HipMCL is a high-performance parallel algorithm for large-scale network
clustering. HipMCL parallelizes popular Markov Cluster (MCL) algorithm that has
been shown to be one of the most successful and widely used algorithms for
network clustering. It is based on random walks and was initially designed to
detect families in protein-protein interaction networks. Despite MCL's
efficiency and multi-threading support, scalability remains a bottleneck as it
fails to process networks of several hundred million nodes and billion edges in
an affordable running time. HipMCL overcomes all of these challenges by
developing massively-parallel algorithms for all components of MCL. HipMCL can
be 1000 times faster than the original MCL without any information loss. It can
easily cluster a network of ~75 million nodes with ~68 billion edges in ~2.4
hours using ~2000 nodes of Cori supercomputer at NERSC. HipMCL is developed in
C++ language and uses standard OpenMP and MPI libraries for shared- and
distributed-memory parallelization.
WWW: https://bitbucket.org/azadcse/hipmcl/wiki/Home
port deleted on 2022-07-16 REASON: Discontinued: old versions aren't compatible with new combblas-2.0, latest versions require CUDA that is not available on FreeBSD
Drop dependency on devel/openmp
- Drop if devel/llvm* was used as a substitute
Approved by: yuri, rene (earlier version)
Differential Revision: https://reviews.freebsd.org/D23020
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
devel/openmp: phase out
- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)
PR: 236907
Approved by: bapt (maintainer)
Differential Revision: https://reviews.freebsd.org/D19767
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
