm_lis_his.h
  293. include/seqan/graph_algorithms/kruskal.h
  294. include/seqan/graph_algorithms/maximum_weighted_matching.h
  295. include/seqan/graph_algorithms/path_growing.h
  296. include/seqan/graph_algorithms/prim.h
  297. include/seqan/graph_algorithms/single_source_shortest_path.h
  298. include/seqan/graph_algorithms/strongly_connected_compnents.h
  299. include/seqan/graph_algorithms/topological_sort.h
  300. include/seqan/graph_algorithms/transitive_closure.h
  301. include/seqan/graph_algorithms/weakly_connected_components.h
  302. include/seqan/graph_algorithms/weighted_bipartite_matching.h
  303. include/seqan/graph_align.h
  304. include/seqan/graph_align/graph_algorithm_refine_align.h
  305. include/seqan/graph_align/graph_algorithm_refine_aligngraph.h
  306. include/seqan/graph_align/graph_algorithm_refine_annotation.h
  307. include/seqan/graph_align/graph_algorithm_refine_exact.h
  308. include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
  309. include/seqan/graph_align/graph_algorithm_refine_fragment.h
  310. include/seqan/graph_align/graph_algorithm_refine_inexact.h
  311. include/seqan/graph_align/graph_algorithm_refine_scoring.h
  312. include/seqan/graph_align/graph_impl_align.h
  313. include/seqan/graph_align/graph_impl_align_adapt.h
  314. include/seqan/graph_msa.h
  315. include/seqan/graph_msa/graph_align_tcoffee_base.h
  316. include/seqan/graph_msa/graph_align_tcoffee_distance.h
  317. include/seqan/graph_msa/graph_align_tcoffee_guidetree.h
  318. include/seqan/graph_msa/graph_align_tcoffee_io.h
  319. include/seqan/graph_msa/graph_align_tcoffee_kmer.h
  320. include/seqan/graph_msa/graph_align_tcoffee_library.h
  321. include/seqan/graph_msa/graph_align_tcoffee_msa.h
  322. include/seqan/graph_msa/graph_align_tcoffee_progressive.h
  323. include/seqan/graph_msa/graph_align_tcoffee_refinement.h
  324. include/seqan/graph_types.h
  325. include/seqan/graph_types/graph_base.h
  326. include/seqan/graph_types/graph_drawing.h
  327. include/seqan/graph_types/graph_edgestump.h
  328. include/seqan/graph_types/graph_idmanager.h
  329. include/seqan/graph_types/graph_impl_automaton.h
  330. include/seqan/graph_types/graph_impl_directed.h
  331. include/seqan/graph_types/graph_impl_hmm.h
  332. include/seqan/graph_types/graph_impl_oracle.h
  333. include/seqan/graph_types/graph_impl_tree.h
  334. include/seqan/graph_types/graph_impl_trie.h
  335. include/seqan/graph_types/graph_impl_undirected.h
  336. include/seqan/graph_types/graph_impl_wordgraph.h
  337. include/seqan/graph_types/graph_interface.h
  338. include/seqan/graph_types/graph_iterator.h
  339. include/seqan/graph_types/graph_iterator_adjacency.h
  340. include/seqan/graph_types/graph_iterator_bfs.h
  341. include/seqan/graph_types/graph_iterator_dfs.h
  342. include/seqan/graph_types/graph_iterator_edge.h
  343. include/seqan/graph_types/graph_iterator_outedge.h
  344. include/seqan/graph_types/graph_iterator_vertex.h
  345. include/seqan/graph_types/graph_utility_parsing.h
  346. include/seqan/graph_types/property_map_generic.h
  347. include/seqan/graph_types/property_map_internal.h
  348. include/seqan/graph_types/property_map_internal_pointer.h
  349. include/seqan/index.h
  350. include/seqan/index/find2_backtracking.h
  351. include/seqan/index/find2_base.h
  352. include/seqan/index/find2_functors.h
  353. include/seqan/index/find2_index.h
  354. include/seqan/index/find2_index_approx.h
  355. include/seqan/index/find2_index_multi.h
  356. include/seqan/index/find2_vstree_factory.h
  357. include/seqan/index/find_backtracking.h
  358. include/seqan/index/find_index.h
  359. include/seqan/index/find_index_approx.h
  360. include/seqan/index/find_index_binary.h
  361. include/seqan/index/find_index_esa.h
