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Port details
massxpert massXpert software for (bio)chemists
3.4.0_9 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: vg@FreeBSD.org search for ports maintained by this maintainer
Port Added: 20 May 2010 09:43:44
License: GPLv3
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

WWW: http://massxpert.tuxfamily.org/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (216 items)
  1. /usr/local/share/licenses/massxpert-3.4.0_9/catalog.mk
  2. /usr/local/share/licenses/massxpert-3.4.0_9/LICENSE
  3. /usr/local/share/licenses/massxpert-3.4.0_9/GPLv3
  4. bin/massxpert
  5. lib/massxpert/plugins/libmassListSorterPlugin.so
  6. lib/massxpert/plugins/libseqToolsPlugin.so
  7. lib/massxpert/plugins/libnumeralsLocaleConverterPlugin.so
  8. man/man1/massxpert.1.gz
  9. man/man7/massxpert-data.7.gz
  10. share/doc/massxpert/COPYING
  11. share/applications/massxpert.desktop
  12. share/massxpert/locales/massxpert_fr.qm
  13. share/massxpert/pol-chem-defs/dna/adenine.svg
  14. share/massxpert/pol-chem-defs/dna/biotlink.svg
  15. share/massxpert/pol-chem-defs/dna/chem_pad.conf
  16. share/massxpert/pol-chem-defs/dna/cross_linker_dictionary
  17. share/massxpert/pol-chem-defs/dna/cursor.svg
  18. share/massxpert/pol-chem-defs/dna/cytosine.svg
  19. share/massxpert/pol-chem-defs/dna/default-cross-link-vignette.svg
  20. share/massxpert/pol-chem-defs/dna/default-modif-vignette.svg
  21. share/massxpert/pol-chem-defs/dna/diphospho.svg
  22. share/massxpert/pol-chem-defs/dna/dna.xml
  23. share/massxpert/pol-chem-defs/dna/guanine.svg
  24. share/massxpert/pol-chem-defs/dna/methyl.svg
  25. share/massxpert/pol-chem-defs/dna/modification_dictionary
  26. share/massxpert/pol-chem-defs/dna/monomer_dictionary
  27. share/massxpert/pol-chem-defs/dna/oxidation.svg
  28. share/massxpert/pol-chem-defs/dna/phospho.svg
  29. share/massxpert/pol-chem-defs/dna/ps-adenine.svg
  30. share/massxpert/pol-chem-defs/dna/ps-cytosine.svg
  31. share/massxpert/pol-chem-defs/dna/ps-guanine.svg
  32. share/massxpert/pol-chem-defs/dna/ps-thymine.svg
  33. share/massxpert/pol-chem-defs/dna/thymine-dimer.svg
  34. share/massxpert/pol-chem-defs/dna/thymine.svg
  35. share/massxpert/pol-chem-defs/dna/uracile.svg
  36. share/massxpert/pol-chem-defs/massxpert-pol-chem-defs-cat
  37. share/massxpert/pol-chem-defs/nucac/biotlink.svg
  38. share/massxpert/pol-chem-defs/nucac/chem_pad.conf
  39. share/massxpert/pol-chem-defs/nucac/cross_linker_dictionary
  40. share/massxpert/pol-chem-defs/nucac/cursor.svg
  41. share/massxpert/pol-chem-defs/nucac/dadenine.svg
  42. share/massxpert/pol-chem-defs/nucac/dcytosine.svg
  43. share/massxpert/pol-chem-defs/nucac/default-cross-link-vignette.svg
  44. share/massxpert/pol-chem-defs/nucac/default-modif-vignette.svg
  45. share/massxpert/pol-chem-defs/nucac/dguanine.svg
  46. share/massxpert/pol-chem-defs/nucac/diphospho.svg
  47. share/massxpert/pol-chem-defs/nucac/dthymine.svg
  48. share/massxpert/pol-chem-defs/nucac/methyl.svg
  49. share/massxpert/pol-chem-defs/nucac/modification_dictionary
  50. share/massxpert/pol-chem-defs/nucac/monomer_dictionary
  51. share/massxpert/pol-chem-defs/nucac/nucac.xml
  52. share/massxpert/pol-chem-defs/nucac/oxidation.svg
  53. share/massxpert/pol-chem-defs/nucac/phospho.svg
  54. share/massxpert/pol-chem-defs/nucac/ps-dadenine.svg
  55. share/massxpert/pol-chem-defs/nucac/ps-dguanine.svg
  56. share/massxpert/pol-chem-defs/nucac/ps-dcytosine.svg
