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Port details
h5utils Set of utilities for visualization and conversion of HDF5 format
1.13.2_3 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.13.2_2Version of this port present on the latest quarterly branch.
Maintainer: eduardo@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2011-03-18 19:43:05
Last Update: 2024-01-27 10:52:26
Commit Hash: 7aae4b5
License: GPLv2 MIT
WWW:
https://github.com/NanoComp/h5utils
Description:
h5utils is a set of utilities for visualization and conversion of scientific data in the free, portable HDF5 format. Besides providing a simple tool for batch visualization as PNG images, h5utils also includes programs to convert HDF5 datasets into the formats required by other free visualization software (e.g. plain text, Vis5d, and VTK).
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (47 items)
Collapse this list.
  1. /usr/local/share/licenses/h5utils-1.13.2_3/catalog.mk
  2. /usr/local/share/licenses/h5utils-1.13.2_3/LICENSE
  3. /usr/local/share/licenses/h5utils-1.13.2_3/GPLv2
  4. /usr/local/share/licenses/h5utils-1.13.2_3/MIT
  5. bin/h4fromh5
  6. bin/h5fromh4
  7. bin/h5fromtxt
  8. bin/h5math
  9. bin/h5topng
  10. bin/h5totxt
  11. bin/h5tovtk
  12. @comment lib/octave/%%OCTAVE_VERSION%%/site/oct/%%CONFIGURE_TARGET%%/h5read.oct
  13. share/man/man1/h5fromh4.1.gz
  14. share/man/man1/h5fromtxt.1.gz
  15. share/man/man1/h5math.1.gz
  16. share/man/man1/h5topng.1.gz
  17. share/man/man1/h5totxt.1.gz
  18. share/man/man1/h5tovtk.1.gz
  19. share/h5utils/colormaps/BrBG
  20. share/h5utils/colormaps/RdBu
  21. share/h5utils/colormaps/autumn
  22. share/h5utils/colormaps/bluered
  23. share/h5utils/colormaps/bone
  24. share/h5utils/colormaps/colorcube
  25. share/h5utils/colormaps/cool
  26. share/h5utils/colormaps/copper
  27. share/h5utils/colormaps/dkbluered
  28. share/h5utils/colormaps/flag
  29. share/h5utils/colormaps/gray
  30. share/h5utils/colormaps/green
  31. share/h5utils/colormaps/hot
  32. share/h5utils/colormaps/hsv
  33. share/h5utils/colormaps/inferno
  34. share/h5utils/colormaps/jet
  35. share/h5utils/colormaps/lines
  36. share/h5utils/colormaps/pink
  37. share/h5utils/colormaps/prism
  38. share/h5utils/colormaps/spring
  39. share/h5utils/colormaps/summer
  40. share/h5utils/colormaps/vga
  41. share/h5utils/colormaps/viridis
  42. share/h5utils/colormaps/winter
  43. share/h5utils/colormaps/yarg
  44. share/h5utils/colormaps/yellow
  45. @owner
  46. @group
  47. @mode
Collapse this list.
Dependency lines:
  • h5utils>0:science/h5utils
To install the port:
cd /usr/ports/science/h5utils/ && make install clean
To add the package, run one of these commands:
  • pkg install science/h5utils
  • pkg install h5utils
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: h5utils
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1673942285 SHA256 (h5utils-1.13.2.tar.gz) = eea7855a8235facb7c454e61103098e55658da0ddf4b6de5b82a992e5f024351 SIZE (h5utils-1.13.2.tar.gz) = 174406

