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Port details
treekin Efficient computation of RNA folding dynamics
0.5.1_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.1_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-06-15 20:37:22
Last Update: 2021-06-13 17:48:12
Commit Hash: c2488a6
License: LatticeLib
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/treekin
  2. man/man1/treekin.1.gz
  3. /usr/local/share/licenses/treekin-0.5.1_3/catalog.mk
  4. /usr/local/share/licenses/treekin-0.5.1_3/LICENSE
  5. /usr/local/share/licenses/treekin-0.5.1_3/LatticeLib
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Dependency lines:
  • treekin>0:biology/treekin
To install the port: cd /usr/ports/biology/treekin/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/treekin
  • pkg install treekin
PKGNAME: treekin
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
treekin
ABIlatestquarterly
FreeBSD:11:aarch64-0.5.1_2
FreeBSD:11:amd64--
FreeBSD:11:armv6-0.5.1_2
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6-0.5.1_2
FreeBSD:12:armv7-0.5.1_2
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-0.5.1_2
FreeBSD:13:aarch640.5.1_2-
FreeBSD:13:amd64--
FreeBSD:13:armv60.5.1_2-
FreeBSD:13:armv70.5.1_20.5.1_2
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc640.5.1_2-
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv70.5.1_2-
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc640.5.1_2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. lapacke>0 : math/lapacke
  2. gfortran10 : lang/gcc10
  3. gmake>=4.3 : devel/gmake
  4. as : devel/binutils
Runtime dependencies:
  1. gfortran10 : lang/gcc10
Library dependencies:
  1. libblas.so : math/blas
  2. liblapack.so : math/lapack
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://www.tbi.univie.ac.at/RNA/packages/source/
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Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Jun 2021 17:48:12
 files touched by this commit commit hash:c2488a6020830af2cf09699b887adec7af806bf3  0.5.1_3
thierry search for other commits by this committer
math/lapack: +math/blas et al., upgrade to 3.9.1

- Upgrade math/blas, math/cblas, math/lapack, math/lapacke and math/xlapack
  to 3.9.1;
  Latest release notes at <http://www.netlib.org/lapack/lapack-3.9.1.html>

- Chase this upgrade in biology/treekin;

- Add a test target;

- Remove a conflict with math/openblas (PR 244296);

- Fix the build with Gcc10 (PR 247485).

PR:		247542
Approved by:	expr-run by antoine@
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.5.1_2
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.5.1_2
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
30 Jan 2020 14:17:44
Original commit files touched by this commit Revision:524642  0.5.1_2
swills search for other commits by this committer
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  0.5.1_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
19 Jul 2019 08:49:33
Original commit files touched by this commit Revision:506914  0.5.1
pkubaj search for other commits by this committer
biology/treekin: fix build on GCC architectures

Needs C++11 compiler:
configure: error: *** A compiler with support for C++11 language features is
required.

Approved by:	mentors (implicit approval)
15 Jun 2019 20:37:06
Original commit files touched by this commit Revision:504268  0.5.1
yuri search for other commits by this committer
New port: biology/treekin: Efficient computation of RNA folding dynamics

Number of commits found: 7