  57. share/massxpert/pol-chem-defs/nucac/ps-dthymine.svg
  58. share/massxpert/pol-chem-defs/nucac/ps-radenine.svg
  59. share/massxpert/pol-chem-defs/nucac/ps-rcytosine.svg
  60. share/massxpert/pol-chem-defs/nucac/ps-rguanine.svg
  61. share/massxpert/pol-chem-defs/nucac/ps-ruracile.svg
  62. share/massxpert/pol-chem-defs/nucac/radenine.svg
  63. share/massxpert/pol-chem-defs/nucac/rcytosine.svg
  64. share/massxpert/pol-chem-defs/nucac/rguanine.svg
  65. share/massxpert/pol-chem-defs/nucac/ruracile.svg
  66. share/massxpert/pol-chem-defs/nucac/thymine-dimer.svg
  67. share/massxpert/pol-chem-defs/protein-1-letter/acetyl.svg
  68. share/massxpert/pol-chem-defs/protein-1-letter/alanine.svg
  69. share/massxpert/pol-chem-defs/protein-1-letter/arginine.svg
  70. share/massxpert/pol-chem-defs/protein-1-letter/asparagine.svg
  71. share/massxpert/pol-chem-defs/protein-1-letter/aspartate.svg
  72. share/massxpert/pol-chem-defs/protein-1-letter/cfp-chromophore.svg
  73. share/massxpert/pol-chem-defs/protein-1-letter/chem_pad.conf
  74. share/massxpert/pol-chem-defs/protein-1-letter/cross_linker_dictionary
  75. share/massxpert/pol-chem-defs/protein-1-letter/cursor.svg
  76. share/massxpert/pol-chem-defs/protein-1-letter/cysteine.svg
  77. share/massxpert/pol-chem-defs/protein-1-letter/default-cross-link-vignette.svg
  78. share/massxpert/pol-chem-defs/protein-1-letter/default-modif-vignette.svg
  79. share/massxpert/pol-chem-defs/protein-1-letter/disulfidebond-cross-link.svg
  80. share/massxpert/pol-chem-defs/protein-1-letter/glutamate.svg
  81. share/massxpert/pol-chem-defs/protein-1-letter/glutamine.svg
  82. share/massxpert/pol-chem-defs/protein-1-letter/glycine.svg
  83. share/massxpert/pol-chem-defs/protein-1-letter/histidine.svg
  84. share/massxpert/pol-chem-defs/protein-1-letter/hydroxylation.svg
  85. share/massxpert/pol-chem-defs/protein-1-letter/isoleucine.svg
  86. share/massxpert/pol-chem-defs/protein-1-letter/leucine.svg
  87. share/massxpert/pol-chem-defs/protein-1-letter/lysine.svg
  88. share/massxpert/pol-chem-defs/protein-1-letter/methionine.svg
  89. share/massxpert/pol-chem-defs/protein-1-letter/modification_dictionary
  90. share/massxpert/pol-chem-defs/protein-1-letter/monomer_dictionary
  91. share/massxpert/pol-chem-defs/protein-1-letter/oxidation.svg
  92. share/massxpert/pol-chem-defs/protein-1-letter/pdb-code-conversion.dic
  93. share/massxpert/pol-chem-defs/protein-1-letter/phenylalanine.svg
  94. share/massxpert/pol-chem-defs/protein-1-letter/phospho.svg
  95. share/massxpert/pol-chem-defs/protein-1-letter/pka_ph_pi.xml
  96. share/massxpert/pol-chem-defs/protein-1-letter/proline.svg
  97. share/massxpert/pol-chem-defs/protein-1-letter/protein-1-letter.xml
  98. share/massxpert/pol-chem-defs/protein-1-letter/protonloss.svg
  99. share/massxpert/pol-chem-defs/protein-1-letter/serine.svg
  100. share/massxpert/pol-chem-defs/protein-1-letter/sulfbond.svg
  101. share/massxpert/pol-chem-defs/protein-1-letter/sulpho.svg
  102. share/massxpert/pol-chem-defs/protein-1-letter/threonine.svg
  103. share/massxpert/pol-chem-defs/protein-1-letter/tryptophan.svg
  104. share/massxpert/pol-chem-defs/protein-1-letter/tyrosine.svg
  105. share/massxpert/pol-chem-defs/protein-1-letter/valine.svg
  106. share/massxpert/pol-chem-defs/protein-3-letters/acetyl.svg
  107. share/massxpert/pol-chem-defs/protein-3-letters/alanine.svg
  108. share/massxpert/pol-chem-defs/protein-3-letters/arginine.svg