  362. include/seqan/index/find_index_lambda.h
  363. include/seqan/index/find_index_qgram.h
  364. include/seqan/index/find_pigeonhole.h
  365. include/seqan/index/find_quasar.h
  366. include/seqan/index/find_swift.h
  367. include/seqan/index/index_base.h
  368. include/seqan/index/index_bidirectional.h
  369. include/seqan/index/index_bidirectional_stree.h
  370. include/seqan/index/index_bifm.h
  371. include/seqan/index/index_bifm_stree.h
  372. include/seqan/index/index_bwt.h
  373. include/seqan/index/index_childtab.h
  374. include/seqan/index/index_device.h
  375. include/seqan/index/index_dfi.h
  376. include/seqan/index/index_esa_algs.h
  377. include/seqan/index/index_esa_algs_multi.h
  378. include/seqan/index/index_esa_base.h
  379. include/seqan/index/index_esa_drawing.h
  380. include/seqan/index/index_esa_stree.h
  381. include/seqan/index/index_fm.h
  382. include/seqan/index/index_fm_compressed_sa.h
  383. include/seqan/index/index_fm_compressed_sa_iterator.h
  384. include/seqan/index/index_fm_dox.h
  385. include/seqan/index/index_fm_lf_table.h
  386. include/seqan/index/index_fm_rank_dictionary_base.h
  387. include/seqan/index/index_fm_rank_dictionary_levels.h
  388. include/seqan/index/index_fm_rank_dictionary_naive.h
  389. include/seqan/index/index_fm_rank_dictionary_wt.h
  390. include/seqan/index/index_fm_right_array_binary_tree.h
  391. include/seqan/index/index_fm_right_array_binary_tree_iterator.h
  392. include/seqan/index/index_fm_sparse_string.h
  393. include/seqan/index/index_fm_stree.h
  394. include/seqan/index/index_forwards.h
  395. include/seqan/index/index_lcp.h
  396. include/seqan/index/index_lcp_tree.h
  397. include/seqan/index/index_pizzachili.h
  398. include/seqan/index/index_pizzachili_find.h
  399. include/seqan/index/index_pizzachili_string.h
  400. include/seqan/index/index_qgram.h
  401. include/seqan/index/index_qgram_bucketrefinement.h
  402. include/seqan/index/index_qgram_openaddressing.h
  403. include/seqan/index/index_qgram_stree.h
  404. include/seqan/index/index_sa_btree.h
  405. include/seqan/index/index_sa_bwtwalk.h
  406. include/seqan/index/index_sa_lss.h
  407. include/seqan/index/index_sa_mm.h
  408. include/seqan/index/index_sa_qsort.h
  409. include/seqan/index/index_sa_stree.h
  410. include/seqan/index/index_sa_truncated.h
  411. include/seqan/index/index_shawarma.h
  412. include/seqan/index/index_shims.h
  413. include/seqan/index/index_skew3.h
  414. include/seqan/index/index_skew7.h
  415. include/seqan/index/index_skew7_multi.h
  416. include/seqan/index/index_view.h
  417. include/seqan/index/index_wotd.h
  418. include/seqan/index/pipe_merger3.h
  419. include/seqan/index/pipe_merger7.h
  420. include/seqan/index/pizzachili_api.h
  421. include/seqan/index/pump_extender3.h
  422. include/seqan/index/pump_extender7.h
  423. include/seqan/index/pump_lcp_core.h
  424. include/seqan/index/pump_separator7.h
  425. include/seqan/index/radix.h
  426. include/seqan/index/repeat_base.h
  427. include/seqan/index/shape_base.h
  428. include/seqan/index/shape_gapped.h
  429. include/seqan/index/shape_minimizer.h
  430. include/seqan/index/shape_onegapped.h
  431. include/seqan/index/shape_predefined.h
  432. include/seqan/index/shape_threshold.h
  433. include/seqan/journaled_set.h
  434. include/seqan/journaled_set/journal_alignment_interface.h
  435. include/seqan/journaled_set/journal_alignment_traceback_adaptor.h
  436. include/seqan/journaled_set/journaled_set_base.h
  437. include/seqan/journaled_set/journaled_set_impl.h
  438. include/seqan/journaled_set/journaled_set_join.h
  439. include/seqan/journaled_set/journaled_set_join_config.h
  440. include/seqan/journaled_set/journaled_set_join_global_align_compact.h
  441. include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h
