notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.
New feature planned: get notified when the package is available. Now is the time to contribute ideas/suggestions.
Port details
stan C++ package for Bayesian inference, maximum likelihood estimation, etc
2.34.1 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.33.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-28 05:48:10
Last Update: 2024-01-24 08:26:01
Commit Hash: 7e0583b
License: BSD3CLAUSE
WWW:
https://mc-stan.org/
Description:
Stan is a state-of-the-art platform for statistical modeling and high-performance statistical computation. Thousands of users rely on Stan for statistical modeling, data analysis, and prediction in the social, biological, and physical sciences, engineering, and business. Users specify log density functions in Stan's probabilistic programming language and get: * full Bayesian statistical inference with MCMC sampling (NUTS, HMC) * approximate Bayesian inference with variational inference (ADVI) * penalized maximum likelihood estimation with optimization (L-BFGS)
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (192 items)
Collapse this list.
  1. /usr/local/share/licenses/stan-2.34.1/catalog.mk
  2. /usr/local/share/licenses/stan-2.34.1/LICENSE
  3. /usr/local/share/licenses/stan-2.34.1/BSD3CLAUSE
  4. include/stan/analyze/mcmc/autocovariance.hpp
  5. include/stan/analyze/mcmc/compute_effective_sample_size.hpp
  6. include/stan/analyze/mcmc/compute_potential_scale_reduction.hpp
  7. include/stan/analyze/mcmc/split_chains.hpp
  8. include/stan/callbacks/interrupt.hpp
  9. include/stan/callbacks/json_writer.hpp
  10. include/stan/callbacks/logger.hpp
  11. include/stan/callbacks/stream_logger.hpp
  12. include/stan/callbacks/stream_writer.hpp
  13. include/stan/callbacks/structured_writer.hpp
  14. include/stan/callbacks/tee_writer.hpp
  15. include/stan/callbacks/unique_stream_writer.hpp
  16. include/stan/callbacks/writer.hpp
  17. include/stan/io/array_var_context.hpp
  18. include/stan/io/chained_var_context.hpp
  19. include/stan/io/deserializer.hpp
  20. include/stan/io/dump.hpp
  21. include/stan/io/empty_var_context.hpp
  22. include/stan/io/ends_with.hpp
  23. include/stan/io/json/json_data.hpp
  24. include/stan/io/json/json_data_handler.hpp
  25. include/stan/io/json/json_error.hpp
  26. include/stan/io/json/json_handler.hpp
  27. include/stan/io/json/rapidjson_parser.hpp
  28. include/stan/io/random_var_context.hpp
  29. include/stan/io/serializer.hpp
  30. include/stan/io/stan_csv_reader.hpp
  31. include/stan/io/validate_dims.hpp
  32. include/stan/io/validate_zero_buf.hpp
  33. include/stan/io/var_context.hpp
  34. include/stan/lang/rethrow_located.hpp
  35. include/stan/mcmc/base_adaptation.hpp
  36. include/stan/mcmc/base_adapter.hpp
  37. include/stan/mcmc/base_mcmc.hpp
  38. include/stan/mcmc/chains.hpp
  39. include/stan/mcmc/covar_adaptation.hpp
  40. include/stan/mcmc/fixed_param_sampler.hpp
  41. include/stan/mcmc/hmc/base_hmc.hpp
  42. include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp
  43. include/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp
  44. include/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp
  45. include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp
  46. include/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp
  47. include/stan/mcmc/hmc/hamiltonians/ps_point.hpp
  48. include/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp
  49. include/stan/mcmc/hmc/hamiltonians/softabs_point.hpp
  50. include/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp
  51. include/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp
  52. include/stan/mcmc/hmc/integrators/base_integrator.hpp
  53. include/stan/mcmc/hmc/integrators/base_leapfrog.hpp
  54. include/stan/mcmc/hmc/integrators/expl_leapfrog.hpp
  55. include/stan/mcmc/hmc/integrators/impl_leapfrog.hpp
  56. include/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp
  57. include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp
  58. include/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp
  59. include/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp
  60. include/stan/mcmc/hmc/nuts/base_nuts.hpp
  61. include/stan/mcmc/hmc/nuts/dense_e_nuts.hpp
  62. include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp
  63. include/stan/mcmc/hmc/nuts/softabs_nuts.hpp
  64. include/stan/mcmc/hmc/nuts/unit_e_nuts.hpp
  65. include/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp
  66. include/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp
  67. include/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp
  68. include/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp
  69. include/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp
  70. include/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp
  71. include/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp
  72. include/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp
  73. include/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp
  74. include/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp
  75. include/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp
  76. include/stan/mcmc/hmc/static/base_static_hmc.hpp
  77. include/stan/mcmc/hmc/static/dense_e_static_hmc.hpp
  78. include/stan/mcmc/hmc/static/diag_e_static_hmc.hpp
  79. include/stan/mcmc/hmc/static/softabs_static_hmc.hpp
  80. include/stan/mcmc/hmc/static/unit_e_static_hmc.hpp
  81. include/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp
  82. include/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp
  83. include/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp
  84. include/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp
  85. include/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp
  86. include/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp
  87. include/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp
  88. include/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp
  89. include/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp
  90. include/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp
  91. include/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp
  92. include/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp
  93. include/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp
  94. include/stan/mcmc/hmc/xhmc/base_xhmc.hpp
  95. include/stan/mcmc/hmc/xhmc/dense_e_xhmc.hpp
  96. include/stan/mcmc/hmc/xhmc/diag_e_xhmc.hpp
  97. include/stan/mcmc/hmc/xhmc/softabs_xhmc.hpp
  98. include/stan/mcmc/hmc/xhmc/unit_e_xhmc.hpp
  99. include/stan/mcmc/sample.hpp
  100. include/stan/mcmc/stepsize_adaptation.hpp
  101. include/stan/mcmc/stepsize_adapter.hpp
  102. include/stan/mcmc/stepsize_covar_adapter.hpp
  103. include/stan/mcmc/stepsize_var_adapter.hpp
  104. include/stan/mcmc/var_adaptation.hpp
  105. include/stan/mcmc/windowed_adaptation.hpp
  106. include/stan/model/finite_diff_grad.hpp
  107. include/stan/model/grad_hess_log_prob.hpp
  108. include/stan/model/grad_tr_mat_times_hessian.hpp
  109. include/stan/model/gradient.hpp
  110. include/stan/model/gradient_dot_vector.hpp
  111. include/stan/model/hessian.hpp
  112. include/stan/model/hessian_times_vector.hpp
  113. include/stan/model/indexing.hpp
  114. include/stan/model/indexing/access_helpers.hpp
  115. include/stan/model/indexing/assign.hpp
  116. include/stan/model/indexing/assign_cl.hpp
  117. include/stan/model/indexing/assign_varmat.hpp
  118. include/stan/model/indexing/deep_copy.hpp
  119. include/stan/model/indexing/index.hpp
  120. include/stan/model/indexing/rvalue.hpp
  121. include/stan/model/indexing/rvalue_at.hpp
  122. include/stan/model/indexing/rvalue_cl.hpp
  123. include/stan/model/indexing/rvalue_index_size.hpp
  124. include/stan/model/indexing/rvalue_varmat.hpp
  125. include/stan/model/log_prob_grad.hpp
  126. include/stan/model/log_prob_propto.hpp
  127. include/stan/model/model_base.hpp
  128. include/stan/model/model_base_crtp.hpp
  129. include/stan/model/model_functional.hpp
  130. include/stan/model/model_header.hpp
  131. include/stan/model/prob_grad.hpp
  132. include/stan/model/rethrow_located.hpp
  133. include/stan/model/test_gradients.hpp
  134. include/stan/optimization/bfgs.hpp
  135. include/stan/optimization/bfgs_linesearch.hpp
  136. include/stan/optimization/bfgs_update.hpp
  137. include/stan/optimization/lbfgs_update.hpp
  138. include/stan/optimization/newton.hpp
  139. include/stan/services/diagnose/defaults.hpp
  140. include/stan/services/diagnose/diagnose.hpp
  141. include/stan/services/error_codes.hpp
  142. include/stan/services/experimental/advi/defaults.hpp
  143. include/stan/services/experimental/advi/fullrank.hpp
  144. include/stan/services/experimental/advi/meanfield.hpp
  145. include/stan/services/optimize/bfgs.hpp
  146. include/stan/services/optimize/defaults.hpp
  147. include/stan/services/optimize/laplace_sample.hpp
  148. include/stan/services/optimize/lbfgs.hpp
  149. include/stan/services/optimize/newton.hpp
  150. include/stan/services/pathfinder/multi.hpp
  151. include/stan/services/pathfinder/psis.hpp
  152. include/stan/services/pathfinder/single.hpp
  153. include/stan/services/sample/defaults.hpp
  154. include/stan/services/sample/fixed_param.hpp
  155. include/stan/services/sample/hmc_nuts_dense_e.hpp
  156. include/stan/services/sample/hmc_nuts_dense_e_adapt.hpp
  157. include/stan/services/sample/hmc_nuts_diag_e.hpp
  158. include/stan/services/sample/hmc_nuts_diag_e_adapt.hpp
  159. include/stan/services/sample/hmc_nuts_unit_e.hpp
  160. include/stan/services/sample/hmc_nuts_unit_e_adapt.hpp
  161. include/stan/services/sample/hmc_static_dense_e.hpp
  162. include/stan/services/sample/hmc_static_dense_e_adapt.hpp
  163. include/stan/services/sample/hmc_static_diag_e.hpp
  164. include/stan/services/sample/hmc_static_diag_e_adapt.hpp
  165. include/stan/services/sample/hmc_static_unit_e.hpp
  166. include/stan/services/sample/hmc_static_unit_e_adapt.hpp
  167. include/stan/services/sample/standalone_gqs.hpp
  168. include/stan/services/util/create_rng.hpp
  169. include/stan/services/util/create_unit_e_dense_inv_metric.hpp
  170. include/stan/services/util/create_unit_e_diag_inv_metric.hpp
  171. include/stan/services/util/duration_diff.hpp
  172. include/stan/services/util/experimental_message.hpp
  173. include/stan/services/util/generate_transitions.hpp
  174. include/stan/services/util/gq_writer.hpp
  175. include/stan/services/util/initialize.hpp
  176. include/stan/services/util/inv_metric.hpp
  177. include/stan/services/util/mcmc_writer.hpp
  178. include/stan/services/util/read_dense_inv_metric.hpp
  179. include/stan/services/util/read_diag_inv_metric.hpp
  180. include/stan/services/util/run_adaptive_sampler.hpp
  181. include/stan/services/util/run_sampler.hpp
  182. include/stan/services/util/validate_dense_inv_metric.hpp
  183. include/stan/services/util/validate_diag_inv_metric.hpp
  184. include/stan/variational/advi.hpp
  185. include/stan/variational/base_family.hpp
  186. include/stan/variational/families/normal_fullrank.hpp
  187. include/stan/variational/families/normal_meanfield.hpp
  188. include/stan/variational/print_progress.hpp
  189. include/stan/version.hpp
  190. @owner
  191. @group
  192. @mode
Collapse this list.
Dependency lines:
  • stan>0:math/stan
To install the port:
cd /usr/ports/math/stan/ && make install clean
To add the package, run one of these commands:
  • pkg install math/stan
  • pkg install stan
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: stan
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1706078819 SHA256 (stan-dev-stan-v2.34.1_GH0.tar.gz) = c38864706bbeb1ee1ad92d97cd0d8db24844bb01c4a431bd7f9d6e87fd0f0bd0 SIZE (stan-dev-stan-v2.34.1_GH0.tar.gz) = 4377341

