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Port details
seqan1 C++ Sequence Analysis Library
1.3.1_4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 10 May 2016 01:05:34
License: BSD3CLAUSE
SeqAn is an open source C++ library of efficient algorithms
and data structures for the analysis of sequences with the
focus on biological data.

This port includes only the library, the apps have been
moved to biology/seqan-apps. This is the last release of
the version 1 API, it is highly recommended to upgrade to
biology/seqan (version 2).

WWW: http://www.seqan.de/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (1986 items)
  1. /usr/local/share/licenses/seqan1-1.3.1_4/catalog.mk
  2. /usr/local/share/licenses/seqan1-1.3.1_4/LICENSE
  3. /usr/local/share/licenses/seqan1-1.3.1_4/BSD3CLAUSE
  4. include/seqan.h
  5. include/seqan/LICENSE
  6. include/seqan/align.h
  7. include/seqan/align/align_algorithms.h
  8. include/seqan/align/align_base.h
  9. include/seqan/align/align_cols_base.h
  10. include/seqan/align/align_dynprog.h
  11. include/seqan/align/align_generated_forwards.h
  12. include/seqan/align/align_hirschberg.h
  13. include/seqan/align/align_iterator_base.h
  14. include/seqan/align/align_local_dynprog.h
  15. include/seqan/align/align_local_dynprog_banded.h
  16. include/seqan/align/align_myers.h
  17. include/seqan/align/align_trace.h
  18. include/seqan/align/gaps_array.h
  19. include/seqan/align/gaps_base.h
  20. include/seqan/align/gaps_iterator_base.h
  21. include/seqan/align/gaps_sumlist.h
  22. include/seqan/align/hirschberg_set.h
  23. include/seqan/align/matrix_base.h
  24. include/seqan/basic.h
  25. include/seqan/basic/basic_aggregates.h
  26. include/seqan/basic/basic_allocator_chunkpool.h
  27. include/seqan/basic/basic_allocator_interface.h
  28. include/seqan/basic/basic_allocator_multipool.h
  29. include/seqan/basic/basic_allocator_simple.h
  30. include/seqan/basic/basic_allocator_singlepool.h
  31. include/seqan/basic/basic_allocator_to_std.h
  32. include/seqan/basic/basic_alphabet_interface.h
  33. include/seqan/basic/basic_alphabet_interface2.h
  34. include/seqan/basic/basic_alphabet_simple.h
  35. include/seqan/basic/basic_alphabet_simple_tabs.h
  36. include/seqan/basic/basic_alphabet_trait_basic.h
  37. include/seqan/basic/basic_compare.h
  38. include/seqan/basic/basic_converter.h
  39. include/seqan/basic/basic_counted_ptr.h
  40. include/seqan/basic/basic_debug.h
  41. include/seqan/basic/basic_definition.h
  42. include/seqan/basic/basic_forwards.h
  43. include/seqan/basic/basic_generated_forwards.h
  44. include/seqan/basic/basic_holder.h
  45. include/seqan/basic/basic_holder_dynamic.h
  46. include/seqan/basic/basic_host.h
  47. include/seqan/basic/basic_iterator.h
  48. include/seqan/basic/basic_iterator_adapt_std.h
  49. include/seqan/basic/basic_iterator_adaptor.h
  50. include/seqan/basic/basic_iterator_base.h
  51. include/seqan/basic/basic_iterator_position.h
  52. include/seqan/basic/basic_iterator_simple.h
  53. include/seqan/basic/basic_logvalue.h
  54. include/seqan/basic/basic_metaprogramming.h
  55. include/seqan/basic/basic_operator.h
  56. include/seqan/basic/basic_parallelism.h
  57. include/seqan/basic/basic_pointer.h
  58. include/seqan/basic/basic_profchar.h
  59. include/seqan/basic/basic_profile.h
  60. include/seqan/basic/basic_proxy.h
  61. include/seqan/basic/basic_sse2.h
  62. include/seqan/basic/basic_tag.h
  63. include/seqan/basic/basic_testing.h
  64. include/seqan/basic/basic_transport.h
