| Port details on branch 2022Q2 |
- afni Advanced Functional Neuro Imaging
- 22.0.21_2 science
 =0      22.0.21_2Version of this port present on the latest quarterly branch. - Maintainer: fernape@FreeBSD.org
- Port Added: 2022-04-24 04:16:20
- Last Update: 2022-04-10 19:47:23
- Commit Hash: 035e778
- Also Listed In: biology graphics perl5 python
- License: GPLv2
- WWW:
- http://afni.nimh.nih.gov/afni/
- Description:
- AFNI (Analysis of Functional Neuro Imaging) is a tool for analyzing
3-dimensional images, especially functional MRI images used in brain mapping
research.
WWW: http://afni.nimh.nih.gov/afni/
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- Conflicts:
- CONFLICTS:
- im
- nifticlib
- open-usp-tukubai
- To install the port:
- cd /usr/ports/science/afni/ && make install clean
- To add the package, run one of these commands:
- pkg install science/afni
- pkg install afni
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: afni
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1647930439
SHA256 (afni-afni-AFNI_22.0.21_GH0.tar.gz) = 165afc28d714877c5b70af22f6b51d0c57742b9e6c6113e55a51794c246c0428
SIZE (afni-afni-AFNI_22.0.21_GH0.tar.gz) = 43934548
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gm4 : devel/m4
- R : math/R
- R-cran-lme4>0 : math/R-cran-lme4
- R-cran-snow>0 : science/R-cran-snow
- R-cran-psych>0 : math/R-cran-psych
- msgfmt : devel/gettext-tools
- gmake>=4.3 : devel/gmake
- python3.8 : lang/python38
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xi.pc : x11/libXi
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- endian : sysutils/endian
- mpeg_encode : multimedia/mpeg_encode
- qhull : math/qhull
- R : math/R
- R-cran-lme4>0 : math/R-cran-lme4
- R-cran-snow>0 : science/R-cran-snow
- R-cran-psych>0 : math/R-cran-psych
- cjpeg : graphics/jpeg-turbo
- python3.8 : lang/python38
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xi.pc : x11/libXi
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Library dependencies:
-
- libexpat.so : textproc/expat2
- libXm.so : x11-toolkits/open-motif
- libf2c.so : lang/f2c
- libfontconfig.so : x11-fonts/fontconfig
- libfreetype.so : print/freetype2
- libgsl.so : math/gsl
- libicudata.so : devel/icu
- libnetcdff.so : science/netcdf-fortran
- libnetpbm.so : graphics/netpbm
- libpcre2-8.so : devel/pcre2
- libpng16.so : graphics/png
- libxml2.so : textproc/libxml2
- libintl.so : devel/gettext-runtime
- libGL.so : graphics/libglvnd
- libGLU.so : graphics/libGLU
- libglib-2.0.so : devel/glib20
- libintl.so : devel/gettext-runtime
- libXm.so.4 : x11-toolkits/open-motif
- libreadline.so.8 : devel/readline
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for afni-22.0.21_2:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- science_afni
- USES:
- gettext gl gmake gnome iconv jpeg:run motif readline perl5 python shebangfix tar:xz xorg
- pkg-message:
- For install:
- For quick info, run "man afni".
For AFNI configuration and usage, please visit the AFNI WEB site at
http://afni.nimh.nih.gov.
---
SUMA requires the nVidia graphics driver (x11/nvidia-driver*)
or DRI (graphics/dri).
---
FreeBSD ports for other AFNI versions are available at
https://github.com/outpaddling/freebsd-ports-wip
---
For large 3dDeconvolve analyses, you may need to increase one or
more of the following shared memory limits using sysctl (and
/etc/sysctl.conf to make the changes permanent):
kern.ipc.shmall
kern.ipc.shmmax
kern.ipc.shmmin
kern.ipc.shmmni
kern.ipc.shmseg
---
AFNI_PLUGIN_PATH should be set to /usr/local/lib/afni:/usr/local/share/afni
AFNI_GLOBAL_SESSION should be set to /usr/local/share/afni.
You can do this by sourcing /usr/local/etc/mri/afni.profiles for
Bourne-style shells or or /usr/local/etc/mri/afni.cshrc for C-style shells.
- Master Sites:
|
Number of commits found: 1
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
22.0.21_2
10 Apr 2022 19:47:23
 |
Charlie Li (vishwin) |
textproc/libxml2: bump all LIB_DEPENDS consumers
This is a separate and direct commit to quarterly as PORTREVISIONs
may not match from main.
PR: 262853, 262940, 262877
Approved by: fluffy (mentor) |
Number of commits found: 1
|
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