  109. share/massxpert/pol-chem-defs/protein-3-letters/asparagine.svg
  110. share/massxpert/pol-chem-defs/protein-3-letters/aspartate.svg
  111. share/massxpert/pol-chem-defs/protein-3-letters/chem_pad.conf
  112. share/massxpert/pol-chem-defs/protein-3-letters/cross_linker_dictionary
  113. share/massxpert/pol-chem-defs/protein-3-letters/cursor.svg
  114. share/massxpert/pol-chem-defs/protein-3-letters/cysteine.svg
  115. share/massxpert/pol-chem-defs/protein-3-letters/default-cross-link-vignette.svg
  116. share/massxpert/pol-chem-defs/protein-3-letters/default-modif-vignette.svg
  117. share/massxpert/pol-chem-defs/protein-3-letters/glutamate.svg
  118. share/massxpert/pol-chem-defs/protein-3-letters/glutamine.svg
  119. share/massxpert/pol-chem-defs/protein-3-letters/glycine.svg
  120. share/massxpert/pol-chem-defs/protein-3-letters/histidine.svg
  121. share/massxpert/pol-chem-defs/protein-3-letters/isoleucine.svg
  122. share/massxpert/pol-chem-defs/protein-3-letters/leucine.svg
  123. share/massxpert/pol-chem-defs/protein-3-letters/lysine.svg
  124. share/massxpert/pol-chem-defs/protein-3-letters/methionine.svg
  125. share/massxpert/pol-chem-defs/protein-3-letters/phospho.svg
  126. share/massxpert/pol-chem-defs/protein-3-letters/modification_dictionary
  127. share/massxpert/pol-chem-defs/protein-3-letters/monomer_dictionary
  128. share/massxpert/pol-chem-defs/protein-3-letters/oxidation.svg
  129. share/massxpert/pol-chem-defs/protein-3-letters/pdb-code-conversion.dic
  130. share/massxpert/pol-chem-defs/protein-3-letters/phenylalanine.svg
  131. share/massxpert/pol-chem-defs/protein-3-letters/proline.svg
  132. share/massxpert/pol-chem-defs/protein-3-letters/protein-3-letters.xml
  133. share/massxpert/pol-chem-defs/protein-3-letters/protonloss.svg
  134. share/massxpert/pol-chem-defs/protein-3-letters/serine.svg
  135. share/massxpert/pol-chem-defs/protein-3-letters/sulfbond.svg
  136. share/massxpert/pol-chem-defs/protein-3-letters/sulpho.svg
  137. share/massxpert/pol-chem-defs/protein-3-letters/threonine.svg
  138. share/massxpert/pol-chem-defs/protein-3-letters/tryptophan.svg
  139. share/massxpert/pol-chem-defs/protein-3-letters/tyrosine.svg
  140. share/massxpert/pol-chem-defs/protein-3-letters/valine.svg
  141. share/massxpert/pol-chem-defs/saccharide/allose-text.svg
  142. share/massxpert/pol-chem-defs/saccharide/allose.svg
  143. share/massxpert/pol-chem-defs/saccharide/altrose-text.svg
  144. share/massxpert/pol-chem-defs/saccharide/altrose.svg
  145. share/massxpert/pol-chem-defs/saccharide/arabinose-text.svg
  146. share/massxpert/pol-chem-defs/saccharide/arabinose.svg
  147. share/massxpert/pol-chem-defs/saccharide/chem_pad.conf
  148. share/massxpert/pol-chem-defs/saccharide/cross_linker_dictionary
  149. share/massxpert/pol-chem-defs/saccharide/cursor.svg
  150. share/massxpert/pol-chem-defs/saccharide/default-cross-link-vignette.svg
  151. share/massxpert/pol-chem-defs/saccharide/default-modif-vignette.svg
  152. share/massxpert/pol-chem-defs/saccharide/erythrose-text.svg
  153. share/massxpert/pol-chem-defs/saccharide/erythrose.svg
  154. share/massxpert/pol-chem-defs/saccharide/erythrulose-text.svg
  155. share/massxpert/pol-chem-defs/saccharide/erythrulose.svg
  156. share/massxpert/pol-chem-defs/saccharide/fructose-text.svg
  157. share/massxpert/pol-chem-defs/saccharide/fructose.svg
  158. share/massxpert/pol-chem-defs/saccharide/galactose-text.svg
