| Port details on branch 2023Q1 |
- seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- 2.3.1_4 biology
 =0      2.3.1_4Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2023-02-17 10:51:08
- Last Update: 2023-03-09 19:50:37
- Commit Hash: 636f0a9
- License: MIT
- WWW:
- https://bioinf.shenwei.me/seqkit/
- Description:
- FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and
protein sequences. Common manipulations of FASTA/Q file include converting,
searching, filtering, deduplication, splitting, shuffling, and sampling.
Existing tools only implement some of these manipulations, and not particularly
efficiently, and some are only available for certain operating systems.
Furthermore, the complicated installation process of required packages and
running environments can render these programs less user friendly.
SeqKit is a cross-platform ultrafast comprehensive toolkit for FASTA/Q
processing. SeqKit provides executable binary files for all major operating
systems, including Windows, Linux, and Mac OS X, and can be directly used
without any dependencies or pre-configurations. SeqKit demonstrates competitive
performance in execution time and memory usage compared to similar tools. The
efficiency and usability of SeqKit enable researchers to rapidly accomplish
common FASTA/Q file manipulations.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/seqkit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/seqkit
- pkg install seqkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: seqkit
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1664069346
SHA256 (go/biology_seqkit/seqkit-v2.3.1/v2.3.1.mod) = fdf7d84119bb0ea9f03f3b68cb63dfc055e9d4187609e0eb2554bbd8b39600f0
SIZE (go/biology_seqkit/seqkit-v2.3.1/v2.3.1.mod) = 2322
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- go119 : lang/go119
- Fetch dependencies:
-
- go119 : lang/go119
- ca_root_nss>0 : security/ca_root_nss
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_seqkit
- USES:
- go:modules zip
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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