Packages (timestamps in pop-ups are UTC):
h5utils
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-1.13.2_31.13.1_5-1.13.2_3-1.13.1_5-
FreeBSD:13:quarterly-1.13.2_2--1.13.2_2-1.13.2_21.13.2_2
FreeBSD:14:latest-1.13.2_3------
FreeBSD:14:quarterly-1.13.2_2----1.13.2_21.13.2_2
FreeBSD:15:latest-1.13.2_3n/a-n/a-1.13.2_31.13.2_3
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gawk : lang/gawk
  2. autoconf>=2.71 : devel/autoconf
  3. automake>=1.16.5 : devel/automake
Library dependencies:
  1. libdf.so : science/hdf
  2. libhdf5.so : science/hdf5
  3. libmatheval.so : devel/libmatheval
  4. libpng.so : graphics/png
  5. libjpeg.so : graphics/jpeg-turbo
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for h5utils-1.13.2_3: OCTAVE=off: With Octave support ===> Use 'make config' to modify these settings
Options name:
science_h5utils
USES:
autoreconf compiler:c++11-lang jpeg localbase
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://github.com/NanoComp/h5utils/releases/download/1.13.2/
Collapse this list.

Number of commits found: 35

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.13.2_3
27 Jan 2024 10:52:26
commit hash: 7aae4b51367e0007a539342b08413cb04ab3a91ccommit hash: 7aae4b51367e0007a539342b08413cb04ab3a91ccommit hash: 7aae4b51367e0007a539342b08413cb04ab3a91ccommit hash: 7aae4b51367e0007a539342b08413cb04ab3a91c files touched by this commit
Gleb Popov (arrowd) search for other commits by this committer
Author: Nuno Teixeira
*: Autotools manpages fix

Approved by:	portmgr (blanket)
1.13.2_2
28 Jul 2023 17:13:17
commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3fcommit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f files touched by this commit
Daniel Engberg (diizzy) search for other commits by this committer
*/*: Bump jpeg-turbo users treewide

New major version 3.0.0
1.13.2_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.13.2
17 Jan 2023 11:04:48
commit hash: fb4ef23dde674dfc28770f606318e72064ccd00acommit hash: fb4ef23dde674dfc28770f606318e72064ccd00acommit hash: fb4ef23dde674dfc28770f606318e72064ccd00acommit hash: fb4ef23dde674dfc28770f606318e72064ccd00a files touched by this commit
Nuno Teixeira (eduardo) search for other commits by this committer
science/h5utils: Adopt/Update to 1.13.2

- Switch to MASTER_SITES
- Add missing lib dependencies (graphics/jpeg-turbo and science/hdf) to
  build bin/h4fromh5 and bin/h5fromh4 binaries
- Use USES+= localbase
- Update new home url

ChangeLog: https://github.com/NanoComp/h5utils/releases/tag/1.13.2
1.13.1_6
30 Dec 2022 19:00:08
commit hash: ad0afe0769e845486e267fdb5d21fccf23535215commit hash: ad0afe0769e845486e267fdb5d21fccf23535215commit hash: ad0afe0769e845486e267fdb5d21fccf23535215commit hash: ad0afe0769e845486e267fdb5d21fccf23535215 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
science/*: Fix USES=octave for some ports

In my previous commits of USES=octave conversion I missed two ports in
science category. Fix those to use USES=octave:env.

Approved by:	portmgr (blanket infrastructure)
1.13.1_6
22 Nov 2022 06:48:02
commit hash: 6a105a956401a8fc48afa64a0e79a552d7dd7dcacommit hash: 6a105a956401a8fc48afa64a0e79a552d7dd7dcacommit hash: 6a105a956401a8fc48afa64a0e79a552d7dd7dcacommit hash: 6a105a956401a8fc48afa64a0e79a552d7dd7dca files touched by this commit
Fernando Apesteguía (fernape) search for other commits by this committer
*/*: Reset Maintainership

As per maintainer's request.