  159. share/massxpert/pol-chem-defs/saccharide/galactose.svg
  160. share/massxpert/pol-chem-defs/saccharide/glucose-text.svg
  161. share/massxpert/pol-chem-defs/saccharide/glucose.svg
  162. share/massxpert/pol-chem-defs/saccharide/gulose-text.svg
  163. share/massxpert/pol-chem-defs/saccharide/gulose.svg
  164. share/massxpert/pol-chem-defs/saccharide/idose-text.svg
  165. share/massxpert/pol-chem-defs/saccharide/idose.svg
  166. share/massxpert/pol-chem-defs/saccharide/lyxose-text.svg
  167. share/massxpert/pol-chem-defs/saccharide/lyxose.svg
  168. share/massxpert/pol-chem-defs/saccharide/mannose-text.svg
  169. share/massxpert/pol-chem-defs/saccharide/mannose.svg
  170. share/massxpert/pol-chem-defs/saccharide/methyl.svg
  171. share/massxpert/pol-chem-defs/saccharide/modification_dictionary
  172. share/massxpert/pol-chem-defs/saccharide/monomer_dictionary
  173. share/massxpert/pol-chem-defs/saccharide/psicose-text.svg
  174. share/massxpert/pol-chem-defs/saccharide/psicose.svg
  175. share/massxpert/pol-chem-defs/saccharide/ribose-text.svg
  176. share/massxpert/pol-chem-defs/saccharide/ribose.svg
  177. share/massxpert/pol-chem-defs/saccharide/ribulose-text.svg
  178. share/massxpert/pol-chem-defs/saccharide/ribulose.svg
  179. share/massxpert/pol-chem-defs/saccharide/saccharide.xml
  180. share/massxpert/pol-chem-defs/saccharide/sorbose-text.svg
  181. share/massxpert/pol-chem-defs/saccharide/sorbose.svg
  182. share/massxpert/pol-chem-defs/saccharide/tagatose-text.svg
  183. share/massxpert/pol-chem-defs/saccharide/tagatose.svg
  184. share/massxpert/pol-chem-defs/saccharide/talose-text.svg
  185. share/massxpert/pol-chem-defs/saccharide/talose.svg
  186. share/massxpert/pol-chem-defs/saccharide/template-text.svg
  187. share/massxpert/pol-chem-defs/saccharide/threose-text.svg
  188. share/massxpert/pol-chem-defs/saccharide/threose.svg
  189. share/massxpert/pol-chem-defs/saccharide/xylose-text.svg
  190. share/massxpert/pol-chem-defs/saccharide/xylose.svg
  191. share/massxpert/pol-chem-defs/saccharide/xylulose-text.svg
  192. share/massxpert/pol-chem-defs/saccharide/xylulose.svg
  193. share/massxpert/pol-seqs/17-mer-ps-po-dna-chimera.mxp
  194. share/massxpert/pol-seqs/centrin-2-human.mxp
  195. share/massxpert/pol-seqs/cerulean-histag.mxp
  196. share/massxpert/pol-seqs/chicken-telokin.mxp
  197. share/massxpert/pol-seqs/citrin-fluorescent-protein.mxp
  198. share/massxpert/pol-seqs/cyan-fluorescent-protein-h148d-histag.mxp
  199. share/massxpert/pol-seqs/cyan-fluorescent-protein.mxp
  200. share/massxpert/pol-seqs/horse-myoglobin.mxp
  201. share/massxpert/pol-seqs/kunitz-inhibitor-human.mxp
  202. share/massxpert/pol-seqs/leu-enkephalin.mxp
  203. share/massxpert/pol-seqs/protein-1-letter.mxp
  204. share/massxpert/pol-seqs/protein-3-letters.mxp
  205. share/massxpert/pol-seqs/tev-protease-his-tag.mxp
  206. share/massxpert/pol-seqs/yellow-fluorescent-protein.mxp
  207. share/massxpert/pol-seqs/insulin-a-ox.mxp
  208. share/massxpert/pol-seqs/insulin-b-ox.mxp
  209. share/massxpert/dictionaries/codon-to-protein-1.dic
  210. share/massxpert/dictionaries/codon-to-protein-3.dic
  211. share/massxpert/dictionaries/pdb-protein-to-mxp.dic
  212. share/massxpert/dictionaries/protein-1-to-3.dic
  213. share/massxpert/dictionaries/protein-3-to-1.dic
  214. share/massxpert/chem_pad.conf
  215. @postexec /sbin/ldconfig -m /usr/local/lib
  216. @postunexec /sbin/ldconfig -R
  217. Collapse this list.

