19:20 Fernando Apesteguía (fernape) 

science/afni: update to 22.0.09

    6807eec

07:07 Fernando Apesteguía (fernape) 

science/afni: udpate to 22.0.07

    b08d3ad

12:24 Fernando Apesteguía (fernape) 

science/afni: update to 22.0.06

    a791f77

09:26 Fernando Apesteguía (fernape) 

science/afni: update to 22.0.03

    b1ed469

09:20 Fernando Apesteguía (fernape) 

science/afni: update to 22.0.00

    549b682

19:41 Tobias C. Berner (tcberner) 

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

    654acd8

20:34 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.17

    569acd7

21:31 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.16

    1391cf0

10:54 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.13

    29471de

13:10 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.12

    88963ff

09:06 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.10

    ae73298

21:32 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.09

    2804094

15:07 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.07

While here, add missing dependencies.

    d2b8750

07:02 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.05

Reported by:	portscout

    1c13a3f

09:50 Stefan Eßer (se) 

*/*: Remove redundant '-[0-9]*' from CONFLICTS

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Many CONFLICTS definitions used patterns like "bash-[0-9]*" to filter
for the bash package in any version. But that pattern is functionally
identical with just "bash".

Approved by:	portmgr (blanket)

    819f25b

11:42 Piotr Kubaj (pkubaj) 

science/afni: fix build on non-x86

fpsetprec() is only on amd64 and i386 and requires x87 FPU. It's possible to
build without x87, just how it's done on Linux.

    cb177d8

16:20 Fernando Apesteguía (fernape) 

science/afni: update to 21.3.00

    e2f9834

07:19 Fernando Apesteguía (fernape) 

science/afni: update to 21.2.10

    4e6062a

05:41 Fernando Apesteguía (fernape) 

science/afni: update to 21.2.09

    292ec73

13:58 Fernando Apesteguía (fernape) 

science/afni: update to 21.2.06

 * Remove openmp support. We don't seem to need it.
 * Adjust patch
 * Add -fcommon to make it build in 13 and 14-current
 * Add patch to include -DPIC -fPIC in i386. Otherwise we get:

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in
readonly segment

    71ac810

17:35 Fernando Apesteguía (fernape) 

science/afni: update to 21.2.01

    2bee1ca

04:22 Neel Chauhan (nc) 

science/afni: Update to 21.2.00

    120163f

20:45 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.20

    d6fa85d

13:44 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.19

    c4a4d86

18:02 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.16

    1f1f18a

06:55 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.13

    62516db

18:53 Kevin Bowling (kbowling) 

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

    da3162c

19:31 Tobias C. Berner (tcberner) 

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
	* updated exponential fitting example for nonlinear least squares
	* added banded LU decomposition and solver (gsl_linalg_LU_band)
	* New functions added to the library:
	      - gsl_matrix_norm1
	      - gsl_spmatrix_norm1
	      - gsl_matrix_complex_conjtrans_memcpy
	      - gsl_linalg_QL: decomp, unpack
	      - gsl_linalg_complex_QR_* (thanks to Christian Krueger)
	      - gsl_vector_sum
	      - gsl_matrix_scale_rows
	      - gsl_matrix_scale_columns
	      - gsl_multilarge_linear_matrix_ptr
	      - gsl_multilarge_linear_rhs_ptr
	      - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense)
	      - gsl_spmatrix_dense_sub
	      - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
	      - gsl_linalg_QR_UD: decomp, lssolve
	      - gsl_linalg_QR_UU: decomp, lssolve, QTvec
	      - gsl_linalg_QR_UZ: decomp
	      - gsl_multifit_linear_lcurvature
	      - gsl_spline2d_eval_extrap
	* bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me)
	* made gsl_sf_legendre_array_index() inline and documented
	      - gsl_sf_legendre_nlm()

[1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS

PR:		256423
Exp-run by:	antoine

    63e653a

07:48 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.12

    de8f362

20:54 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.09

    b15c239

05:36 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.08

    5b1a889

12:19 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.07

    e86a789

15:54 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.06

    90697f1

07:37 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.04

    eea49ad

07:03 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.03

    bc5a5fb

18:21 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.02

    68a233c

15:37 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.01

    7020778

08:09 Mathieu Arnold (mat) 

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

    cf118cc

07:02 Fernando Apesteguía (fernape) 

science/afni: update to 21.1.00

    f2e32f0

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

07:56 fernape 

science/afni: update to 21.0.21

 

16:36 fernape 

science/afni: update to 21.0.20

While here, adopt port.