  442. include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h
  443. include/seqan/journaled_set/score_biaffine.h
  444. include/seqan/journaled_string_tree.h
  445. include/seqan/journaled_string_tree/delta_map.h
  446. include/seqan/journaled_string_tree/delta_map_entry.h
  447. include/seqan/journaled_string_tree/delta_map_iterator.h
  448. include/seqan/journaled_string_tree/delta_store.h
  449. include/seqan/journaled_string_tree/journaled_string_tree_base.h
  450. include/seqan/journaled_string_tree/journaled_string_tree_impl.h
  451. include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h
  452. include/seqan/journaled_string_tree/journaled_string_tree_traverser.h
  453. include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h
  454. include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h
  455. include/seqan/journaled_string_tree/jst_extension_base.h
  456. include/seqan/journaled_string_tree/jst_extension_horspool.h
  457. include/seqan/journaled_string_tree/jst_extension_myers_ukkonen.h
  458. include/seqan/journaled_string_tree/jst_extension_shiftand.h
  459. include/seqan/journaled_string_tree/jst_extension_shiftor.h
  460. include/seqan/journaled_string_tree/observable.h
  461. include/seqan/journaled_string_tree/stack_observer.h
  462. include/seqan/map.h
  463. include/seqan/map/map_adapter_stl.h
  464. include/seqan/map/map_base.h
  465. include/seqan/map/map_chooser.h
  466. include/seqan/map/map_skiplist.h
  467. include/seqan/map/map_vector.h
  468. include/seqan/map/sumlist.h
  469. include/seqan/map/sumlist_mini.h
  470. include/seqan/map/sumlist_skip.h
  471. include/seqan/math.h
  472. include/seqan/math/math_common_factor.h
  473. include/seqan/math/math_operators.h
  474. include/seqan/math/math_rational.h
  475. include/seqan/misc/accumulators.h
  476. include/seqan/misc/base.h
  477. include/seqan/misc/bit_twiddling.h
  478. include/seqan/misc/bit_twiddling_functors.h
  479. include/seqan/misc/dequeue.h
  480. include/seqan/misc/edit_environment.h
  481. include/seqan/misc/interval_tree.h
  482. include/seqan/misc/map.h
  483. include/seqan/misc/memset.h
  484. include/seqan/misc/name_store_cache.h
  485. include/seqan/misc/priority_type_base.h
  486. include/seqan/misc/priority_type_heap.h
  487. include/seqan/misc/set.h
  488. include/seqan/misc/svg.h
  489. include/seqan/misc/terminal.h
  490. include/seqan/misc/union_find.h
  491. include/seqan/modifier.h
  492. include/seqan/modifier/cyclic_shape.h
  493. include/seqan/modifier/modifier_alphabet.h
  494. include/seqan/modifier/modifier_alphabet_expansion.h
  495. include/seqan/modifier/modifier_cyclic_shape.h
  496. include/seqan/modifier/modifier_functors.h
  497. include/seqan/modifier/modifier_iterator.h
  498. include/seqan/modifier/modifier_padding.h
  499. include/seqan/modifier/modifier_position.h
  500. include/seqan/modifier/modifier_reverse.h
  501. include/seqan/modifier/modifier_shortcuts.h
  502. include/seqan/modifier/modifier_string.h
  503. include/seqan/modifier/modifier_view.h
  504. include/seqan/parallel.h
  505. include/seqan/parallel/enumerable_thread_local.h
  506. include/seqan/parallel/enumerable_thread_local_iterator.h
  507. include/seqan/parallel/parallel_algorithms.h
  508. include/seqan/parallel/parallel_atomic_misc.h
  509. include/seqan/parallel/parallel_atomic_primitives.h
  510. include/seqan/parallel/parallel_lock.h
  511. include/seqan/parallel/parallel_macros.h
  512. include/seqan/parallel/parallel_queue.h
  513. include/seqan/parallel/parallel_queue_suspendable.h
  514. include/seqan/parallel/parallel_resource_pool.h
  515. include/seqan/parallel/parallel_sequence.h
  516. include/seqan/parallel/parallel_serializer.h
  517. include/seqan/parallel/parallel_splitting.h
