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Port details
p5-Algorithm-Cluster Perl interface to C clustering library
1.59 devel on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.59Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2004-05-21 08:32:45
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: ART10 GPLv1+
WWW:
https://metacpan.org/release/Algorithm-Cluster
Description:
This module is an interface to the C Clustering Library, a general purpose library implementing functions for hierarchical clustering (pairwise simple, complete, average, and centroid linkage), along with k-means and k-medians clustering, and 2D self-organizing maps. The library is distributed along with Cluster 3.0, an enhanced version of the famous Cluster program originally written by Michael Eisen while at Stanford University. The C clustering library was written by Michiel de Hoon. This module is a Perl wrapper for the C clustering library for cDNA microarray data, Copyright (C) 2002 Michiel Jan Laurens de Hoon.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (11 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-Algorithm-Cluster-1.59/catalog.mk
  2. /usr/local/share/licenses/p5-Algorithm-Cluster-1.59/LICENSE
  3. /usr/local/share/licenses/p5-Algorithm-Cluster-1.59/ART10
  4. /usr/local/share/licenses/p5-Algorithm-Cluster-1.59/GPLv1+
  5. lib/perl5/site_perl/mach/5.32/Algorithm/Cluster.pm
  6. lib/perl5/site_perl/mach/5.32/Algorithm/Cluster/Record.pm
  7. lib/perl5/site_perl/mach/5.32/auto/Algorithm/Cluster/Cluster.so
  8. lib/perl5/site_perl/man/man3/Algorithm::Cluster.3.gz
  9. @owner
  10. @group
  11. @mode
Collapse this list.
Dependency lines:
  • p5-Algorithm-Cluster>0:devel/p5-Algorithm-Cluster
To install the port:
cd /usr/ports/devel/p5-Algorithm-Cluster/ && make install clean
To add the package, run one of these commands:
  • pkg install devel/p5-Algorithm-Cluster
  • pkg install p5-Algorithm-Cluster
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Algorithm-Cluster
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1567292082 SHA256 (Algorithm-Cluster-1.59.tar.gz) = cb53da17f502aa8d9285e151111d7c59f989078241f687b59ef3db0dd71dfcdf SIZE (Algorithm-Cluster-1.59.tar.gz) = 461420

Packages (timestamps in pop-ups are UTC):
p5-Algorithm-Cluster
ABIlatestquarterly
FreeBSD:13:aarch641.591.59
FreeBSD:13:amd641.591.59
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.591.59
FreeBSD:13:powerpc--
FreeBSD:13:powerpc641.591.59
FreeBSD:13:powerpc64le-1.59
FreeBSD:14:aarch641.591.59
FreeBSD:14:amd641.591.59
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.591.59
FreeBSD:14:powerpc--
FreeBSD:14:powerpc64-1.59
FreeBSD:14:powerpc64le1.591.59
FreeBSD:15:aarch641.59-
FreeBSD:15:amd641.59-
FreeBSD:15:armv7--
FreeBSD:15:powerpc--
FreeBSD:15:powerpc641.59-
FreeBSD:15:powerpc64le1.59-
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
devel_p5-Algorithm-Cluster
USES:
perl5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (13 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/M/MD/MDEHOON/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/M/MD/MDEHOON/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Algorithm/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/M/MD/MDEHOON/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/M/MD/MDEHOON/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/M/MD/MDEHOON/
  7. http://backpan.perl.org/authors/id/M/MD/MDEHOON/
  8. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/M/MD/MDEHOON/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/M/MD/MDEHOON/
  10. https://cpan.metacpan.org/authors/id/M/MD/MDEHOON/
  11. https://cpan.metacpan.org/modules/by-module/Algorithm/
  12. https://www.cpan.org/authors/id/M/MD/MDEHOON/
Collapse this list.