To install the port: cd /usr/ports/science/massxpert/ && make install clean
To add the package: pkg install massxpert

PKGNAME: massxpert

distinfo:

SHA256 (massxpert-3.4.0.tar.bz2) = b06314722b4cbdf68dc76e55933a79487848c655fc65341a8dbc707ed89cc9e8
SIZE (massxpert-3.4.0.tar.bz2) = 16544044


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. pthread-stubs.pc : devel/libpthread-stubs
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. msgfmt : devel/gettext-tools
  5. gcc6 : lang/gcc6
  6. as : devel/binutils
  7. ice.pc : x11/libICE
  8. sm.pc : x11/libSM
  9. x11.pc : x11/libX11
  10. xau.pc : x11/libXau
  11. xcb.pc : x11/libxcb
  12. xdmcp.pc : x11/libXdmcp
  13. xext.pc : x11/libXext
  14. xrender.pc : x11/libXrender
  15. moc : devel/qt4-moc
  16. qmake : devel/qt4-qmake
  17. rcc : devel/qt4-rcc
  18. uic : devel/qt4-uic
Runtime dependencies:
  1. gcc6 : lang/gcc6
  2. ice.pc : x11/libICE
  3. sm.pc : x11/libSM
  4. x11.pc : x11/libX11
  5. xau.pc : x11/libXau
  6. xcb.pc : x11/libxcb
  7. xdmcp.pc : x11/libXdmcp
  8. xext.pc : x11/libXext
  9. xrender.pc : x11/libXrender
Library dependencies:
  1. libpcre.so : devel/pcre
  2. libpng.so : graphics/png
  3. libfreetype.so : print/freetype2
  4. libexpat.so : textproc/expat2
  5. libfontconfig.so : x11-fonts/fontconfig
  6. libintl.so : devel/gettext-runtime
  7. libglib-2.0.so : devel/glib20
  8. libintl.so : devel/gettext-runtime
  9. libQtCore.so : devel/qt4-corelib
  10. libQtGui.so : x11-toolkits/qt4-gui
  11. libQtSvg.so : graphics/qt4-svg
  12. libQtXml.so : textproc/qt4-xml
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
cmake gettext tar:bzip2 qmake:_env gnome