  518. include/seqan/parallel/parallel_tags.h
  519. include/seqan/parallel/parallel_thread_pool.h
  520. include/seqan/parse_lm.h
  521. include/seqan/parse_lm/local_match_store.h
  522. include/seqan/parse_lm/parse_blastn_tabular.h
  523. include/seqan/parse_lm/parse_lastz_general.h
  524. include/seqan/parse_lm/parse_stellar_gff.h
  525. include/seqan/pipe.h
  526. include/seqan/pipe/pipe_base.h
  527. include/seqan/pipe/pipe_caster.h
  528. include/seqan/pipe/pipe_counter.h
  529. include/seqan/pipe/pipe_echoer.h
  530. include/seqan/pipe/pipe_edit_environment.h
  531. include/seqan/pipe/pipe_filter.h
  532. include/seqan/pipe/pipe_iterator.h
  533. include/seqan/pipe/pipe_joiner.h
  534. include/seqan/pipe/pipe_namer.h
  535. include/seqan/pipe/pipe_sampler.h
  536. include/seqan/pipe/pipe_shifter.h
  537. include/seqan/pipe/pipe_source.h
  538. include/seqan/pipe/pipe_tupler.h
  539. include/seqan/pipe/pool_base.h
  540. include/seqan/pipe/pool_mapper.h
  541. include/seqan/pipe/pool_sorter.h
  542. include/seqan/platform.h
  543. include/seqan/random.h
  544. include/seqan/random/random_base.h
  545. include/seqan/random/random_beta.h
  546. include/seqan/random/random_util.h
  547. include/seqan/realign.h
  548. include/seqan/realign/realign_base.h
  549. include/seqan/realign/realign_helper_functions.h
  550. include/seqan/reduced_aminoacid.h
  551. include/seqan/reduced_aminoacid/reduced_aminoacid_base.h
  552. include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
  553. include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h
  554. include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h
  555. include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h
  556. include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h
  557. include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
  558. include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
  559. include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
  560. include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
  561. include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h
  562. include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h
  563. include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
  564. include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
  565. include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h
  566. include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h
  567. include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h
  568. include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h
  569. include/seqan/rna_io.h
  570. include/seqan/rna_io/bpseq_read_write.h
  571. include/seqan/rna_io/connect_read_write.h
  572. include/seqan/rna_io/dot_bracket_read_write.h
  573. include/seqan/rna_io/ebpseq_read_write.h
  574. include/seqan/rna_io/rna_header.h
  575. include/seqan/rna_io/rna_io_context.h
  576. include/seqan/rna_io/rna_record.h
  577. include/seqan/rna_io/rna_struct_file.h
  578. include/seqan/rna_io/stockholm_read_write.h
  579. include/seqan/rna_io/vienna_read_write.h
  580. include/seqan/roi_io.h
  581. include/seqan/roi_io/read_roi.h
  582. include/seqan/roi_io/roi_file.h
  583. include/seqan/roi_io/roi_io_context.h
  584. include/seqan/roi_io/roi_record.h
  585. include/seqan/roi_io/write_roi.h
  586. include/seqan/score.h
  587. include/seqan/score/score_base.h
  588. include/seqan/score/score_edit.h
  589. include/seqan/score/score_matrix.h
  590. include/seqan/score/score_matrix_data.h
  591. include/seqan/score/score_matrix_dyn.h
  592. include/seqan/score/score_matrix_io.h
  593. include/seqan/score/score_simd_wrapper.h
  594. include/seqan/score/score_simple.h
  595. include/seqan/seeds.h
  596. include/seqan/seeds/banded_chain_alignment.h
