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Port details
py-toil Pipeline management software for clusters
5.6.0 misc on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.6.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-16 06:56:28
Last Update: 2024-03-09 15:21:33
Commit Hash: ae18dee
Also Listed In: python
License: APACHE20
WWW:
https://github.com/DataBiosphere/toil
Description:
Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the principles of functional programming.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}toil>0:misc/py-toil@${PY_FLAVOR}
To install the port:
cd /usr/ports/misc/py-toil/ && make install clean
To add the package, run one of these commands:
  • pkg install misc/py-toil
  • pkg install py39-toil
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-toil listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-toil
Package flavors (<flavor>: <package>)
  • py39: py39-toil
distinfo:
TIMESTAMP = 1652031331 SHA256 (toil-5.6.0.tar.gz) = 9bab73ad10822d42cefb007c86d525b7428448b9bfbdd21e4f306b8a19c0a3f2 SIZE (toil-5.6.0.tar.gz) = 518647

Packages (timestamps in pop-ups are UTC):
py37-toil
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--5.2.0---5.1.0-
FreeBSD:13:quarterly--------
FreeBSD:14:latest--------
FreeBSD:14:quarterly--------
FreeBSD:15:latest--n/a-n/a---
FreeBSD:15:quarterly--n/a-n/a---
 

py39-toil
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest5.6.05.6.0-5.6.05.6.0---
FreeBSD:13:quarterly5.6.05.6.05.6.05.6.05.6.0-5.6.05.6.0
FreeBSD:14:latest5.6.05.6.05.6.05.6.05.6.05.6.0-5.6.0
FreeBSD:14:quarterly5.6.05.6.0-5.6.05.6.0-5.6.05.6.0
FreeBSD:15:latest5.6.05.6.0n/a5.6.0n/a-5.6.0-
FreeBSD:15:quarterly--n/a-n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  2. python3.9 : lang/python39
Test dependencies:
  1. py39-pytest-cov>0 : devel/py-pytest-cov@py39
  2. py39-boto3>0 : www/py-boto3@py39
  3. py39-libcloud>=0.14.0 : net/py-libcloud@py39
  4. py39-pytest>=7,1 : devel/py-pytest@py39
  5. python3.9 : lang/python39
Runtime dependencies:
  1. py39-addict>=2.2.1 : devel/py-addict@py39
  2. py39-dateutil>0 : devel/py-dateutil@py39
  3. py39-dill>=0.3.2 : devel/py-dill@py39
  4. py39-docker>0 : sysutils/py-docker@py39
  5. py39-enlighten>=1.5.2 : devel/py-enlighten@py39
  6. py39-psutil>=3.0.1 : sysutils/py-psutil@py39
  7. py39-pytz>=2012 : devel/py-pytz@py39
  8. py39-requests>=2 : www/py-requests@py39
  9. py39-tes>0 : misc/py-tes@py39
  10. py39-yaml>=5 : devel/py-yaml@py39
  11. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  12. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
misc_py-toil
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/t/toil/
  2. https://pypi.org/packages/source/t/toil/
Collapse this list.

Number of commits found: 23

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.6.0
09 Mar 2024 15:21:33
commit hash: ae18dee69c968882db8e877a14a4a3da674d7344commit hash: ae18dee69c968882db8e877a14a4a3da674d7344commit hash: ae18dee69c968882db8e877a14a4a3da674d7344commit hash: ae18dee69c968882db8e877a14a4a3da674d7344 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
misc/py-toil: Convert to USE_PYTHON=pytest

Approved by:	portmgr (blanket)
With hat:	python
5.6.0
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
5.6.0
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
5.6.0
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
5.6.0
08 May 2022 18:02:08
commit hash: 734d55c0a80154bbf5093378f7cc474dbe198b6acommit hash: 734d55c0a80154bbf5093378f7cc474dbe198b6acommit hash: 734d55c0a80154bbf5093378f7cc474dbe198b6acommit hash: 734d55c0a80154bbf5093378f7cc474dbe198b6a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
misc/py-toil: Update 5.4.0 -> 5.6.0

Reported by:	portscout
5.4.0
27 Apr 2022 11:42:13
commit hash: 660b856c0cd8f29ee3cd4b4e3a338f406e5cf5e4commit hash: 660b856c0cd8f29ee3cd4b4e3a338f406e5cf5e4commit hash: 660b856c0cd8f29ee3cd4b4e3a338f406e5cf5e4commit hash: 660b856c0cd8f29ee3cd4b4e3a338f406e5cf5e4 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
misc/py-toil: switch to USES=pytest, add missing TEST_DEPENDS

More test depends are missing and are required to fix the tests, but
they do not seem to be available in the Ports Collection yet

Reported by:	reprise
Approved by:	portmgr blanket
5.4.0
27 Jun 2021 03:40:03
commit hash: 5688ca909a101bcd8cffdad94822dc1edad32c7dcommit hash: 5688ca909a101bcd8cffdad94822dc1edad32c7dcommit hash: 5688ca909a101bcd8cffdad94822dc1edad32c7dcommit hash: 5688ca909a101bcd8cffdad94822dc1edad32c7d files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
misc/py-toil: Update 5.3.0 -> 5.4.0

Reported by:	portscout
5.3.0
19 Apr 2021 06:39:22
commit hash: 516213b823899f33a79cfe6a57e33f5e443d5f81commit hash: 516213b823899f33a79cfe6a57e33f5e443d5f81commit hash: 516213b823899f33a79cfe6a57e33f5e443d5f81commit hash: 516213b823899f33a79cfe6a57e33f5e443d5f81 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
misc/py-toil: Update 5.2.0 -> 5.3.0

Reported by:	portscout
5.2.0
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
5.2.0
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
5.2.0
11 Jan 2021 07:24:54
Revision:561192Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 5.1.0 -> 5.2.0

Reported by:	portscout
5.1.0
28 Dec 2020 23:02:15
Revision:559531Original commit files touched by this commit
antoine search for other commits by this committer
Drop python 2.7 support from a few ports

With hat:	portmgr
5.1.0
23 Dec 2020 01:13:01
Revision:558953Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 5.0.0 -> 5.1.0
5.0.0
10 Dec 2020 01:27:17
Revision:557408Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 4.2.0 -> 5.0.0
4.2.0
14 Aug 2020 03:05:14
Revision:544862Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 3.22.0 -> 4.2.0
3.22.0
23 Feb 2020 15:25:53
Revision:526925Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
3.22.0
29 Jan 2020 07:06:35
Revision:524535Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 3.21.0 -> 3.22.0

Reported by:	portscout
3.21.0
16 Nov 2019 17:56:34
Revision:517766Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 3.20.0 -> 3.21.0

Reported by:	portscout
3.20.0
01 Jun 2019 06:38:09
Revision:503221Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 3.19.0 -> 3.20.0

Reported by:	portscout
3.19.0
30 Mar 2019 22:19:53
Revision:497366Original commit files touched by this commit
yuri search for other commits by this committer
misc/py-toil: Update 3.18.0 -> 3.19.0

Reported by:	portscout
3.18.0
16 Oct 2018 21:57:27
Revision:482260Original commit files touched by this commit
antoine search for other commits by this committer
py-toil is not compatible with python3
3.18.0
16 Oct 2018 06:56:18
Revision:482204Original commit files touched by this commit
yuri search for other commits by this committer
New port: misc/py-toil: Pipeline management software for clusters

Number of commits found: 23