  65. include/seqan/basic/basic_type.h
  66. include/seqan/basic/basic_volatile_ptr.h
  67. include/seqan/blast.h
  68. include/seqan/blast/blast_base.h
  69. include/seqan/blast/blast_generated_forwards.h
  70. include/seqan/blast/blast_hit.h
  71. include/seqan/blast/blast_hit_iterator.h
  72. include/seqan/blast/blast_hsp.h
  73. include/seqan/blast/blast_hsp_iterator.h
  74. include/seqan/blast/blast_iterator.h
  75. include/seqan/blast/blast_parsing.h
  76. include/seqan/blast/blast_report.h
  77. include/seqan/blast/blast_run.h
  78. include/seqan/blast/blast_stream_hit.h
  79. include/seqan/blast/blast_stream_hit_iterator.h
  80. include/seqan/blast/blast_stream_hsp_iterator.h
  81. include/seqan/blast/blast_stream_report.h
  82. include/seqan/chaining.h
  83. include/seqan/chaining/chain_base.h
  84. include/seqan/chaining/chain_generic.h
  85. include/seqan/chaining/chain_meta_fragment.h
  86. include/seqan/chaining/chain_point.h
  87. include/seqan/chaining/chain_wrapper_point.h
  88. include/seqan/chaining/chaining_generated_forwards.h
  89. include/seqan/chaining/fragment.h
  90. include/seqan/chaining/geom_distribution.h
  91. include/seqan/chaining/range_max_tree.h
  92. include/seqan/chaining/range_tree.h
  93. include/seqan/chaining/rmt_base.h
  94. include/seqan/chaining/rmt_common_algos.h
  95. include/seqan/chaining/rmt_compl_algos.h
  96. include/seqan/chaining/rmt_def_algos.h
  97. include/seqan/chaining/rmt_skip_base_element.h
  98. include/seqan/chaining/rmt_skip_element.h
  99. include/seqan/chaining/rt_base.h
  100. include/seqan/chaining/rt_common_algos.h
  101. include/seqan/chaining/rt_impl.h
  102. include/seqan/chaining/rt_skip_base_element.h
  103. include/seqan/chaining/rt_skip_element.h
  104. include/seqan/chaining/rt_sl_base.h
  105. include/seqan/chaining/rt_sl_compl_algos.h
  106. include/seqan/chaining/rt_sl_def_algos.h
  107. include/seqan/chaining/rt_sl_impl.h
  108. include/seqan/chaining/score_chain.h
  109. include/seqan/chaining/score_chain_sop.h
  110. include/seqan/chaining/score_manhattan.h
  111. include/seqan/chaining/score_zero.h
  112. include/seqan/chaining/skip_base_element.h
  113. include/seqan/chaining/skip_element.h
  114. include/seqan/chaining/skip_list.h
  115. include/seqan/chaining/skip_list_base.h
  116. include/seqan/chaining/skip_list_dynamic.h
  117. include/seqan/chaining/skip_list_impl.h
  118. include/seqan/chaining/skip_list_iterator.h
  119. include/seqan/chaining/skip_list_type.h
  120. include/seqan/chaining/skip_pool_alloc.h
  121. include/seqan/chaining/tree_chain.h
  122. include/seqan/chaining/tree_chain_sop.h
  123. include/seqan/chaining/tree_chain_utils.h
  124. include/seqan/consensus.h
  125. include/seqan/consensus/consensus_base.h
  126. include/seqan/consensus/consensus_generated_forwards.h
  127. include/seqan/consensus/consensus_library.h
  128. include/seqan/consensus/consensus_realign.h
  129. include/seqan/consensus/consensus_score.h
  130. include/seqan/file.h
  131. include/seqan/file/chunk_collector.h
  132. include/seqan/file/cstream.h
  133. include/seqan/file/file_array.h
  134. include/seqan/file/file_base.h
  135. include/seqan/file/file_cstyle.h
  136. include/seqan/file/file_filereader.h
  137. include/seqan/file/file_filereaderiterator.h
  138. include/seqan/file/file_format.h
  139. include/seqan/file/file_format_cgviz.h
  140. include/seqan/file/file_format_embl.h
  141. include/seqan/file/file_format_fasta.h
  142. include/seqan/file/file_format_fasta_align.h
  143. include/seqan/file/file_format_genbank.h
