math/deal.ii: Add missing run-time dependencies

math/deal.ii: fix with OCCT-8 + some modifications

- fix with OpenCascade-8.0.0 (primary goal);
- CGAL and Taskflow are detected as build dependencies;
- kokkos is now fixed;
- GMP and MPFR are used as lib dependencies;
- the port was linked both with BLIS and NETLIB: replace them by
  OpenBLAS (note: qa still reports indirect linkage with BLIS and
  NETLIB);
- switch to c++23.

PR:		296947
Reported by:	yuri
Approved by:	yuri (maintainer)

math/deal.ii: update 9.6.2 → 9.7.1

This update is against opencascade-7.9.3
opencascade-8.0.0 potentially needs fixing.

math/arpack-ng: Flavorize on MPI implementation

Positives are that now *-mpich, *-openmpi, *-nompi
packages would be all available.

Negative is that they conflict with each other.
The files need to have the unique suffix.

All flavors are equal, there is no obvious default
among them, so suffixes were added to all of them
to make it clear which implementation is installed.

PR:		293569
Requested by:	Steve Kargl <kargl@FreeBSD.org>

math/vtk9: update 9.5.2 → 9.6.0

*/*: bump PORTREVISION after the upgrade of MPICH

*/*: chase math/gsl update to 2.8

PR:		292499

*/*: chase Open CASCADE

devel/boost: bump consumers after boost upgrade (+)

Get rid of direct dependency ob libbost_system.so, use libboost_thread.so
instead

*/*: chase the upgrade of BLIS to 2.0

*/*: chase the upgrade of OpenCascade

devel/boost: bump consumers after Boost update

*/*: chase OpenCascade

devel/boost: bump consumers after Boost-1.87 update

Sponsored by:	Future Crew, LLC

*/*: bump PORTREVISION to chase math/scalapack

*/*: bump PORTREVISION after OpenBLAS upgrade

Remark: this souldn’t be necessary, because the version of the library is the
same, but due to many changes between these releases, it is safer this way.

PR:		284314

*/*: bump PORTREVISION to chase blas/lapack, Suitesparse and BLIS

math/deal.ii: Broken on i386

Reported by:	fallout

math/deal.ii: update 9.6.1 → 9.6.2

math/sundials: update 6.6.0 → 7.2.1

math/deal.ii: Fix on 32-bit architectures

... by matching index size with that in science/PETSc.

Reported by:	fallout

math/deal.ii: update 9.5.2 → 9.6.1

devel/boost: bump consu,ers after update Boost to 1.86 release

Sponsored by:	Future Crew, LLC

math/slepc: update 3.21.2 → 3.22.0

*/*: bump PORTREVISION after the upgrade to OpenBLAS

math/deal.ii: support of OpenCascade 7.8.0

PR:		277317
Approved by:	yuri (maintainer)

math/deal.ii: update 9.5.0 → 9.5.2

*/*: bump PORTREVISION after the upgrade of MPICH to 4.1.2

math/slepc: update 3.19.2 → 3.20.0

science/PETSc: update 3.19.6 → 3.20.1

Reported by:	portscout

math/deal.ii: Small adjustments

math/deal.ii: Update 9.4.2 → 9.5.0

Reported by:	portscout

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/deal.ii: Update 9.4.1 → 9.4.2

Reported by:	portscout

math/deal.ii: Broken on armv7

Reported by:	fallout

math/deal.ii: Update 9.4.0 -> 9.4.1

Reported by:	portscout

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

*/*: bump all consumers after recent boost upgrade

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

math/deal.ii: Update 9.3.3 -> 9.4.0

Reported by:	portscout

math/sundials: Update 5.7.0 -> 6.2.0

devel/boost-all: bump all library consumers after boost upgrade

PR:	246106

math/deal.ii: Update 9.3.2 -> 9.3.3

Reported by:	portscout

math/deal.ii: Broken on aarch64

Reported by:	fallout

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

science/PETSc: Update 3.14.1 -> 3.16.3

Reported by:	portscout

math/deal.ii: Update 9.3.1 -> 9.3.2

Also add the 'test' target.

Reported by:	portscout

math/octave: Update 3.1.2 -> 5.7.0

math/deal.ii: Broken on 14

Reported by:	fallout

math/deal.ii: Bundle TBB to not hold up TBB->oneTBB transition in the ports tree

Pending https://github.com/dealii/dealii/issues/11561

PR:		252691

math/deal.ii: Update 9.3.0 -> 9.3.1

Reported by:	portscout

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6

math/deal.ii: Update 9.2.0.20201001 -> 9.3.0

Reported by:	portscout

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

math/deal.ii: remove optional dependency on expired math/slepc

math/deal.ii: Update 9.1.1 -> 9.2.0.20201001

Update devel/tbb to 2020.3 and bump dependent ports' revisions

Changelog: https://github.com/oneapi-src/oneTBB/blob/v2020.3/CHANGES

Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.

math/deal.ii: Unbreak the MPI option with the message about how math/sundials
should be compiled

Submitted by:	danilo (via e-mail)

Update devel/tbb to 2020.2 and bump dependent port's revisions

Changelog: https://github.com/oneapi-src/oneTBB/blob/tbb_2020/CHANGES

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]

Also, while here, re-generate patches using the makepatch target

[1] Changelog: https://github.com/intel/tbb/blob/v2020.0/CHANGES

devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

Update devel/tbb to 2019.8 and bump dependent ports' revisions

Changelog: https://github.com/intel/tbb/blob/tbb_2019/CHANGES

devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

math/deal.ii: Update 9.0.1 -> 9.1.1

Reported by:	portscout

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645

math/deal.ii: 9.0.0 -> 9.0.1

Build succeeds on 11, but fails on 10 and 12 due to the boost bug.[1][2]

--References--
[1] https://github.com/dealii/dealii/issues/7344
[2] https://github.com/boostorg/serialization/pull/105

Reported by:	portscout

Update devel/tbb to version 2019.1 and bump dependent ports' revisions

Also, reintegrate HTML documentation that was removed in previous version.

math/deal.ii: Fix build by disabling the MPI option; Add several other options
for various libraries

Also add boost dependency

Reported by:	fallout (breakage)

Update devel/tbb to version 2019 and bump dependent port's revisions

New port: math/deal.ii: Finite element Differential Equations Analysis Library
(DEAL)

The official name of the project is deal.II