notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Ukraine
Some details on the 2023-01-16 website outage.
We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
treepuzzle Maximum likelihood phylogeny reconstruction using quartets
5.2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jan.lentfer@web.de search for ports maintained by this maintainer
Port Added: 2002-11-20 09:04:07
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: not specified in port
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (1 items)
Collapse this list.
  1. bin/puzzle
Collapse this list.
Dependency lines:
  • treepuzzle>0:biology/treepuzzle
To install the port:
cd /usr/ports/biology/treepuzzle/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/treepuzzle
  • pkg install treepuzzle
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: treepuzzle
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
treepuzzle
ABIlatestquarterly
FreeBSD:11:aarch645.25.2
FreeBSD:11:amd645.25.2
FreeBSD:11:armv65.25.2
FreeBSD:11:i3865.25.2
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips645.25.2
FreeBSD:12:aarch645.25.2
FreeBSD:12:amd645.25.2
FreeBSD:12:armv65.25.2
FreeBSD:12:armv75.25.2
FreeBSD:12:i3865.25.2
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips645.25.2
FreeBSD:12:powerpc64pkg-fallout5.2
FreeBSD:13:aarch645.25.2
FreeBSD:13:amd645.25.2
FreeBSD:13:armv65.25.2
FreeBSD:13:armv75.25.2
FreeBSD:13:i3865.25.2
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips645.25.2
FreeBSD:13:powerpc645.25.2
FreeBSD:13:riscv64pkg-fallout5.2
FreeBSD:14:aarch645.2pkg-fallout
FreeBSD:14:amd645.2pkg-fallout
FreeBSD:14:armv65.2pkg-fallout
FreeBSD:14:armv75.2pkg-fallout
FreeBSD:14:i3865.2pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips645.2pkg-fallout
FreeBSD:14:powerpc645.2pkg-fallout
FreeBSD:14:riscv645.2pkg-fallout
 
This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://www.tree-puzzle.de/
Collapse this list.

Number of commits found: 16

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
5.2
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
5.2
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
5.2
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
5.2
25 Sep 2013 00:54:09
Revision:328226Original commit files touched by this commit
bdrewery search for other commits by this committer
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
5.2
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
5.2
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
5.2
21 Aug 2008 06:18:49
Original commit files touched by this commit
rafan search for other commits by this committer
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
(Only the first 15 lines of the commit message are shown above View all of this commit message)
5.2
22 Jan 2006 08:20:34
Original commit files touched by this commit
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
5.2
12 Apr 2005 03:26:57
Original commit files touched by this commit
obrien search for other commits by this committer
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
5.2
11 Apr 2005 08:04:41
Original commit files touched by this commit
obrien search for other commits by this committer
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
5.2
30 Jul 2004 22:02:00
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 5.2

PR:             ports/69799
Submitted by:   Jan Lentfer <Jan.Lentfer@web.de> (maintainer)
5.1
31 Mar 2004 03:12:58
Original commit files touched by this commit
trevor search for other commits by this committer
SIZEify (maintainer timeout)
5.1
06 Feb 2004 13:12:53
Original commit files touched by this commit
trevor search for other commits by this committer
Use PLIST_FILES (bento-tested, marcus-reviewed).
5.1
21 Feb 2003 11:01:38
Original commit files touched by this commit
knu search for other commits by this committer
De-pkg-comment.
5.1
20 Nov 2002 08:54:11
Original commit files touched by this commit
ijliao search for other commits by this committer
add treepuzzle 5.1
Maximum likelihood phylogeny reconstruction using quartets

PR:             45241
Submitted by:   Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de>

Number of commits found: 16