  597. include/seqan/seeds/banded_chain_alignment_impl.h
  598. include/seqan/seeds/banded_chain_alignment_profile.h
  599. include/seqan/seeds/banded_chain_alignment_scout.h
  600. include/seqan/seeds/banded_chain_alignment_traceback.h
  601. include/seqan/seeds/basic_iter_indirect.h
  602. include/seqan/seeds/seeds_base.h
  603. include/seqan/seeds/seeds_combination.h
  604. include/seqan/seeds/seeds_extension.h
  605. include/seqan/seeds/seeds_global_chaining.h
  606. include/seqan/seeds/seeds_global_chaining_base.h
  607. include/seqan/seeds/seeds_global_chaining_gusfield.h
  608. include/seqan/seeds/seeds_seed_base.h
  609. include/seqan/seeds/seeds_seed_chained.h
  610. include/seqan/seeds/seeds_seed_diagonal.h
  611. include/seqan/seeds/seeds_seed_set_base.h
  612. include/seqan/seeds/seeds_seed_set_non_scored.h
  613. include/seqan/seeds/seeds_seed_set_scored.h
  614. include/seqan/seeds/seeds_seed_set_unordered.h
  615. include/seqan/seeds/seeds_seed_simple.h
  616. include/seqan/seq_io.h
  617. include/seqan/seq_io/bam_sam.h
  618. include/seqan/seq_io/fai_index.h
  619. include/seqan/seq_io/fasta_fastq.h
  620. include/seqan/seq_io/genomic_region.h
  621. include/seqan/seq_io/read_embl.h
  622. include/seqan/seq_io/read_genbank.h
  623. include/seqan/seq_io/sequence_file.h
  624. include/seqan/sequence.h
  625. include/seqan/sequence/adapt_array_pointer.h
  626. include/seqan/sequence/adapt_stl_container.h
  627. include/seqan/sequence/container_view.h
  628. include/seqan/sequence/container_view_zip.h
  629. include/seqan/sequence/iter_concat_virtual.h
  630. include/seqan/sequence/segment_base.h
  631. include/seqan/sequence/segment_infix.h
  632. include/seqan/sequence/segment_prefix.h
  633. include/seqan/sequence/segment_suffix.h
  634. include/seqan/sequence/segment_utils.h
  635. include/seqan/sequence/sequence_concatenator.h
  636. include/seqan/sequence/sequence_forwards.h
  637. include/seqan/sequence/sequence_interface.h
  638. include/seqan/sequence/sequence_lexical.h
  639. include/seqan/sequence/sequence_shortcuts.h
  640. include/seqan/sequence/string_alloc.h
  641. include/seqan/sequence/string_array.h
  642. include/seqan/sequence/string_base.h
  643. include/seqan/sequence/string_block.h
  644. include/seqan/sequence/string_cstyle.h
  645. include/seqan/sequence/string_packed.h
  646. include/seqan/sequence/string_packed_old.h
  647. include/seqan/sequence/string_set_base.h
  648. include/seqan/sequence/string_set_concat_direct.h
  649. include/seqan/sequence/string_set_dependent_generous.h
  650. include/seqan/sequence/string_set_dependent_tight.h
  651. include/seqan/sequence/string_set_owner.h
  652. include/seqan/sequence/string_set_segment.h
  653. include/seqan/sequence/string_set_view.h
  654. include/seqan/sequence_journaled.h
  655. include/seqan/sequence_journaled/journal_entries_sorted_array.h
  656. include/seqan/sequence_journaled/journal_entry.h
  657. include/seqan/sequence_journaled/sequence_journaled.h
  658. include/seqan/sequence_journaled/sequence_journaled_iterator.h
  659. include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
  660. include/seqan/simd.h
  661. include/seqan/simd/simd_base.h
  662. include/seqan/simd/simd_base_seqan_impl.h
  663. include/seqan/simd/simd_base_seqan_impl_avx2.h
  664. include/seqan/simd/simd_base_seqan_impl_avx512.h
  665. include/seqan/simd/simd_base_seqan_impl_sse4.2.h
  666. include/seqan/simd/simd_base_seqan_interface.h
  667. include/seqan/simd/simd_base_umesimd_impl.h
  668. include/seqan/simple_intervals_io.h
  669. include/seqan/simple_intervals_io/simple_intervals_file.h
  670. include/seqan/simple_intervals_io/simple_intervals_io.h
  671. include/seqan/statistics.h
  672. include/seqan/statistics/statistics_base.h
