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Port details
R-cran-msm Multi-State Markov and Hidden Markov Models in Continuous Time
1.7.1 devel on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.1Version of this port present on the latest quarterly branch.
Maintainer: thierry@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-05-04 20:33:04
Last Update: 2023-11-24 18:52:17
Commit Hash: 27133cd
People watching this port, also watch:: SparseBitSet, py39-cysignals, R-cran-eRm, python
License: GPLv2+
WWW:
https://cran.r-project.org/package=msm
Description:
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. Designed for processes observed at arbitrary times in continuous time (panel data) but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time. See also: https://github.com/chjackson/msm
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (47 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-msm-1.7.1/catalog.mk
  2. /usr/local/share/licenses/R-cran-msm-1.7.1/LICENSE
  3. /usr/local/share/licenses/R-cran-msm-1.7.1/GPLv2+
  4. lib/R/library/msm/CITATION
  5. lib/R/library/msm/DESCRIPTION
  6. lib/R/library/msm/INDEX
  7. lib/R/library/msm/Meta/Rd.rds
  8. lib/R/library/msm/Meta/data.rds
  9. lib/R/library/msm/Meta/features.rds
  10. lib/R/library/msm/Meta/hsearch.rds
  11. lib/R/library/msm/Meta/links.rds
  12. lib/R/library/msm/Meta/nsInfo.rds
  13. lib/R/library/msm/Meta/package.rds
  14. lib/R/library/msm/Meta/vignette.rds
  15. lib/R/library/msm/NAMESPACE
  16. lib/R/library/msm/NEWS
  17. lib/R/library/msm/R/msm
  18. lib/R/library/msm/R/msm.rdb
  19. lib/R/library/msm/R/msm.rdx
  20. lib/R/library/msm/data/Rdata.rdb
  21. lib/R/library/msm/data/Rdata.rds
  22. lib/R/library/msm/data/Rdata.rdx
  23. lib/R/library/msm/doc/index.html
  24. lib/R/library/msm/doc/msm-manual.R
  25. lib/R/library/msm/doc/msm-manual.pdf
  26. lib/R/library/msm/help/AnIndex
  27. lib/R/library/msm/help/aliases.rds
  28. lib/R/library/msm/help/msm.rdb
  29. lib/R/library/msm/help/msm.rdx
  30. lib/R/library/msm/help/paths.rds
  31. lib/R/library/msm/html/00Index.html
  32. lib/R/library/msm/html/R.css
  33. lib/R/library/msm/libs/msm.so
  34. lib/R/library/msm/tests/test_base.R
  35. lib/R/library/msm/tests/testthat/helper.r
  36. lib/R/library/msm/tests/testthat/test_analyticp.r
  37. lib/R/library/msm/tests/testthat/test_datasumm.r
  38. lib/R/library/msm/tests/testthat/test_deriv.r
  39. lib/R/library/msm/tests/testthat/test_models.r
  40. lib/R/library/msm/tests/testthat/test_models_hmm.r
  41. lib/R/library/msm/tests/testthat/test_models_hmmmulti.r
  42. lib/R/library/msm/tests/testthat/test_models_misc.r
  43. lib/R/library/msm/tests/testthat/test_utils.r
  44. lib/R/library/msm/tests/testthat/test_viterbi.R
  45. @owner
  46. @group
  47. @mode
Collapse this list.
Dependency lines:
  • R-cran-msm>0:devel/R-cran-msm
To install the port:
cd /usr/ports/devel/R-cran-msm/ && make install clean
To add the package, run one of these commands:
  • pkg install devel/R-cran-msm
  • pkg install R-cran-msm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-msm
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1700851031 SHA256 (msm_1.7.1.tar.gz) = d134782b966eed33742819595119ab1a61bec4416cc3fa7630a0f34c4e7f785b SIZE (msm_1.7.1.tar.gz) = 939804

