| Port details |
- seqio Set of C functions which can read/write biological sequence files
- 1.2.2_1 biology
 =0      1.2.2_1Version of this port present on the latest quarterly branch.  DEPRECATED: Upstream last release was in 2000
 This port expired on: 2024-01-17
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2001-08-22 09:07:26
- Last Update: 2024-01-18 18:29:14
- Commit Hash: b4b8e40
- License: not specified in port
- WWW:
- https://www.cs.ucdavis.edu/~gusfield/seqio.html
- Description:
- "The SEQIO package is a set of C functions which can read and write
biological sequence files formatted using various file formats and which
can be used to perform database searches on biological databases."
- from the README file
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- No installation instructions:
- This port has been deleted.
- PKGNAME: seqio
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (seqio.tar.gz) = 0c1f8a55adeb900c749d1412aaa86b85ff3043b2db2dda3b884c101ea5e5d1fb
SIZE (seqio.tar.gz) = 360714
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for seqio-1.2.2_1:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
- Options name:
- biology_seqio
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.2.2_1
18 Jan 2024 18:29:14
 |
Muhammad Moinur Rahman (bofh) |
biology/seqio: Remove expired port
2024-01-17 biology/seqio: Upstream last release was in 2000 |
1.2.2_1
17 Dec 2023 13:11:36
|
Muhammad Moinur Rahman (bofh) |
biology/seqio: Mark DEPRECATED
- Upstream last release was in 2000
- Set EXPIRATION_DATE 2024-01-17
- Pet portclippy |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.2.2_1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.2.2_1
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.2.2_1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.2.2_1
26 Nov 2017 09:00:21
  |
amdmi3 |
- Switch to options helpers |
1.2.2_1
16 Feb 2014 11:42:09
|
ehaupt |
Support staging |
1.2.2_1
20 Sep 2013 15:55:44
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
1.2.2_1
19 Jun 2013 21:04:36
|
bsam |
Remove stale (since r321246) pkg-plist file. |
1.2.2_1
19 Jun 2013 13:30:50
|
bsam |
Forced commit to show previous changes:
-----
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
. use PLIST_FILES, PORTEXAMPLES and PORTDOCS;
. get rid of pkg-plist;
. use plain install commands instead of .for loops;
. remove unnecessary mkdir command (the following one creates a subdirectory);
. mute mkdirs;
. trim Makefile headers;
. remove the indefinite article from COMMENT.
----- |
1.2.2_1
19 Jun 2013 13:09:19
|
bsam |
Index: Makefile
===================================================================
--- Makefile (revision 321238)
+++ Makefile (working copy)
@@ -1,9 +1,5 @@
-# New ports collection makefile for: seqio
-# Date created: 17 August 2001
-# Whom: Tony Maher
-#
+# Created by: Tony Maher
# $FreeBSD$
-#
PORTNAME= seqio
PORTVERSION= 1.2.2 (Only the first 15 lines of the commit message are shown above ) |
1.2.2_1
19 Mar 2011 12:38:54
|
miwi |
- Get Rid MD5 support |
1.2.2_1
21 Dec 2009 02:19:12
|
dougb |
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports. |
1.2.2_1
12 Jul 2008 06:28:25
|
itetcu |
- respect NOPORTEXAMPLES/NOPORTDOCS and fix plist
- bump PORTREVISION
Prompted by: QA Tindy run |
1.2.2
26 Dec 2006 12:46:34
|
linimon |
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.
Hat: portmgr |
1.2.2
22 Jan 2006 08:20:34
|
edwin |
SHA256ify
Approved by: krion@ |
1.2.2
09 Jan 2006 03:25:03
|
edwin |
Fix maintainer address
From: Tony Maher <anthony.maher@uts.edu.au>
To: Edwin Groothuis <edwin@FreeBSD.org>
Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate
Actually I need modify all my ports to use OptusNet rather than
Biolateral. Is there an easy way to do this or should I submit a
separate 1-line patch and PR for each port?
biology/crimap
biology/dna-qc
biology/flip
biology/primer3
biology/seqio
biology/wise
math/xgobi
net/generic-nqs
Submitted by: Tony Maher <anthony.maher@uts.edu.au> |
1.2.2
31 Mar 2004 03:12:58
|
trevor |
SIZEify (maintainer timeout) |
1.2.2
22 Oct 2003 23:44:05
|
kris |
Respect CC and CFLAGS |
1.2.2
22 Oct 2003 09:29:55
|
osa |
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.
Submitted by: Oleg Karachevtsev <ok@etrust.ru>
A part of PR: 57992 |
1.2.2
21 Feb 2003 11:01:38
|
knu |
De-pkg-comment. |
21 Oct 2001 08:51:32
|
knu |
Remove a redundant trailing space. |
22 Aug 2001 13:07:26
|
wjv |
Add seqio 1.2.2, a set of C functions which can read/write biological sequence
files. |
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