  673. include/seqan/statistics/statistics_markov_model.h
  674. include/seqan/store.h
  675. include/seqan/store/store_align.h
  676. include/seqan/store/store_align_intervals.h
  677. include/seqan/store/store_all.h
  678. include/seqan/store/store_annotation.h
  679. include/seqan/store/store_base.h
  680. include/seqan/store/store_contig.h
  681. include/seqan/store/store_intervaltree.h
  682. include/seqan/store/store_io.h
  683. include/seqan/store/store_io_gff.h
  684. include/seqan/store/store_io_sam.h
  685. include/seqan/store/store_io_ucsc.h
  686. include/seqan/store/store_library.h
  687. include/seqan/store/store_matepair.h
  688. include/seqan/store/store_read.h
  689. include/seqan/stream.h
  690. include/seqan/stream/adapt_ios.h
  691. include/seqan/stream/buffered_stream.h
  692. include/seqan/stream/file_stream.h
  693. include/seqan/stream/formatted_file.h
  694. include/seqan/stream/guess_format.h
  695. include/seqan/stream/iostream_bgzf.h
  696. include/seqan/stream/iostream_bzip2.h
  697. include/seqan/stream/iostream_bzip2_impl.h
  698. include/seqan/stream/iostream_zip.h
  699. include/seqan/stream/iostream_zip_impl.h
  700. include/seqan/stream/iostream_zutil.h
  701. include/seqan/stream/iter_stream.h
  702. include/seqan/stream/lexical_cast.h
  703. include/seqan/stream/stream_base.h
  704. include/seqan/stream/stream_compressor.h
  705. include/seqan/stream/tokenization.h
  706. include/seqan/stream/virtual_stream.h
  707. include/seqan/system.h
  708. include/seqan/system/file_async.h
  709. include/seqan/system/file_directory.h
  710. include/seqan/system/file_forwards.h
  711. include/seqan/system/file_sync.h
  712. include/seqan/system/system_base.h
  713. include/seqan/system/system_event_win.h
  714. include/seqan/system/system_forwards.h
  715. include/seqan/tabix_io.h
  716. include/seqan/tabix_io/tabix_index_tbi.h
  717. include/seqan/translation.h
  718. include/seqan/translation/translation.h
  719. include/seqan/translation/translation_tables.h
  720. include/seqan/ucsc_io.h
  721. include/seqan/ucsc_io/ucsc_file.h
  722. include/seqan/ucsc_io/ucsc_io.h
  723. include/seqan/ucsc_io/ucsc_record.h
  724. include/seqan/vcf_io.h
  725. include/seqan/vcf_io/read_vcf.h
  726. include/seqan/vcf_io/vcf_file.h
  727. include/seqan/vcf_io/vcf_header.h
  728. include/seqan/vcf_io/vcf_header_record.h
  729. include/seqan/vcf_io/vcf_io_context.h
  730. include/seqan/vcf_io/vcf_record.h
  731. include/seqan/vcf_io/write_vcf.h
  732. include/seqan/version.h
  733. lib/cmake/seqan/seqan-config.cmake
  734. libdata/pkgconfig/seqan-2.pc
  735. @owner
  736. @group
  737. @mode
Collapse this list.
Dependency lines:
  • seqan>0:biology/seqan
Conflicts:
CONFLICTS:
  • seqan1-[0-9]*
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port: cd /usr/ports/biology/seqan/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/seqan
  • pkg install seqan
PKGNAME: seqan
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
seqan
ABIlatestquarterly
FreeBSD:11:aarch642.4.02.4.0
FreeBSD:11:amd642.4.02.4.0
FreeBSD:11:armv62.1.1_12.4.0
FreeBSD:11:i3862.4.02.4.0
FreeBSD:11:mips--
FreeBSD:11:mips642.1.1_12.4.0
FreeBSD:12:aarch642.4.02.4.0
FreeBSD:12:amd642.4.02.4.0
FreeBSD:12:armv62.4.02.4.0
FreeBSD:12:armv72.4.02.4.0
FreeBSD:12:i3862.4.02.4.0
FreeBSD:12:mips--
FreeBSD:12:mips642.4.02.4.0
FreeBSD:12:powerpc64-2.4.0
FreeBSD:13:aarch642.4.02.4.0
FreeBSD:13:amd642.4.02.4.0
FreeBSD:13:armv62.4.02.4.0
FreeBSD:13:armv72.4.02.4.0
FreeBSD:13:i3862.4.02.4.0
FreeBSD:13:mips--
FreeBSD:13:mips642.4.02.4.0
FreeBSD:13:powerpc642.4.02.4.0
FreeBSD:14:aarch642.4.0-
FreeBSD:14:amd642.4.0-
FreeBSD:14:armv62.4.0-
FreeBSD:14:armv72.4.0-
FreeBSD:14:i3862.4.0-
FreeBSD:14:mips--
FreeBSD:14:mips642.4.0-
FreeBSD:14:powerpc642.4.0-
 