  144. include/seqan/file/file_format_guess.h
  145. include/seqan/file/file_format_mmap.h
  146. include/seqan/file/file_format_raw.h
  147. include/seqan/file/file_forwards.h
  148. include/seqan/file/file_generated_forwards.h
  149. include/seqan/file/file_page.h
  150. include/seqan/file/file_page_raid0.h
  151. include/seqan/file/meta.h
  152. include/seqan/file/stream.h
  153. include/seqan/file/stream_algorithms.h
  154. include/seqan/file/string_external.h
  155. include/seqan/file/string_mmap.h
  156. include/seqan/find.h
  157. include/seqan/find/find_abndm.h
  158. include/seqan/find/find_ahocorasick.h
  159. include/seqan/find/find_base.h
  160. include/seqan/find/find_begin.h
  161. include/seqan/find/find_bndm.h
  162. include/seqan/find/find_bom.h
  163. include/seqan/find/find_generated_forwards.h
  164. include/seqan/find/find_hamming_simple.h
  165. include/seqan/find/find_horspool.h
  166. include/seqan/find/find_multi.h
  167. include/seqan/find/find_multiple_bfam.h
  168. include/seqan/find/find_multiple_shiftand.h
  169. include/seqan/find/find_myers_ukkonen.h
  170. include/seqan/find/find_pattern_base.h
  171. include/seqan/find/find_pex.h
  172. include/seqan/find/find_score.h
  173. include/seqan/find/find_set_horspool.h
  174. include/seqan/find/find_shiftand.h
  175. include/seqan/find/find_shiftor.h
  176. include/seqan/find/find_simple.h
  177. include/seqan/find/find_wild_shiftand.h
  178. include/seqan/find/find_wumanber.h
  179. include/seqan/find2.h
  180. include/seqan/find2/find2_generated_forwards.h
  181. include/seqan/find2/find_approx_dpsearch.h
  182. include/seqan/find2/find_approx_find_begin.h
  183. include/seqan/find2/find_base.h
  184. include/seqan/find2/find_exact_shiftand.h
  185. include/seqan/find2/find_exact_simple.h
  186. include/seqan/find2/find_finder_default.h
  187. include/seqan/find2/find_hamming_simple.h
  188. include/seqan/find2/find_multiple_exact_simple.h
  189. include/seqan/find2/find_pattern_wild_shiftand.h
  190. include/seqan/find_motif.h
  191. include/seqan/find_motif/em_algorithm.h
  192. include/seqan/find_motif/find_motif_base.h
  193. include/seqan/find_motif/find_motif_epatternbranching.h
  194. include/seqan/find_motif/find_motif_generated_forwards.h
  195. include/seqan/find_motif/find_motif_pms1.h
  196. include/seqan/find_motif/find_motif_pmsp.h
  197. include/seqan/find_motif/find_motif_projection.h
  198. include/seqan/find_motif/frequency_distribution.h
  199. include/seqan/find_motif/profile.h
  200. include/seqan/find_motif/pseudocount_base.h
  201. include/seqan/find_motif/pseudocount_mode_c.h
  202. include/seqan/find_motif/pseudocount_mode_p.h
  203. include/seqan/find_motif/sequence_model_types.h
  204. include/seqan/graph_algorithms.h
  205. include/seqan/graph_algorithms/graph_algorithm.h
  206. include/seqan/graph_algorithms/graph_algorithm_heap_tree.h
  207. include/seqan/graph_algorithms/graph_algorithm_hmm.h
  208. include/seqan/graph_algorithms/graph_algorithm_lis_his.h
  209. include/seqan/graph_algorithms/graph_algorithms_generated_forwards.h
  210. include/seqan/graph_align.h
  211. include/seqan/graph_align/graph_align_banded_gotoh.h
  212. include/seqan/graph_align/graph_align_banded_needleman_wunsch.h
  213. include/seqan/graph_align/graph_align_banded_smith_waterman_clump.h
  214. include/seqan/graph_align/graph_align_base.h
  215. include/seqan/graph_align/graph_align_config.h
  216. include/seqan/graph_align/graph_align_generated_forwards.h
  217. include/seqan/graph_align/graph_align_gotoh.h
