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Port details
massxpert Software suite for (bio)chemists
3.6.1_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 3.6.1_1Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
search for ports maintained by this maintainer
Port Added: 2010-05-20 09:43:44
Last Update: 2020-05-28 09:43:30
SVN Revision: 536752
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (214 items)
  1. @ldconfig
  2. /usr/local/share/licenses/massxpert-3.6.1_1/catalog.mk
  3. /usr/local/share/licenses/massxpert-3.6.1_1/LICENSE
  4. /usr/local/share/licenses/massxpert-3.6.1_1/GPLv3
  5. bin/massxpert
  6. man/man1/massxpert.1.gz
  7. man/man7/massxpert-data.7.gz
  8. share/applications/massxpert.desktop
  9. share/massxpert/chem_pad.conf
  10. share/massxpert/dictionaries/codon-to-protein-1.dic
  11. share/massxpert/dictionaries/codon-to-protein-3.dic
  12. share/massxpert/dictionaries/pdb-protein-to-mxp.dic
  13. share/massxpert/dictionaries/protein-1-to-3.dic
  14. share/massxpert/dictionaries/protein-3-to-1.dic
  15. share/massxpert/locales/massxpert_fr.qm
  16. share/massxpert/pol-chem-defs/dna/adenine.svg
  17. share/massxpert/pol-chem-defs/dna/biotlink.svg
  18. share/massxpert/pol-chem-defs/dna/chem_pad.conf
  19. share/massxpert/pol-chem-defs/dna/cross_linker_dictionary
  20. share/massxpert/pol-chem-defs/dna/cursor.svg
  21. share/massxpert/pol-chem-defs/dna/cytosine.svg
  22. share/massxpert/pol-chem-defs/dna/default-cross-link-vignette.svg
  23. share/massxpert/pol-chem-defs/dna/default-modif-vignette.svg
  24. share/massxpert/pol-chem-defs/dna/diphospho.svg
  25. share/massxpert/pol-chem-defs/dna/dna.xml
  26. share/massxpert/pol-chem-defs/dna/guanine.svg
  27. share/massxpert/pol-chem-defs/dna/methyl.svg
  28. share/massxpert/pol-chem-defs/dna/modification_dictionary
  29. share/massxpert/pol-chem-defs/dna/monomer_dictionary
  30. share/massxpert/pol-chem-defs/dna/oxidation.svg
  31. share/massxpert/pol-chem-defs/dna/phospho.svg
  32. share/massxpert/pol-chem-defs/dna/ps-adenine.svg
  33. share/massxpert/pol-chem-defs/dna/ps-cytosine.svg
  34. share/massxpert/pol-chem-defs/dna/ps-guanine.svg
  35. share/massxpert/pol-chem-defs/dna/ps-thymine.svg
  36. share/massxpert/pol-chem-defs/dna/thymine-dimer.svg
  37. share/massxpert/pol-chem-defs/dna/thymine.svg
  38. share/massxpert/pol-chem-defs/dna/uracile.svg
  39. share/massxpert/pol-chem-defs/massxpert-pol-chem-defs-cat
  40. share/massxpert/pol-chem-defs/nucac/biotlink.svg
  41. share/massxpert/pol-chem-defs/nucac/chem_pad.conf
  42. share/massxpert/pol-chem-defs/nucac/cross_linker_dictionary
  43. share/massxpert/pol-chem-defs/nucac/cursor.svg
  44. share/massxpert/pol-chem-defs/nucac/dadenine.svg
  45. share/massxpert/pol-chem-defs/nucac/dcytosine.svg
  46. share/massxpert/pol-chem-defs/nucac/default-cross-link-vignette.svg
  47. share/massxpert/pol-chem-defs/nucac/default-modif-vignette.svg
  48. share/massxpert/pol-chem-defs/nucac/dguanine.svg
  49. share/massxpert/pol-chem-defs/nucac/diphospho.svg
  50. share/massxpert/pol-chem-defs/nucac/dthymine.svg
  51. share/massxpert/pol-chem-defs/nucac/methyl.svg
  52. share/massxpert/pol-chem-defs/nucac/modification_dictionary
  53. share/massxpert/pol-chem-defs/nucac/monomer_dictionary
  54. share/massxpert/pol-chem-defs/nucac/nucac.xml
  55. share/massxpert/pol-chem-defs/nucac/oxidation.svg
  56. share/massxpert/pol-chem-defs/nucac/phospho.svg
  57. share/massxpert/pol-chem-defs/nucac/ps-dadenine.svg
  58. share/massxpert/pol-chem-defs/nucac/ps-dcytosine.svg
  59. share/massxpert/pol-chem-defs/nucac/ps-dguanine.svg
  60. share/massxpert/pol-chem-defs/nucac/ps-dthymine.svg
  61. share/massxpert/pol-chem-defs/nucac/ps-radenine.svg
  62. share/massxpert/pol-chem-defs/nucac/ps-rcytosine.svg
  63. share/massxpert/pol-chem-defs/nucac/ps-rguanine.svg
  64. share/massxpert/pol-chem-defs/nucac/ps-ruracile.svg
  65. share/massxpert/pol-chem-defs/nucac/radenine.svg
  66. share/massxpert/pol-chem-defs/nucac/rcytosine.svg
  67. share/massxpert/pol-chem-defs/nucac/rguanine.svg
  68. share/massxpert/pol-chem-defs/nucac/ruracile.svg
  69. share/massxpert/pol-chem-defs/nucac/thymine-dimer.svg
  70. share/massxpert/pol-chem-defs/protein-1-letter/acetyl.svg
