math/R-cran-spdep: Update to 1.3-6

Reported by:	portscout

math/R-cran-spdep: Update to 1.3-5

Reported by:	portscout

math/R-cran-spdep: Update to 1.3-4

Reported by:	portscout

math/R-cran-spdep: Update to 1.3-3

Reported by:	portscout

math/R-cran-spdep: Update to 1.3-1

Reported by:	portscout

math/R-cran-spdep: Update to 1.2-8

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math/R-cran-spdep: Update to 1.2-5

*/*: bump all consumers after recent boost upgrade

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/R-cran-spdep: Update to 1.2-4

math/R-cran-spdep: Update to 1.2-3

math/R-cran-spdep: Update to 1.2-2

math/R-cran-spdep: Update to 1.2-1

math/R-cran-spdep: Update to 1.1-13

math/R-cran-spdep: Update to 1.1-12

math/R-cran-spdep: Update to 1.1-11

math/R-cran-spdep: Update to 1.1-8

math/R-cran-spdep: Update to 1.1-7

Remove # $FreeBSD$ from Makefiles.

- Update to 1.1-5

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

- Update to 1.1-3

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

- Update to 1.1-2

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

- Update to 0.8-1

- Update to 0.7-9

- Update to 0.7-8

- Update to 0.7-7

- Update to 0.7-4

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

- Update to 0.6-15

- Update to 0.6-13

- Update to 0.6-8

- Update to 0.6-6
- Add "compiles" argument to USES=cran

- Update to 0.6-5

- Update to 0.6-4

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 0.5-92
- Fix LICENSE

- Update to 0.5-88
- Update WWW in pkg-descr

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

- Update to 0.5-74

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

- Update to 0.5-71

Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen

- Update to 0.5-68

Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

- Update to 0.5-65

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

- Update to 0.5-64

- Update to 0.5-63

- Update to 0.5-62

- Update to 0.5-61

- Update to 0.5-60

- Update to 0.5-57

Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota

update math/R to 2.15.3, and adjust dependent ports

- Update to 0.5-56

update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen

- Update to 0.5-55

- Update to 0.5-53

Feature safe:	yes

- Update to 0.5-52

Feature safe:	yes

- Update to 0.5-51
- Trim WWW: line in pkg-descr

- Update to 0.5-50
- Remove deprecated header information from Makefile

Fix typos in COMMENT

Approved by:	portmgr@ (implicit)

update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports

- Update to 0.5-46

- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]

- Update to 0.5-45

Feature safe:   yes

update math/R to 2.14.2, and adjust dependent ports

update math/R to 2.14.1, and adjust dependent ports

- Update to 0.5-43
- Fix LICENSE section

Feature safe:   yes

update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes

- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes

- Update to 0.5-41

Feature safe:   yes

update math/R to 2.13.2, and adjust dependent ports

- Add a new port: math/R-cran-spdep

  A collection of functions to create spatial weights matrix objects
  from polygon contiguities, from point patterns by distance and
  tesselations, for summarising these objects, and for permitting
  their use in spatial data analysis, including regional aggregation
  by minimum spanning tree; a collection of tests for spatial
  autocorrelation, including global Moran's I, APLE, Geary's C,
  Hubert/Mantel general cross product statistic, Empirical Bayes
  estimates and Assuno/Reis Index, Getis/Ord G and multicoloured join
  count statistics, local Moran's I and Getis/Ord G, saddlepoint
  approximations and exact tests for global and local Moran's I; and
  functions for estimating spatial simultaneous autoregressive (SAR)
  lag and error models, impact measures for lag models, weighted and
  unweighted SAR and CAR spatial regression models, semi-parametric
  and Moran eigenvector spatial filtering, GM SAR error models, and
  generalized spatial two stage least squares models.

  WWW:  http://cran.r-project.org/web/packages/spdep/