  218. include/seqan/graph_align/graph_align_hirschberg.h
  219. include/seqan/graph_align/graph_align_interface.h
  220. include/seqan/graph_align/graph_align_needleman_wunsch.h
  221. include/seqan/graph_align/graph_align_smith_waterman.h
  222. include/seqan/graph_align/graph_align_smith_waterman_clump.h
  223. include/seqan/graph_msa.h
  224. include/seqan/graph_msa/graph_align_tcoffee_base.h
  225. include/seqan/graph_msa/graph_align_tcoffee_distance.h
  226. include/seqan/graph_msa/graph_align_tcoffee_guidetree.h
  227. include/seqan/graph_msa/graph_align_tcoffee_io.h
  228. include/seqan/graph_msa/graph_align_tcoffee_kmer.h
  229. include/seqan/graph_msa/graph_align_tcoffee_library.h
  230. include/seqan/graph_msa/graph_align_tcoffee_msa.h
  231. include/seqan/graph_msa/graph_align_tcoffee_progressive.h
  232. include/seqan/graph_msa/graph_align_tcoffee_refinement.h
  233. include/seqan/graph_msa/graph_msa_generated_forwards.h
  234. include/seqan/graph_types.h
  235. include/seqan/graph_types/graph_base.h
  236. include/seqan/graph_types/graph_drawing.h
  237. include/seqan/graph_types/graph_edgestump.h
  238. include/seqan/graph_types/graph_idmanager.h
  239. include/seqan/graph_types/graph_impl_automaton.h
  240. include/seqan/graph_types/graph_impl_directed.h
  241. include/seqan/graph_types/graph_impl_fragment.h
  242. include/seqan/graph_types/graph_impl_hmm.h
  243. include/seqan/graph_types/graph_impl_oracle.h
  244. include/seqan/graph_types/graph_impl_tree.h
  245. include/seqan/graph_types/graph_impl_trie.h
  246. include/seqan/graph_types/graph_impl_undirected.h
  247. include/seqan/graph_types/graph_impl_wordgraph.h
  248. include/seqan/graph_types/graph_interface.h
  249. include/seqan/graph_types/graph_iterator.h
  250. include/seqan/graph_types/graph_iterator_adjacency.h
  251. include/seqan/graph_types/graph_iterator_bfs.h
  252. include/seqan/graph_types/graph_iterator_dfs.h
  253. include/seqan/graph_types/graph_iterator_edge.h
  254. include/seqan/graph_types/graph_iterator_outedge.h
  255. include/seqan/graph_types/graph_iterator_vertex.h
  256. include/seqan/graph_types/graph_property.h
  257. include/seqan/graph_types/graph_types_generated_forwards.h
  258. include/seqan/graph_types/graph_utility_parsing.h
  259. include/seqan/index.h
  260. include/seqan/index/find_index.h
  261. include/seqan/index/find_index_approx.h
  262. include/seqan/index/find_index_esa.h
  263. include/seqan/index/find_index_qgram.h
  264. include/seqan/index/find_quasar.h
  265. include/seqan/index/find_swift.h
  266. include/seqan/index/index_base.h
  267. include/seqan/index/index_bwt.h
  268. include/seqan/index/index_childtab.h
  269. include/seqan/index/index_dfi.h
  270. include/seqan/index/index_esa_algs.h
  271. include/seqan/index/index_esa_algs_multi.h
  272. include/seqan/index/index_esa_base.h
  273. include/seqan/index/index_esa_drawing.h
  274. include/seqan/index/index_esa_stree.h
  275. include/seqan/index/index_generated_forwards.h
  276. include/seqan/index/index_lcp.h
  277. include/seqan/index/index_lcp_tree.h
  278. include/seqan/index/index_manual_forwards.h
  279. include/seqan/index/index_pizzachili.h
  280. include/seqan/index/index_pizzachili_find.h
  281. include/seqan/index/index_pizzachili_string.h
  282. include/seqan/index/index_qgram.h
  283. include/seqan/index/index_qgram_openaddressing.h
  284. include/seqan/index/index_sa_btree.h
  285. include/seqan/index/index_sa_bwtwalk.h
  286. include/seqan/index/index_sa_lss.h
  287. include/seqan/index/index_sa_mm.h