This port is required by:
for Build

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. biology/unanimity*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://packages.seqan.de/seqan-library/
Collapse this list.
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2016-05-10
    Affects: users of biology/seqan
    Author: junovitch@FreeBSD.org
    Reason: 
      The biology/seqan port has been split into biology/seqan (only the
      library) and biology/seqan-apps for the programs based on SeqAn. Both
      ports are based on version 2.1.1 of the SeqAn repository. There is a new
      biology/seqan1 port with version 1.3 of SeqAn for backwards compatibility,
      but this port will likely be deprecated in the next year so please update
      your software to SeqAn2.
    
    

Number of commits found: 20

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.4.0
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
10 Mar 2018 06:21:37
Original commit files touched by this commit Revision:464043  2.4.0
yuri search for other commits by this committer
biology/seqan-apps, biology/seqan: Update to 2.4.0

Port changes for biology/seqan-apps:
* Changed to DISTVERSION
* Updated COMMENT
* Added USES=compiler:openmp
* Removed BROKEN_xx (upstream now claims support for these architectures)
* Removed USE_GCC
* Added SSE4/AVX2/NATIVE SIMD options

Port changes for biology/seqan:
* Changed to DISTVERSION
* Added NO_ARCH
* Added PORTDOCS=*
* Updated do-install

PR:		225682
Submitted by:	Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
Approved by:	tcberner (mentor, implicit)
14 Sep 2016 19:38:58
Original commit files touched by this commit Revision:422156  2.2.0
pawel search for other commits by this committer
- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
- Fix spelling in pkg-descr