Expand this list (2 items)

Collapse this list.

SHA256 (stan-dev-math-c26bd83_GH0.tar.gz) = 4b02d9dcdd4f7d176f7fa12e60b0a9929b17158fc9e24858912c44f7eed566b1 SIZE (stan-dev-math-c26bd83_GH0.tar.gz) = 30100879

Collapse this list.


Packages (timestamps in pop-ups are UTC):
stan
ABIlatestquarterly
FreeBSD:13:aarch642.34.12.33.0
FreeBSD:13:amd642.34.12.33.0
FreeBSD:13:armv6--
FreeBSD:13:armv72.34.12.33.0
FreeBSD:13:i3862.34.12.33.0
FreeBSD:13:powerpc--
FreeBSD:13:powerpc64-2.33.0
FreeBSD:13:powerpc64le-2.33.0
FreeBSD:14:aarch642.34.12.33.0
FreeBSD:14:amd642.34.12.33.0
FreeBSD:14:armv6--
FreeBSD:14:armv72.34.12.33.0
FreeBSD:14:i3862.34.12.33.0
FreeBSD:14:powerpc--
FreeBSD:14:powerpc64-2.33.0
FreeBSD:14:powerpc64le-2.33.0
FreeBSD:15:aarch642.34.1-
FreeBSD:15:amd642.34.1-
FreeBSD:15:armv72.34.1-
FreeBSD:15:powerpc--
FreeBSD:15:powerpc642.34.1-
FreeBSD:15:powerpc64le2.34.1-
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
Test dependencies:
  1. gmake : devel/gmake
  2. python3.9 : lang/python39
Runtime dependencies:
  1. stanmath>0 : math/stanmath
  2. eigen3.pc : math/eigen3
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
math_stan
USES:
eigen:3,run gmake python:test shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/stan-dev/stan/tar.gz/v2.34.1?dummy=/
Collapse this list.