  288. include/seqan/index/index_sa_qsort.h
  289. include/seqan/index/index_shawarma.h
  290. include/seqan/index/index_shims.h
  291. include/seqan/index/index_skew3.h
  292. include/seqan/index/index_skew7.h
  293. include/seqan/index/index_skew7_multi.h
  294. include/seqan/index/index_wotd.h
  295. include/seqan/index/pipe_merger3.h
  296. include/seqan/index/pipe_merger7.h
  297. include/seqan/index/pizzachili_api.h
  298. include/seqan/index/pump_extender3.h
  299. include/seqan/index/pump_extender7.h
  300. include/seqan/index/pump_lcp_core.h
  301. include/seqan/index/pump_separator7.h
  302. include/seqan/index/radix.h
  303. include/seqan/index/repeat_base.h
  304. include/seqan/index/shape_base.h
  305. include/seqan/index/shape_gapped.h
  306. include/seqan/index/shape_onegapped.h
  307. include/seqan/index/shape_predefined.h
  308. include/seqan/index/shape_threshold.h
  309. include/seqan/map.h
  310. include/seqan/map/map_adapter_stl.h
  311. include/seqan/map/map_base.h
  312. include/seqan/map/map_chooser.h
  313. include/seqan/map/map_generated_forwards.h
  314. include/seqan/map/map_skiplist.h
  315. include/seqan/map/map_vector.h
  316. include/seqan/map/sumlist.h
  317. include/seqan/map/sumlist_mini.h
  318. include/seqan/map/sumlist_skip.h
  319. include/seqan/misc/edit_environment.h
  320. include/seqan/misc/misc_base.h
  321. include/seqan/misc/misc_cmdparser.h
  322. include/seqan/misc/misc_dequeue.h
  323. include/seqan/misc/misc_generated_forwards.h
  324. include/seqan/misc/misc_interval_tree.h
  325. include/seqan/misc/misc_long_word.h
  326. include/seqan/misc/misc_map.h
  327. include/seqan/misc/misc_parsing.h
  328. include/seqan/misc/misc_random.h
  329. include/seqan/misc/misc_set.h
  330. include/seqan/misc/misc_svg.h
  331. include/seqan/misc/priority_type_base.h
  332. include/seqan/misc/priority_type_heap.h
  333. include/seqan/modifier.h
  334. include/seqan/modifier/modifier_alphabet.h
  335. include/seqan/modifier/modifier_alphabet_expansion.h
  336. include/seqan/modifier/modifier_functors.h
  337. include/seqan/modifier/modifier_generated_forwards.h
  338. include/seqan/modifier/modifier_iterator.h
  339. include/seqan/modifier/modifier_reverse.h
  340. include/seqan/modifier/modifier_shortcuts.h
  341. include/seqan/modifier/modifier_string.h
  342. include/seqan/modifier/modifier_view.h
  343. include/seqan/parallel.h
  344. include/seqan/parallel/parallel_atomic_misc.h
  345. include/seqan/parallel/parallel_atomic_primitives.h
  346. include/seqan/parallel/parallel_generated_forwards.h
  347. include/seqan/parallel/parallel_macros.h
  348. include/seqan/pipe.h
  349. include/seqan/pipe/pipe_base.h
  350. include/seqan/pipe/pipe_caster.h
  351. include/seqan/pipe/pipe_counter.h
  352. include/seqan/pipe/pipe_echoer.h
  353. include/seqan/pipe/pipe_edit_environment.h
  354. include/seqan/pipe/pipe_filter.h
  355. include/seqan/pipe/pipe_generated_forwards.h
  356. include/seqan/pipe/pipe_iterator.h
  357. include/seqan/pipe/pipe_joiner.h
  358. include/seqan/pipe/pipe_namer.h
  359. include/seqan/pipe/pipe_sampler.h
  360. include/seqan/pipe/pipe_shifter.h
  361. include/seqan/pipe/pipe_source.h
  362. include/seqan/pipe/pipe_tupler.h
  363. include/seqan/pipe/pool_base.h
  364. include/seqan/pipe/pool_mapper.h
  365. include/seqan/pipe/pool_sorter.h
  366. include/seqan/platform.h
  367. include/seqan/platform/platform_gcc.h
  368. include/seqan/platform/platform_generated_forwards.h
  369. include/seqan/platform/platform_mingw.h