Reported in mail list[1]

[1] https://www.mail-archive.com/ports@freebsd.org/msg02842.html
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.13.1_6
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.13.1_6
20 Jul 2022 14:35:24
commit hash: 5564b3b420db29745d2d4981d1963200ddf53e35commit hash: 5564b3b420db29745d2d4981d1963200ddf53e35commit hash: 5564b3b420db29745d2d4981d1963200ddf53e35commit hash: 5564b3b420db29745d2d4981d1963200ddf53e35 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>
1.13.1_5
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.13.1_5
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.13.1_5
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.13.1_4
05 Jan 2019 22:46:54
Revision:489412Original commit files touched by this commit
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen
1.13.1_3
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.13.1_2
05 Sep 2018 22:05:23
Revision:479046Original commit files touched by this commit
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine
1.13.1_1
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
1.13.1
22 Mar 2018 04:45:38
Revision:465256Original commit files touched by this commit
yuri search for other commits by this committer
science/h5utils: Update to 1.13.1

Port changes:
* Change to DISTVERSION
* Add USES=compiler:c++11-lang and CXXFLAGS+=-std=c++11
* Remove duplicate GNU_CONFIGURE and unnecessary +=
* Add the option OCTAVE for Octave integration

PR:		226815
Submitted by:	Klaus Aehlig <aehlig@linta.de> (maintainer) - sumbitted w/out the
OCTAVE option
1.13
11 Jan 2018 16:53:45
Revision:458755Original commit files touched by this commit
danfe search for other commits by this committer
Remove superfluous linefeeds and fix some other minor whitespace bugs.
1.13
26 Jul 2017 13:42:01
Revision:446657Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.13
- Update WWW

PR:		220994
Submitted by:	aehlig@linta.de(maintainer)
1.12.1_7
30 May 2017 02:56:44
Revision:442050Original commit files touched by this commit
sunpoet search for other commits by this committer
Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
1.12.1_6
19 May 2016 10:53:06
Revision:415500Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [p-x]*

Approved by:	portmgr blanket
1.12.1_6
20 Apr 2016 20:42:40
Revision:413700Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
1.12.1_5
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
1.12.1_5
24 May 2015 08:10:29
Revision:387255Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
1.12.1_4
24 Mar 2015 22:17:42
Revision:382185Original commit files touched by this commit
marino search for other commits by this committer
3 ports categories: Remove $PTHREAD_LIBS

Categories: print, science, emulators

approved by:	PTHREAD blanket
1.12.1_4
18 Jan 2015 10:39:51
Revision:377318Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
1.12.1_3
25 Dec 2014 20:54:43
Revision:375598Original commit files touched by this commit
bapt search for other commits by this committer
Bump portrevision after png update
1.12.1_2
24 Dec 2014 16:17:20
Revision:375470Original commit files touched by this commit
antoine search for other commits by this committer
Properly support png 1.5

Obtained from:	pkgsrc
1.12.1_2
12 Nov 2014 18:48:53
Revision:372500Original commit files touched by this commit
antoine search for other commits by this committer
Cleanup plist
1.12.1_2
17 Jul 2014 08:57:51
Revision:362126Original commit files touched by this commit
olgeni search for other commits by this committer
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. A few Makefiles
where not included as they contain Latin-1 characters that break
the Phabricator workflow. Categories P-S.

CR:		D422
Approved by:	portmgr (bapt)
1.12.1_2
19 May 2014 07:50:17
Revision:354509Original commit files touched by this commit
culot search for other commits by this committer
- Support staging

PR:		ports/189617
Submitted by:	Klaus Aehlig <aehlig@linta.de> (maintainer)
1.12.1_2
03 May 2014 00:55:30
Revision:352854Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]
1.12.1_1
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
1.12.1_1
01 Jun 2012 05:26:28
Original commit files touched by this commit
dinoex search for other commits by this committer
- update png to 1.5.10
1.12.1
18 Mar 2011 19:42:35
Original commit files touched by this commit
swills search for other commits by this committer
h5utils is a set of utilities for visualization and conversion of
scientific data in the free, portable HDF5 format.

Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).

WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils

PR:             ports/155482
Submitted by:   Klaus Aehlig <aehlig at linta.de>

Number of commits found: 35