Packages (timestamps in pop-ups are UTC):
R-cran-msm
ABIlatestquarterly
FreeBSD:13:aarch641.7.11.7.1
FreeBSD:13:amd641.7.11.7.1
FreeBSD:13:armv6--
FreeBSD:13:armv71.7.11.7.1
FreeBSD:13:i3861.7.11.7.1
FreeBSD:13:powerpc--
FreeBSD:13:powerpc64-1.7.1
FreeBSD:13:powerpc64le-1.7.1
FreeBSD:14:aarch641.7.11.7.1
FreeBSD:14:amd641.7.11.7.1
FreeBSD:14:armv6--
FreeBSD:14:armv71.7.11.7.1
FreeBSD:14:i3861.7.11.7.1
FreeBSD:14:powerpc--
FreeBSD:14:powerpc64-1.7.1
FreeBSD:14:powerpc64le-1.7.1
FreeBSD:15:aarch641.7.1-
FreeBSD:15:amd641.7.1-
FreeBSD:15:armv71.7.1-
FreeBSD:15:powerpc--
FreeBSD:15:powerpc641.7.1-
FreeBSD:15:powerpc64le1.7.1-
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R : math/R
  2. gfortran12 : lang/gcc12
  3. as : devel/binutils
Runtime dependencies:
  1. R-cran-expm>0 : math/R-cran-expm
  2. R-cran-mvtnorm>0 : math/R-cran-mvtnorm
  3. R : math/R
  4. gfortran12 : lang/gcc12
This port is required by:
for Run
  1. math/R-cran-ltm

Configuration Options:
No options to configure
Options name:
devel_R-cran-msm
USES:
cran:compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (18 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/msm/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/msm/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/msm/
  7. https://cran.csiro.au/src/contrib/
  8. https://cran.csiro.au/src/contrib/Archive/msm/
  9. https://cran.ism.ac.jp/src/contrib/
  10. https://cran.ism.ac.jp/src/contrib/Archive/msm/
  11. https://cran.ma.imperial.ac.uk/src/contrib/
  12. https://cran.ma.imperial.ac.uk/src/contrib/Archive/msm/
  13. https://mirror.las.iastate.edu/CRAN/src/contrib/
  14. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/msm/
  15. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  16. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/msm/
  17. https://stat.ethz.ch/CRAN/src/contrib/
  18. https://stat.ethz.ch/CRAN/src/contrib/Archive/msm/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.7.1
24 Nov 2023 18:52:17
commit hash: 27133cdac52bd94e58af47c36a29d62357f0a254commit hash: 27133cdac52bd94e58af47c36a29d62357f0a254commit hash: 27133cdac52bd94e58af47c36a29d62357f0a254commit hash: 27133cdac52bd94e58af47c36a29d62357f0a254 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
devel/R-cran-msm: upgrade to 1.7.1

Release notes at <https://github.com/chjackson/msm/releases/tag/v1.7.1>.
1.7_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.7
29 Nov 2022 21:10:38
commit hash: bccdc0f61ecf352323a39ee974ab5531f427d74acommit hash: bccdc0f61ecf352323a39ee974ab5531f427d74acommit hash: bccdc0f61ecf352323a39ee974ab5531f427d74acommit hash: bccdc0f61ecf352323a39ee974ab5531f427d74a files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
devel/R-cran-msm: upgrade to 1.7

Release notes at <https://cran.r-project.org/web/packages/msm/NEWS>.
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.6.9
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.6.9
20 Jul 2022 14:21:35
commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
devel: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  "Waitman Gobble" <uzimac@da3m0n8t3r.com>
  *  <jkoshy@FreeBSD.org>
  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Aaron H. K. Diep <ahkdiep@gmail.com>
  *  Aaron Hurt <ahurt@anbcs.com>
  *  Abel Chow <abel_chow@yahoo.com>
  *  Adam McLaurin
  *  Adam Saponara <as@php.net>
  *  Adam Weinberger <adamw@FreeBSD.org>
  *  Ade Lovett <ade@FreeBSD.org>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.6.9
04 May 2022 20:32:14
commit hash: 31c941c09e26577b5dd107009766d7951ca10fd6commit hash: 31c941c09e26577b5dd107009766d7951ca10fd6commit hash: 31c941c09e26577b5dd107009766d7951ca10fd6commit hash: 31c941c09e26577b5dd107009766d7951ca10fd6 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in
Continuous Time

Number of commits found: 7