  370. include/seqan/platform/platform_solaris.h
  371. include/seqan/platform/platform_windows.h
  372. include/seqan/random.h
  373. include/seqan/random/ext_MersenneTwister.h
  374. include/seqan/random/random_base.h
  375. include/seqan/random/random_generated_forwards.h
  376. include/seqan/random/random_geometric.h
  377. include/seqan/random/random_lognormal.h
  378. include/seqan/random/random_mt19937.h
  379. include/seqan/random/random_normal.h
  380. include/seqan/random/random_rng_functor.h
  381. include/seqan/random/random_shuffle.h
  382. include/seqan/random/random_uniform.h
  383. include/seqan/refinement.h
  384. include/seqan/refinement/graph_algorithm_refine_align.h
  385. include/seqan/refinement/graph_algorithm_refine_aligngraph.h
  386. include/seqan/refinement/graph_algorithm_refine_annotation.h
  387. include/seqan/refinement/graph_algorithm_refine_exact.h
  388. include/seqan/refinement/graph_algorithm_refine_exact_iterative.h
  389. include/seqan/refinement/graph_algorithm_refine_fragment.h
  390. include/seqan/refinement/graph_algorithm_refine_inexact.h
  391. include/seqan/refinement/graph_algorithm_refine_scoring.h
  392. include/seqan/refinement/graph_impl_align.h
  393. include/seqan/refinement/graph_impl_align_adapt.h
  394. include/seqan/refinement/refinement_generated_forwards.h
  395. include/seqan/score.h
  396. include/seqan/score/score_base.h
  397. include/seqan/score/score_edit.h
  398. include/seqan/score/score_generated_forwards.h
  399. include/seqan/score/score_matrix.h
  400. include/seqan/score/score_matrix_data.h
  401. include/seqan/score/score_simple.h
  402. include/seqan/seeds.h
  403. include/seqan/seeds/banded_align.h
  404. include/seqan/seeds/banded_chain_align.h
  405. include/seqan/seeds/banded_chain_align_affine.h
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  1886. share/doc/seqan/TAG_Omops.html
  1887. share/doc/seqan/TAG_Oops.html
  1888. share/doc/seqan/TAG_Overflow+_Strategy.html
  1889. share/doc/seqan/TAG_Pizza+_26+_Chili+_Index+_Fibres.html
  1890. share/doc/seqan/TAG_Pizza+_26+_Chili+_Index+_Tags.html
  1891. share/doc/seqan/TAG_Postorder.html
  1892. share/doc/seqan/TAG_Postorder_Empty_Edges.html
  1893. share/doc/seqan/TAG_Prefix+_Order.html
  1894. share/doc/seqan/TAG_Preorder.html
  1895. share/doc/seqan/TAG_Preorder_Empty_Edges.html
  1896. share/doc/seqan/TAG_Q_Gram+_Index+_Fibres.html
  1897. share/doc/seqan/TAG_Seed+_Adding.html
  1898. share/doc/seqan/TAG_Seed+_Extension.html
  1899. share/doc/seqan/TAG_Seed_Set.html
  1900. share/doc/seqan/TAG_Segment+_Match+_Generation.html
  1901. share/doc/seqan/TAG_Simple.html
  1902. share/doc/seqan/TAG_Tag_List.html
  1903. share/doc/seqan/TAG_Tcm.html
  1904. share/doc/seqan/TAG_Upgma+_Configurator.html
  1905. share/doc/seqan/TAG_W_O_T_D+_Index+_Fibres.html
  1906. share/doc/seqan/TAG_Zoops.html
  1907. share/doc/seqan/TYPEDEF_Aligned_Read_Store_Element_23_T_Gap_Anchors.html
  1908. share/doc/seqan/TYPEDEF_Aligned_Read_Store_Element_23_T_Pos.html
  1909. share/doc/seqan/TYPEDEF_Aligned_Read_Store_Element_23_T_Spec.html
  1910. share/doc/seqan/TYPEDEF_Contig_Store_Element_23_T_Contig_Seq.html
  1911. share/doc/seqan/TYPEDEF_Contig_Store_Element_23_T_Gap_Anchors.html
  1912. share/doc/seqan/TYPEDEF_Contig_Store_Element_23_T_Pos.html
  1913. share/doc/seqan/TYPEDEF_Contig_Store_Element_23_T_Spec.html
  1914. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Align_Quality_Store.html
  1915. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Store.html