Reported by:	portscout

 

16:37 fernape 

science/afni: update to 21.0.19

Reported by:	portscout

 

19:13 nc 

science/afni: Update to 21.0.18

 

07:54 fernape 

science/afni: update to 21.0.17

Reported by:	portscout

 

07:56 fernape 

science/afni: update to 21.0.16

Reported by:	portscout

 

08:21 fernape 

science/afni: update to 21.0.15

Reported by:	portscout

 

08:50 fernape 

science/afni: update to 21.0.14

Reported by:	portscout

 

06:09 nc 

science/afni: Update to 21.0.13

 

09:36 fernape 

science/afni: update to 21.0.12

Reported by:	portscout

 

12:26 fernape 

science/afni: update to 21.0.10

Reported by:	portscout

 

23:18 nc 

science/afni: Update to 21.0.09

 

22:36 fernape 

science/afni: update to 21.0.08

Reported by:	portscout

 

22:12 nc 

science/afni: Update to 21.0.07

 

12:53 fernape 

science/afni: update to 21.0.6

Reported by:	portscout

 

09:27 fernape 

science/afni: update to 21.0.04

Reported by:	portscout

 

08:37 fernape 

science/afni: update to 21.0.03

Reported by:	portscout

 

14:23 fernape 

science/afni: update to 21.0.02

Reported by:	portscout

 

08:34 fernape 

science/afni: update to 21.0.00

Reported by:	portscout

 

15:33 rene 

science/afni: use math/qhull instead of expired math/qhull5

 

13:06 fernape 

science/afni: update to 20.3.04

Reported by:	portscout

 

14:21 fernape 

science/afni: update to 20.3.03

Reported by:	portscout

 

17:24 fernape 

science/afni: update to 20.3.02

Reported by:	portscout

 

12:07 fernape 

science/afni: update to 20.3.00

Reported by:	portscout

 

11:11 fernape 

science/afni: update to 20.2.19

Reported by:	portscout

 

17:43 fernape 

science/afni: update to 20.2.18

Reported by:	portscout

 

07:16 fernape 

science/afni: update to 20.2.16

Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"

Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:

"This program (3dAnatNudge) is old, obsolete, and not maintained!"

Reported by:	portscout

 

17:32 fernape 

science/afni: update to 20.2.14

Reported by:	portscout

 

15:57 fernape 

science/afni: update to 20.2.13

Reported by:	portscout

 

10:46 fernape 

science/afni: update to 20.2.12

Reported by:	portscout

 

05:44 fernape 

science/afni: update to 20.2.11

Reported by:	portscout

 

17:02 fernape 

science/afni: update to 20.2.08

Reported by:	portscout

 

16:10 fernape 

science/afni: update to 20.2.06

Reported by:	portscout

 

06:19 fernape 

science/afni: update to 20.2.05

Reported by:	portscout

 

10:40 fernape 

science/afni: update to 20.2.00

Reported by:	portscout

 

06:55 fernape 

science/afni: update to 20.1.18

While here:

 * Reorder some variables
 * Remove duplicate USE_GL

Reported by:	portscout

 

14:43 pi 

science/afni: update 20.1.16 -> 20.1.17

Reported by:	portscout

 

06:55 fernape 

science/afni: update to 20.1.16

Reported by:	portscout

 

06:31 fernape 

science/afni: update to 20.1.15

Reported by:	portscout

 

09:25 fernape 

science/afni: Update to 20.1.14

Reported by:	portscout

 

16:49 fernape 

science/afni: update to 20.1.13

Reported by:	portscout

 

14:44 fernape 

science/afni: update to 20.1.12

Reported by:	portscout

 

15:20 fernape 

science/afni: update to 20.1.11

Reported by:	portscout

 

16:11 fernape 

science/afni: update to 20.1.10

Reported by:	portscout

 

05:45 fernape 

science/afni: update to 20.1.07

Reported by:	portscout

 

01:29 linimon 

Mark as BROKEN on powerpc64:

  ./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'

While here, remove OBE sparc64 stanza.

 

08:22 fernape 

science/afni: update to 20.1.06

Reported by:	portscout

 

16:07 jrm 

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

 

15:03 fernape 

science/afni: update to 20.1.05

Reported by:	portscout

 

06:55 fernape 

science/afni: update to 20.1.03

Reported by:	portscout

 

06:34 fernape 

science/afni: update to 20.1.02

Reported by:	portscout

 

12:21 jwb 

science/afni: Upgrade to 20.1.02

Added some common R-cran run dependencies
Removed obsolete reinplace patches
Improved do-install to better fit filesystem hierarchy
Releasing maintainership as I no longer work with any AFNI users

Reported by:    portscout

 

23:41 tcberner 

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

 

10:56 zeising 

science/afni: Remove dependency on libXp

Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni

 

16:18 zeising 

Deprecate x11/libXp, it is deprecated upstream

Deprecate x11/libXp, since it is about to be deprecated upstream.  Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff

Sprinkle USES=xorg as needed.

Discussed with:	bapt

 

17:11 sunpoet 

Bump PORTREVISION for science/netcdf-fortran shlib change

 

20:46 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

 

19:00 jwb 

science/afni: Upgrade to 19.1.20

Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)

 

19:14 jwb 

science/afni: Upgrade to 19.1.18

Minor bugfixes/enhancements

 

12:59 jwb 

science/afni: Upgrade to 19.1.14

Minor bug fixes and enhancements, some FreeBSD patches upstreamed