Number of commits found: 12

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.34.1
24 Jan 2024 08:26:01
commit hash: 7e0583b2805635a0e523eca7e61becd958a03aa1commit hash: 7e0583b2805635a0e523eca7e61becd958a03aa1commit hash: 7e0583b2805635a0e523eca7e61becd958a03aa1commit hash: 7e0583b2805635a0e523eca7e61becd958a03aa1 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: update 2.33.0 → 2.34.1

Reported by:	portscout
2.33.0
06 Sep 2023 07:20:52
commit hash: b5eb1ebf48b3c70815e0c34b02f617cd04ec346dcommit hash: b5eb1ebf48b3c70815e0c34b02f617cd04ec346dcommit hash: b5eb1ebf48b3c70815e0c34b02f617cd04ec346dcommit hash: b5eb1ebf48b3c70815e0c34b02f617cd04ec346d files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: update 2.32.2 → 2.33.0

Reported by:	portscout
2.32.2
22 May 2023 06:54:55
commit hash: 21dc777fc4b8d6b48715b6e031f863f728935cc8commit hash: 21dc777fc4b8d6b48715b6e031f863f728935cc8commit hash: 21dc777fc4b8d6b48715b6e031f863f728935cc8commit hash: 21dc777fc4b8d6b48715b6e031f863f728935cc8 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.30.0 → 2.32.2

Reported by:	portscout
2.30.0_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.30.0
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.30.0
03 Jul 2022 02:50:41
commit hash: 4a0583bd751949cff82c5d8e5c4b9e4729df1407commit hash: 4a0583bd751949cff82c5d8e5c4b9e4729df1407commit hash: 4a0583bd751949cff82c5d8e5c4b9e4729df1407commit hash: 4a0583bd751949cff82c5d8e5c4b9e4729df1407 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.29.2 -> 2.30.0

Reported by:	portscout
2.29.2
27 Mar 2022 02:40:08
commit hash: 3d1f32109976d4f9ee662a7ef9fddfb51c5e33b3commit hash: 3d1f32109976d4f9ee662a7ef9fddfb51c5e33b3commit hash: 3d1f32109976d4f9ee662a7ef9fddfb51c5e33b3commit hash: 3d1f32109976d4f9ee662a7ef9fddfb51c5e33b3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.29.1 -> 2.29.2

Reported by:	portscout
2.29.1
06 Mar 2022 17:10:00
commit hash: 866601a59f40ef8989c13942c3c1776c1ac7dc69commit hash: 866601a59f40ef8989c13942c3c1776c1ac7dc69commit hash: 866601a59f40ef8989c13942c3c1776c1ac7dc69commit hash: 866601a59f40ef8989c13942c3c1776c1ac7dc69 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.28.2 -> 2.29.1

Reported by:	portscout
2.28.2
29 Nov 2021 17:25:48
commit hash: 2ac6557e96f67021517fcf3d68d31a03f54a1e0fcommit hash: 2ac6557e96f67021517fcf3d68d31a03f54a1e0fcommit hash: 2ac6557e96f67021517fcf3d68d31a03f54a1e0fcommit hash: 2ac6557e96f67021517fcf3d68d31a03f54a1e0f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.28.0 -> 2.28.2

Reported by:	portscout
2.28.0
14 Oct 2021 20:08:00
commit hash: 1207efeecf4976eb2768f27b98e74ffcee2a3082commit hash: 1207efeecf4976eb2768f27b98e74ffcee2a3082commit hash: 1207efeecf4976eb2768f27b98e74ffcee2a3082commit hash: 1207efeecf4976eb2768f27b98e74ffcee2a3082 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: Update 2.27.0 -> 2.28.0

Reported by:	portscout
2.27.0
28 Aug 2021 05:46:41
commit hash: 19d3a5b611407b4b7f99479c80c0d28b78a83440commit hash: 19d3a5b611407b4b7f99479c80c0d28b78a83440commit hash: 19d3a5b611407b4b7f99479c80c0d28b78a83440commit hash: 19d3a5b611407b4b7f99479c80c0d28b78a83440 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/stan: New port: C++ package for Bayesian inference, maximum likelihood
estimation, etc

Number of commits found: 12