  1916. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Tag_Store.html
  1917. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Annotation_Name_Store.html
  1918. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Annotation_Store.html
  1919. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Contig_File_Store.html
  1920. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Contig_Name_Store.html
  1921. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Contig_Store.html
  1922. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Library_Name_Store.html
  1923. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Library_Store.html
  1924. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Name_Store.html
  1925. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Store.html
  1926. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Read_Name_Store.html
  1927. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Read_Seq_Store.html
  1928. share/doc/seqan/TYPEDEF_Fragment_Store_23_T_Read_Store.html
  1929. share/doc/seqan/alignment.cpp
  1930. share/doc/seqan/alignmentGraph.png
  1931. share/doc/seqan/alignment_local.cpp
  1932. share/doc/seqan/allocator.cpp
  1933. share/doc/seqan/alphabet.cpp
  1934. share/doc/seqan/automatonGraph.png
  1935. share/doc/seqan/blast_report.cpp
  1936. share/doc/seqan/dddoc.js
  1937. share/doc/seqan/dddoc_empty.gif
  1938. share/doc/seqan/dddoc_html.css
  1939. share/doc/seqan/dddoc_minus.gif
  1940. share/doc/seqan/dddoc_plus.gif
  1941. share/doc/seqan/directedGraph.png
  1942. share/doc/seqan/file_format.cpp
  1943. share/doc/seqan/find_approx.cpp
  1944. share/doc/seqan/find_exact.cpp
  1945. share/doc/seqan/find_motif.cpp
  1946. share/doc/seqan/find_wild.cpp
  1947. share/doc/seqan/graph_algo_bfs.cpp
  1948. share/doc/seqan/graph_algo_dfs.cpp
  1949. share/doc/seqan/graph_algo_flow_fordfulkerson.cpp
  1950. share/doc/seqan/graph_algo_his.cpp
  1951. share/doc/seqan/graph_algo_lcs.cpp
  1952. share/doc/seqan/graph_algo_lis.cpp
  1953. share/doc/seqan/graph_algo_path_allpairs.cpp
  1954. share/doc/seqan/graph_algo_path_bellmanford.cpp
  1955. share/doc/seqan/graph_algo_path_dag.cpp
  1956. share/doc/seqan/graph_algo_path_dijkstra.cpp
  1957. share/doc/seqan/graph_algo_path_floydwarshall.cpp
  1958. share/doc/seqan/graph_algo_path_transitive.cpp
  1959. share/doc/seqan/graph_algo_scc.cpp
  1960. share/doc/seqan/graph_algo_topsort.cpp
  1961. share/doc/seqan/graph_algo_tree_kruskal.cpp
  1962. share/doc/seqan/graph_algo_tree_prim.cpp
  1963. share/doc/seqan/graph_hmm.cpp
  1964. share/doc/seqan/graph_hmm_silent.cpp
  1965. share/doc/seqan/index.html
  1966. share/doc/seqan/index_find.cpp
  1967. share/doc/seqan/index_find_stringset.cpp
  1968. share/doc/seqan/index_maxrepeats.cpp
  1969. share/doc/seqan/index_mummy.cpp
  1970. share/doc/seqan/index_mums.cpp
  1971. share/doc/seqan/index_node_predicate.cpp
  1972. share/doc/seqan/index_sufarray.cpp
  1973. share/doc/seqan/index_supermaxrepeats.cpp
  1974. share/doc/seqan/iterator.cpp
  1975. share/doc/seqan/modifier_modreverse.cpp
  1976. share/doc/seqan/modifier_modview.cpp
  1977. share/doc/seqan/modifier_nested.cpp
  1978. share/doc/seqan/pizzachili.cpp
  1979. share/doc/seqan/rooted_iterator.cpp
  1980. share/doc/seqan/searchfile.js
  1981. share/doc/seqan/seqan_logo.gif
  1982. share/doc/seqan/seqan_logo_large.png
  1983. share/doc/seqan/shape_predefined.h
  1984. share/doc/seqan/treeGraph.png
  1985. share/doc/seqan/trieGraph.png
  1986. share/doc/seqan/undirectedGraph.png
  1987. Collapse this list.