Master Sites:
  1. http://download.tuxfamily.org/massxpert/source/

Number of commits found: 32

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 Sep 2017 20:55:39
Original commit files touched by this commit  3.4.0_9
Revision:449591
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
26 Aug 2017 20:55:41
Original commit files touched by this commit  3.4.0_8
Revision:448784
rakuco search for other commits by this committer
Revert r447879.

Apparently the build is indeed broken with parallel jobs, even though I wasn't
able to reproduce it in my tests. Checking what's broken would take time and
anyone interested in that should rather try updating the port to 3.6.0.

PR:		219293
Reported by:	John Marino <freebsdml@marino.st>
13 Aug 2017 11:20:36
Original commit files touched by this commit  3.4.0_8
Revision:447879
rakuco search for other commits by this committer
Drop MAKE_JOBS_UNSAFE.

Tentatively remove it after testing the port with -j2 and -jLOTS_OF_CORES.

PR:		219293
13 Aug 2017 11:19:52
Original commit files touched by this commit  3.4.0_8
Revision:447878
rakuco search for other commits by this committer
Add patch to drop a wrong ';' in an if check.

In addition to fixing an actual bug, this also fixes the build with GCC 6:

/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:
In member function 'bool massXpert::PropListHolder::removeProp(const QString&)':
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:216:2:
error: this 'if' clause does not guard... [-Werror=misleading-indentation]
  if(m_propList.at(iter)->name() == name);
  ^~
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:217:2:
note: ...this statement, but the latter is misleadingly indented as if it is
guarded by the 'if'
  {

PR:		219293
Approved by:	maintainer timeout (vg, 18 days)
MFH:		2017Q3
26 Jul 2017 17:02:15
Original commit files touched by this commit  3.4.0_7
Revision:446665
rakuco search for other commits by this committer
Update WWW.

The massxpert.org domain no longer belongs to the project.
01 Apr 2017 15:23:32
Original commit files touched by this commit  3.4.0_7
Revision:437439
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
29 Mar 2017 06:50:28
Original commit files touched by this commit  3.4.0_6
Revision:437182
ashish search for other commits by this committer
- Update devel/libpthread-stubs to 0.4
- Chase libpthread-stubs update, and also switch to BUILD_DEPENDS
  from LIB_DEPENDS, as port is now only .pc file

PR:		218015
Submitted by:	rezny
20 Nov 2016 09:38:09
Original commit files touched by this commit  3.4.0_5
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
01 Apr 2016 14:25:18
Original commit files touched by this commit  3.4.0_4
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
11 Sep 2015 09:43:08
Original commit files touched by this commit  3.4.0_4
Revision:396655
rakuco search for other commits by this committer
Drop USES=iconv.

The port's source does not use iconv anywhere, so remove the unnecessary
dependency from the Makefile.

PR:		202717
Approved by:	maintainer timeout (vg, 14 days)
22 Mar 2015 00:06:35
Original commit files touched by this commit  3.4.0_3
Revision:381882
marino search for other commits by this committer
science/massxpert: Fix two logical errors (found by gcc5)

There were two boolean logic issues found by gcc5 when compiling
massxpert.  One was comparing boolean output to a negative integer
(is always false) and the other applied the "not" operator in the wrong
place.  Fix provided per request by maintainer.