Number of commits found: 54

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.59
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.59
20 Jul 2022 14:21:35
commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746commit hash: aa6eefd5e663357e8223399bc38c7987f5e35746 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
devel: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  "Waitman Gobble" <uzimac@da3m0n8t3r.com>
  *  <jkoshy@FreeBSD.org>
  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Aaron H. K. Diep <ahkdiep@gmail.com>
  *  Aaron Hurt <ahurt@anbcs.com>
  *  Abel Chow <abel_chow@yahoo.com>
  *  Adam McLaurin
  *  Adam Saponara <as@php.net>
  *  Adam Weinberger <adamw@FreeBSD.org>
  *  Ade Lovett <ade@FreeBSD.org>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.59
15 Jun 2021 08:41:00
commit hash: 2745cae4c6be47ff2077e2f165de23309951c98fcommit hash: 2745cae4c6be47ff2077e2f165de23309951c98fcommit hash: 2745cae4c6be47ff2077e2f165de23309951c98fcommit hash: 2745cae4c6be47ff2077e2f165de23309951c98f files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
devel/p5-Algorithm-Cluster: same issue on powerpc as on i386
1.59
09 Jun 2021 00:31:08
commit hash: 233e8c358443cf32cb95ed9e68945529ad5b9e27commit hash: 233e8c358443cf32cb95ed9e68945529ad5b9e27commit hash: 233e8c358443cf32cb95ed9e68945529ad5b9e27commit hash: 233e8c358443cf32cb95ed9e68945529ad5b9e27 files touched by this commit
Piotr Kubaj (pkubaj) search for other commits by this committer
devel/p5-Algorithm-Cluster: fix build on i386

It's enough to simply use ld.bfd for linking, but ports framework forces ports
with USE_PERL5=configure to use ${CC} as LD.
1.59
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.59
14 Sep 2019 19:18:02
Revision:512049Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN on i386 with lld

MFH:		2019Q3
1.59
31 Aug 2019 23:29:49
Revision:510668Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.59
1.58
27 Apr 2019 18:27:13
Revision:500247Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.58
1.57
18 Apr 2019 14:44:47
Revision:499269Original commit files touched by this commit
mat search for other commits by this committer
Add a few BROKEN on 13/i386.

Reported by:	pkg-fallout
1.57
24 Nov 2018 22:30:40
Revision:485818Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.57

- Add LICENSE

Changes:	https://metacpan.org/pod/Algorithm::Cluster#CHANGES
1.56
27 May 2018 20:15:20
Revision:470993Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
1.56
30 Apr 2018 17:08:57
Revision:468722Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.56
1.53
22 Aug 2017 16:40:28
Revision:448552Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.53

- Strip shared library
1.52_1
19 May 2016 10:21:25
Revision:415498Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
1.52_1
12 Mar 2015 23:00:03
Revision:381151Original commit files touched by this commit
adamw search for other commits by this committer
Some OCD cleanups on some of the perl@ ports.

- Remove dependencies in core
- Put testing depends in TEST_DEPENDS
- Remove unnecessary bsd.port.options.mk inclusions
- Remove checks for Perl versions that no longer exist in the ports tree
- Sort plists, some of which were so jumbled that I have to assume
  the plist was randomized before committing

A lot of the plist changes in this commit are moving PERL5_MAN3 after
SITE_PERL. It's repo churn now, but it makes updating the ports later
far easier.
1.52_1
26 Nov 2014 13:08:38
Revision:373448Original commit files touched by this commit
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.52
27 Oct 2014 10:55:59
Revision:371547Original commit files touched by this commit
bapt search for other commits by this committer
Cleanup plist
1.52
10 Jun 2014 12:14:14
Revision:357300Original commit files touched by this commit
mat search for other commits by this committer
Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
1.52
27 Oct 2013 12:17:59
Revision:331766Original commit files touched by this commit
vanilla search for other commits by this committer
support STAGEDIR.
1.52
20 Sep 2013 17:13:47
Revision:327724Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 3)
1.52
29 Aug 2013 17:16:53
Revision:325610Original commit files touched by this commit
sunpoet search for other commits by this committer
- Add WWW
- Use single space after WWW:
- Remove Author line
1.52
05 Aug 2013 12:14:08
Revision:324272Original commit files touched by this commit
culot search for other commits by this committer
- Update to 1.52

Changes:	http://search.cpan.org/dist/Algorithm-Cluster/perl/Cluster.pm#CHANGES
1.50
02 Aug 2013 18:52:11
Revision:324174Original commit files touched by this commit
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
1.50
29 Mar 2013 00:44:54
Revision:315509Original commit files touched by this commit
eadler search for other commits by this committer
For perl@ owned ports:

- Fix COMMENT
- Trim header
1.50
20 Jun 2011 08:36:20
Original commit files touched by this commit
az search for other commits by this committer
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
  See http://wiki.freebsd.org/Perl for details.
- Change maintainership from ports@ to perl@ for ports in this changeset.
- Remove MD5 checksum
1.50
29 Dec 2010 07:05:30
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.50
1.49
07 Dec 2010 19:35:25
Original commit files touched by this commit
linimon search for other commits by this committer
With portmgr hat, reassign some ports from clsung to perl, since clsung
is apparently having some trouble with email.
1.49
23 Aug 2010 03:57:40
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Update to 1.49

Changes:        http://search.cpan.org/dist/Algorithm-Cluster/Changes
PR:             ports/147608
Submitted by:   pgollucci (myself)
Approved by:    maintainer timeout (clsung; > 2.5 months)
1.47
11 Dec 2009 08:35:38
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.47
1.46
18 Jun 2009 08:07:18
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.46
1.45
31 May 2009 14:47:47
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.45

PR:             ports/134797
Submitted by:   pgollucci
1.44
24 Apr 2009 06:53:23
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.44

PR:             ports/133597
Submitted by:   leeym
1.42
27 Sep 2008 10:28:40
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.42
1.41
04 Sep 2008 14:55:59
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.41
1.40
28 Aug 2008 00:25:47
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.40
1.38
01 Apr 2008 11:28:22
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.38
1.37
05 Jan 2008 06:35:37
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.37

Changes:
1.36
02 Jul 2007 08:12:18
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.36
1.35
05 Mar 2007 02:58:52
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.35
1.33
27 Sep 2006 01:31:40
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.33

PR:             ports/103689
Submitted by:   Gea-Suan Lin <gslin_AT_gslin dot org>
1.32
17 Sep 2006 18:37:15
Original commit files touched by this commit
kris search for other commits by this committer
Now builds on amd64
1.32
25 Jun 2006 15:04:18
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.32

PR:             ports/99332
Submitted by:   aaron
1.31
16 Mar 2006 02:34:04
Original commit files touched by this commit
clsung search for other commits by this committer
- update to 1.31
- try to satisfy portlint
1.30
22 Jan 2006 08:30:12
Original commit files touched by this commit
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
1.30
22 Jan 2006 01:48:34
Original commit files touched by this commit
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
1.30
01 Nov 2005 08:18:18
Original commit files touched by this commit
clsung search for other commits by this committer
- update to 1.30
1.29
21 Sep 2005 19:31:43
Original commit files touched by this commit
fenner search for other commits by this committer
search.cpan.org redirect reduction canonicalization project, pass 1:
URLs automatically rewritten from /search?dist=Foo or /dist/Foo
to /dist/Foo/ (note trailing slash).  After a 2002(!) reorganization,
this is the preferred way to refer to modules on search.cpan.org.

This pass brought to you by http://people.freebsd.org/~fenner/fix-search
1.29
05 May 2005 11:53:55
Original commit files touched by this commit
clsung search for other commits by this committer
- update to 1.29
1.28
25 Feb 2005 02:54:46
Original commit files touched by this commit
clsung search for other commits by this committer
- update to 1.28
1.27
20 Aug 2004 02:56:44
Original commit files touched by this commit
clsung search for other commits by this committer
My territory, suggested by ijliao. :p

Approved by:    vanilla (co-mentor)
1.27
23 Jun 2004 12:26:44
Original commit files touched by this commit
krion search for other commits by this committer
Update to 1.27

PR:             ports/68228
Submitted by:   maintainer
1.26
30 May 2004 06:59:17
Original commit files touched by this commit
kris search for other commits by this committer
BROKEN on amd64: Does not build (needs to build shared libraries with -fPIC)
1.26
21 May 2004 08:32:14
Original commit files touched by this commit
krion search for other commits by this committer
Add p5-Algorithm-Cluster 1.26,

This module is an interface to the C Clustering Library, a
general purpose library implementing functions for hierarchical
clustering (pairwise simple, complete, average, and centroid
linkage), along with k-means and k-medians clustering, and 2D
self-organizing maps. The library is distributed along with
Cluster 3.0, an enhanced version of the famous Cluster program
originally written by Michael Eisen while at Stanford
University. The C clustering library was written by Michiel de
Hoon.

PR:             ports/66970
Submitted by:   Cheng-Lung Sung <clsung@dragon2.net>

Number of commits found: 54