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Port details
treekin Efficient computation of RNA folding dynamics
0.5.1_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 0.5.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-06-15 20:37:22
Last Update: 2020-01-30 14:17:44
SVN Revision: 524642
License: LatticeLib
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
  1. bin/treekin
  2. man/man1/treekin.1.gz
  3. /usr/local/share/licenses/treekin-0.5.1_2/catalog.mk
  4. /usr/local/share/licenses/treekin-0.5.1_2/LICENSE
  5. /usr/local/share/licenses/treekin-0.5.1_2/LatticeLib
Collapse this list.
Dependency lines:
  • treekin>0:biology/treekin
To install the port: cd /usr/ports/biology/treekin/ && make install clean
To add the package: pkg install treekin
PKGNAME: treekin
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. lapacke>0 : math/lapacke
  2. gfortran9 : lang/gcc9
  3. gmake : devel/gmake
  4. as : devel/binutils
Runtime dependencies:
  1. gfortran9 : lang/gcc9
Library dependencies:
  1. libblas.so : math/blas
  2. liblapack.so : math/lapack
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://www.tbi.univie.ac.at/RNA/packages/source/

Number of commits found: 4

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Jan 2020 14:17:44
Original commit files touched by this commit  0.5.1_2
Revision:524642
swills search for other commits by this committer
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
26 Jul 2019 20:46:57
Original commit files touched by this commit  0.5.1_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
19 Jul 2019 08:49:33
Original commit files touched by this commit  0.5.1
Revision:506914
pkubaj search for other commits by this committer
biology/treekin: fix build on GCC architectures

Needs C++11 compiler:
configure: error: *** A compiler with support for C++11 language features is
required.

Approved by:	mentors (implicit approval)
15 Jun 2019 20:37:06
Original commit files touched by this commit  0.5.1
Revision:504268
yuri search for other commits by this committer
New port: biology/treekin: Efficient computation of RNA folding dynamics

Number of commits found: 4

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