PR:		212682 [1]
Submitted by:	Hannes Hauswedell (maintainer) [1]
27 May 2016 16:10:36
Original commit files touched by this commit Revision:415945  2.1.1_1
amdmi3 search for other commits by this committer
- Do install cmake and pkgconfig modules
- While here, switch to options helpers

PR:		209710
Submitted by:	h2+fbsdports@fsfe.org (maintainer)
10 May 2016 01:05:23
Original commit files touched by this commit Revision:414898  2.1.1
junovitch search for other commits by this committer
biology/seqan: update 1.3.1 -> 2.1.1
biology/seqan1: create port from current SeqAn 1.3.1 for legacy usage
UPDATING: document SeqAn updates and seqan1 port for legacy usage

PR:		204127
Submitted by:	Hannes Hauswedell <h2+fbsdports@fsfe.org>
21 Mar 2015 11:53:28
Original commit files touched by this commit Revision:381791  1.3.1_3
marino search for other commits by this committer
biology/segan: Limit GCC to 4.8 while waiting for update

Due to questionable c++, GCC 4.9 and newer cannot build seqan.  An update
has been in the works that will enable clang compilers and all versions
of GCC to build seqan, but it is not quite ready yet.  While waiting for
it, limit the version of GCC used to 4.8.

PR:	196851
20 Oct 2014 07:10:48
Original commit files touched by this commit Revision:371237  1.3.1_3
bapt search for other commits by this committer
Cleanup plist
19 Oct 2014 07:38:12
Original commit files touched by this commit Revision:371171  1.3.1_3
mva search for other commits by this committer
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
10 Sep 2014 20:50:37
Original commit files touched by this commit Revision:367888  1.3.1_3
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
10 Jul 2014 22:29:52
Original commit files touched by this commit Revision:361497  1.3.1_2
adamw search for other commits by this committer
Use gcc on all platforms.

PR:		191692
Submitted by:	maintainer
01 Jun 2014 11:42:17
Original commit files touched by this commit Revision:356100  1.3.1_2
ohauer search for other commits by this committer
- add stage support
- adjust BSDn license
10 Mar 2014 20:55:22
Original commit files touched by this commit Revision:347809  1.3.1_2
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
07 Mar 2014 15:52:40
Original commit files touched by this commit Revision:347402  1.3.1_1
bapt search for other commits by this committer
Convert b* to USES=zip
26 Oct 2013 00:52:36
Original commit files touched by this commit Revision:331644  1.3.1_1
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  1.3.1
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
17 Aug 2013 16:27:24
Original commit files touched by this commit Revision:324851  1.3.1
gerald search for other commits by this committer
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.

Right now this is a noop in the former case and a noop in the latter
case unless lang/gcc44 has been installed explicitly.

This puts a bit more emphasis on standardizing on a canonical version
"current" GCC and makes it easier to update that canonical version
by changing the default in Mk/bsd.gcc.mk and updating the lang/gcc port.

That is, USE_GCC=yes means "use a decent/modern version of GCC" without
having to worry about details.

Approved by:	portmgr (bdrewery)
22 Mar 2013 20:06:15
Original commit files touched by this commit Revision:314960  1.3.1
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
21 Jul 2012 22:20:33
Original commit files touched by this commit   1.3.1
gerald search for other commits by this committer
Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.

Approved by:	maintainer
07 Jun 2012 13:04:53
Original commit files touched by this commit   1.3.1
amdmi3 search for other commits by this committer
- Fix maintainer email

Submitted by:   maintainer via private email
06 Jun 2012 17:51:33
Original commit files touched by this commit   1.3.1
amdmi3 search for other commits by this committer
SeqAn is an open source C++ library of efficient algorithms
and data structures for the analysis of sequences with the
focus on biological data. The library is licensed under the
3-clause BSD license except the applications which are GPL.

WWW: http://www.seqan.de/

PR:             167571
Submitted by:   Hannes <h2+fbsdports@fsfe.org>

Number of commits found: 20