notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
non port: biology/tophat/Makefile
SVNWeb

Number of commits found XX: 3

Sun, 8 Mar 2020
[ 17:01 antoine ] Original commit   Revision:528058
528058 audio/abraca/Makefile
528058 audio/ardour5/Makefile
528058 audio/cplay/Makefile
528058 audio/cpp-xmms2/Makefile
528058 audio/exaile/Makefile
528058 audio/p5-xmms2/Makefile
528058 benchmarks/glmark2/Makefile
528058 biology/haplohseq/Makefile
528058 biology/tophat/Makefile
528058 cad/lepton-eda/Makefile

(Only the first 10 of 187 ports in this commit are shown above. View all ports for this commit)
Deprecate some ports using deprecated version of python

With hat:	portmgr
Wed, 11 Dec 2019
[ 17:53 jbeich ] Original commit   Revision:519824
519824 archivers/innoextract/Makefile
519824 archivers/tardy/Makefile
519824 astro/libkgeomap/Makefile
519824 astro/libosmium/Makefile
519824 audio/ardour/Makefile
519824 audio/ardour5/Makefile
519824 audio/clementine-player/Makefile
519824 audio/cpp-xmms2/Makefile
519824 audio/csound/Makefile
519824 audio/faust-lv2/Makefile

(Only the first 10 of 417 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Fri, 27 Sep 2019
[ 00:49 jwb ] Original commit   Revision:512997
512997 biology/Makefile
512997 biology/tophat
512997 biology/tophat/Makefile
512997 biology/tophat/distinfo
512997 biology/tophat/files
512997 biology/tophat/files/patch-configure
512997 biology/tophat/files/patch-src-samtools-0.1.18-Makefile
512997 biology/tophat/files/patch-src_Makefile.in
512997 biology/tophat/files/tophat-test
512997 biology/tophat/pkg-descr

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
biology/tophat: Fast splice junction mapper for RNA-Seq reads

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq
reads to mammalian-sized genomes using the ultra high-throughput short read
aligner Bowtie, and then analyzes the mapping results to identify splice
junctions between exons.

Note:

TopHat has been Superseded by HISAT2 and is no longer maintained upstream.
This port is provided mainly for revisiting old studies where TopHat was used.

Number of commits found XX: 3

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
moinmoinJan 18
ghostscript9-agpl-baseJan 17
gitlab-ceJan 14
nodeJan 14
node10Jan 14
node12Jan 14
node14Jan 14
wavpackJan 14
jenkinsJan 13
jenkins-ltsJan 13
phpmyfaqJan 12
sudoJan 11
py-cairosvgJan 10
gitlab-ceJan 09
chromiumJan 07

12 vulnerabilities affecting 102 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2021-01-18 08:22:15


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 42097
Broken 85
Deprecated 195
Ignore 319
Forbidden 4
Restricted 139
No CDROM 71
Vulnerable 18
Expired 39
Set to expire 170
Interactive 0
new 24 hours 12
new 48 hours12
new 7 days40
new fortnight113
new month313

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2021 Dan Langille. All rights reserved.