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Port details
cardioid Cardiac simulation toolkit
g20211026_3 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout g20211026_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-08-24 20:33:07
Last Update: 2024-01-01 11:49:51
Commit Hash: f2489ab
License: MIT
WWW:
https://github.com/LLNL/cardioid
Description:
Cardioid is a cardiac multiscale simulation suite spanning from subcellular mechanisms up to simulations of organ-level clinical phenomena. The suite contains tools for simulating cardiac electrophysiology, cardiac mechanics, torso-ECGs, cardiac meshing and fiber generation tools.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (6 items)
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  1. bin/cardioid
  2. bin/compileReaction
  3. bin/singleCell
  4. /usr/local/share/licenses/cardioid-g20211026_3/catalog.mk
  5. /usr/local/share/licenses/cardioid-g20211026_3/LICENSE
  6. /usr/local/share/licenses/cardioid-g20211026_3/MIT
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Dependency lines:
  • cardioid>0:science/cardioid
To install the port:
cd /usr/ports/science/cardioid/ && make install clean
To add the package, run one of these commands:
  • pkg install science/cardioid
  • pkg install cardioid
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: cardioid
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1661371882 SHA256 (LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz) = 16bfedb27110170adcf8f3090379a56c8e1637256e2761e85d98c9c043dcf970 SIZE (LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz) = 6781832

Expand this list (2 items)

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SHA256 (mfem-mfem-v4.4_GH0.tar.gz) = 0325a57854d9268dfe3f8d9b03836eb01b00a966d93162e6249857e9fab9c61f SIZE (mfem-mfem-v4.4_GH0.tar.gz) = 3078651

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Packages (timestamps in pop-ups are UTC):
cardioid
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-g20211026_3------
FreeBSD:13:quarterly-g20211026_3------
FreeBSD:14:latest-g20211026_3------
FreeBSD:14:quarterly-g20211026_3------
FreeBSD:15:latest-g20211026_3n/a-n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
Runtime dependencies:
  1. bash : shells/bash
Library dependencies:
  1. libblas.so : math/blas
  2. liblapack.so : math/lapack
  3. libmpich.so : net/mpich
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for cardioid-g20211026_3: MFEM=off: Build with MFEM mesh library OPENMP=on: Parallel processing support via OpenMP ====> MPI (Message Passing Interface) support: you have to select exactly one of them NOMPI=off: Build without parallel processing support MPICH=on: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings
Options name:
science_cardioid
USES:
cmake:testing compiler:c++11-lang shebangfix mpi:mpich pkgconfig
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/LLNL/cardioid/tar.gz/2f66d9f?dummy=/
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Number of commits found: 6

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
g20211026_3
01 Jan 2024 11:49:51
commit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfdcommit hash: f2489ab0c721f5ec60a9f8074e904cfbe5d21dfd files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: chase the upgrade of BLAS / LAPACK to 3.12.0

PR:		275860
g20211026_2
10 Dec 2023 10:23:11
commit hash: 843da99a87b4c6b3953bcd4153ed1212636783c9commit hash: 843da99a87b4c6b3953bcd4153ed1212636783c9commit hash: 843da99a87b4c6b3953bcd4153ed1212636783c9commit hash: 843da99a87b4c6b3953bcd4153ed1212636783c9 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade of MPICH to 4.1.2
g20211026_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
g20211026
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
g20211026
24 Aug 2022 20:32:26
commit hash: 0b9278ec684ab7923315214fec4171e97e7a021fcommit hash: 0b9278ec684ab7923315214fec4171e97e7a021fcommit hash: 0b9278ec684ab7923315214fec4171e97e7a021fcommit hash: 0b9278ec684ab7923315214fec4171e97e7a021f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/cardioid: New port: Cardiac simulation toolkit

Number of commits found: 6