PR:	197823
25 Dec 2014 20:54:43
Original commit files touched by this commit  3.4.0_2
Revision:375598
bapt search for other commits by this committer
Bump portrevision after png update
25 Dec 2014 19:04:27
Original commit files touched by this commit  3.4.0_1
Revision:375594
antoine search for other commits by this committer
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade
12 Nov 2014 18:48:53
Original commit files touched by this commit  3.4.0_1
Revision:372500
antoine search for other commits by this committer
Cleanup plist
30 Jun 2014 20:39:00
Original commit files touched by this commit  3.4.0_1
Revision:359917
vg search for other commits by this committer
- Support staging.
16 Apr 2014 18:28:50
Original commit files touched by this commit  3.4.0_1
Revision:351411
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Oct 2013 14:01:39
Original commit files touched by this commit  3.4.0
Revision:331274
amdmi3 search for other commits by this committer
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)
20 Sep 2013 22:48:31
Original commit files touched by this commit  3.4.0
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
22 Jul 2013 14:34:23
Original commit files touched by this commit  3.4.0
Revision:323455
vg search for other commits by this committer
 - Changed my email
 - Trim Makefile headers and positions name and surname within

Approved by:	eadler, rm (mentors)
25 May 2013 14:37:03
Original commit files touched by this commit  3.4.0
Revision:319055
zeising search for other commits by this committer
The FreeBSD x11 team proudly presents
an zeising, kwm, miwi, bapt, eadler production:

Xorg 7.7

Starring:
xserver 1.12.4 (new xorg only)
Mesa 8.0.4, including libGL, libGLU and dri (new xorg only)
libX11 1.5.0
libxcb 1.9
libdrm 2.4.42 (new xorg only)
freeglut 2.8.1
Also starring:
Updates to drivers and other libraries and utilities
(Only the first 15 lines of the commit message are shown above View all of this commit message)
27 Apr 2013 18:25:25
Original commit files touched by this commit  3.4.0
Revision:316683
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
24 Apr 2013 07:35:41
Original commit files touched by this commit  3.4.0
Revision:316407
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
22 Mar 2013 20:06:15
Original commit files touched by this commit  3.4.0
Revision:314960
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
09 Feb 2013 14:02:02
Original commit files touched by this commit  3.4.0
Revision:311977
miwi search for other commits by this committer
- Update to 3.4.0

PR:		175601
Submitted by:	maintainer
16 Dec 2012 20:59:40
Original commit files touched by this commit  3.3.0
Revision:309044
pawel search for other commits by this committer
- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line

PR:		ports/174397 [1]
Submitted by:	Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
06 Jun 2012 06:44:38
Original commit files touched by this commit  3.1.0_1
miwi search for other commits by this committer
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)
01 Jun 2012 05:26:28
Original commit files touched by this commit  3.1.0_1
dinoex search for other commits by this committer
- update png to 1.5.10
14 Nov 2011 03:26:46
Original commit files touched by this commit  3.1.0
rakuco search for other commits by this committer
Remove CMAKE_USE_PTHREAD from the ports using it.

This setting has not had any effect since r1.13 to bsd.cmake.mk, as it
was only useful when we supported FreeBSD < 7.

Approved by:    avilla (mentor), portmgr (miwi)
Feature safe:   yes
06 Sep 2011 16:03:47
Original commit files touched by this commit  3.1.0
dhn search for other commits by this committer
- Update to 3.1.0

PR:             ports/160515
Submitted by:   Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
31 Mar 2011 06:51:37
Original commit files touched by this commit  2.4.3
culot search for other commits by this committer
- Update to 2.4.3
- LICENSE added

PR:             ports/156059
Submitted by:   Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
27 May 2010 06:07:41
Original commit files touched by this commit  2.3.6_1
wen search for other commits by this committer
- Fix mans
- Remove USE_LDCONFIG

PR:             ports/146795
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
20 May 2010 09:43:14
Original commit files touched by this commit  2.3.6
wen search for other commits by this committer
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:             ports/146564
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com>

Number of commits found: 32

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