To install the port: cd /usr/ports/biology/seqan1/ && make install clean
To add the package: pkg install seqan1

PKGNAME: seqan1

distinfo:

SHA256 (seqan-1.3.1.zip) = 87eebe73ace9ada2f4664a768ae212d4acc5fb3ce87702709c3d15bf2d153aeb
SIZE (seqan-1.3.1.zip) = 8787521

There are no ports dependent upon this port


Configuration Options
===> The following configuration options are available for seqan1-1.3.1_4:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

USES:
zip

Master Sites:
  1. http://ftp.seqan.de/releases/

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 Jul 2016 11:04:14
Original commit files touched by this commit  1.3.1_4
Revision:418767
mat search for other commits by this committer
When there is a do-install target, do not use a post-install target, do
everything at once.  Sometime, rename post-install into a options helper
target.

I did not fix ports that were such a mess that I could not figure out
what they really wanted to do.  I also did not change ports that had
some version of an auto-plist code in post-install, for the same reason.

With hat:	portmgr
Sponsored by:	Absolight
19 May 2016 10:21:25
Original commit files touched by this commit  1.3.1_3
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
10 May 2016 01:05:23
Original commit files touched by this commit  1.3.1_3
Revision:414898
junovitch search for other commits by this committer
biology/seqan: update 1.3.1 -> 2.1.1
biology/seqan1: create port from current SeqAn 1.3.1 for legacy usage
UPDATING: document SeqAn updates and seqan1 port for legacy usage

PR:		204127
Submitted by:	Hannes Hauswedell <h2+fbsdports@fsfe.org>

Number of commits found: 3

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