  71. share/massxpert/pol-chem-defs/protein-1-letter/alanine.svg
  72. share/massxpert/pol-chem-defs/protein-1-letter/arginine.svg
  73. share/massxpert/pol-chem-defs/protein-1-letter/asparagine.svg
  74. share/massxpert/pol-chem-defs/protein-1-letter/aspartate.svg
  75. share/massxpert/pol-chem-defs/protein-1-letter/cfp-chromophore.svg
  76. share/massxpert/pol-chem-defs/protein-1-letter/chem_pad.conf
  77. share/massxpert/pol-chem-defs/protein-1-letter/cross_linker_dictionary
  78. share/massxpert/pol-chem-defs/protein-1-letter/cursor.svg
  79. share/massxpert/pol-chem-defs/protein-1-letter/cysteine.svg
  80. share/massxpert/pol-chem-defs/protein-1-letter/default-cross-link-vignette.svg
  81. share/massxpert/pol-chem-defs/protein-1-letter/default-modif-vignette.svg
  82. share/massxpert/pol-chem-defs/protein-1-letter/disulfidebond-cross-link.svg
  83. share/massxpert/pol-chem-defs/protein-1-letter/glutamate.svg
  84. share/massxpert/pol-chem-defs/protein-1-letter/glutamine.svg
  85. share/massxpert/pol-chem-defs/protein-1-letter/glutamylation.svg
  86. share/massxpert/pol-chem-defs/protein-1-letter/glycine.svg
  87. share/massxpert/pol-chem-defs/protein-1-letter/glycylation.svg
  88. share/massxpert/pol-chem-defs/protein-1-letter/histidine.svg
  89. share/massxpert/pol-chem-defs/protein-1-letter/hydroxylation.svg
  90. share/massxpert/pol-chem-defs/protein-1-letter/isoleucine.svg
  91. share/massxpert/pol-chem-defs/protein-1-letter/leucine.svg
  92. share/massxpert/pol-chem-defs/protein-1-letter/lysine.svg
  93. share/massxpert/pol-chem-defs/protein-1-letter/methionine.svg
  94. share/massxpert/pol-chem-defs/protein-1-letter/modification_dictionary
  95. share/massxpert/pol-chem-defs/protein-1-letter/monomer_dictionary
  96. share/massxpert/pol-chem-defs/protein-1-letter/oxidation.svg
  97. share/massxpert/pol-chem-defs/protein-1-letter/pdb-code-conversion.dic
  98. share/massxpert/pol-chem-defs/protein-1-letter/phenylalanine.svg
  99. share/massxpert/pol-chem-defs/protein-1-letter/phospho.svg
  100. share/massxpert/pol-chem-defs/protein-1-letter/pka_ph_pi.xml
  101. share/massxpert/pol-chem-defs/protein-1-letter/proline.svg
  102. share/massxpert/pol-chem-defs/protein-1-letter/protein-1-letter.xml
  103. share/massxpert/pol-chem-defs/protein-1-letter/protonloss.svg
  104. share/massxpert/pol-chem-defs/protein-1-letter/serine.svg
  105. share/massxpert/pol-chem-defs/protein-1-letter/sulfbond.svg
  106. share/massxpert/pol-chem-defs/protein-1-letter/sulpho.svg
  107. share/massxpert/pol-chem-defs/protein-1-letter/threonine.svg
  108. share/massxpert/pol-chem-defs/protein-1-letter/tryptophan.svg
  109. share/massxpert/pol-chem-defs/protein-1-letter/tyrosine.svg
  110. share/massxpert/pol-chem-defs/protein-1-letter/valine.svg
  111. share/massxpert/pol-chem-defs/protein-3-letters/acetyl.svg
  112. share/massxpert/pol-chem-defs/protein-3-letters/alanine.svg
  113. share/massxpert/pol-chem-defs/protein-3-letters/arginine.svg
  114. share/massxpert/pol-chem-defs/protein-3-letters/asparagine.svg
  115. share/massxpert/pol-chem-defs/protein-3-letters/aspartate.svg
  116. share/massxpert/pol-chem-defs/protein-3-letters/chem_pad.conf
  117. share/massxpert/pol-chem-defs/protein-3-letters/cross_linker_dictionary
  118. share/massxpert/pol-chem-defs/protein-3-letters/cursor.svg
  119. share/massxpert/pol-chem-defs/protein-3-letters/cysteine.svg
  120. share/massxpert/pol-chem-defs/protein-3-letters/default-cross-link-vignette.svg
  121. share/massxpert/pol-chem-defs/protein-3-letters/default-modif-vignette.svg
  122. share/massxpert/pol-chem-defs/protein-3-letters/glutamate.svg
  123. share/massxpert/pol-chem-defs/protein-3-letters/glutamine.svg
  124. share/massxpert/pol-chem-defs/protein-3-letters/glycine.svg
  125. share/massxpert/pol-chem-defs/protein-3-letters/histidine.svg
  126. share/massxpert/pol-chem-defs/protein-3-letters/isoleucine.svg
  127. share/massxpert/pol-chem-defs/protein-3-letters/leucine.svg
  128. share/massxpert/pol-chem-defs/protein-3-letters/lysine.svg
  129. share/massxpert/pol-chem-defs/protein-3-letters/methionine.svg
  130. share/massxpert/pol-chem-defs/protein-3-letters/modification_dictionary
  131. share/massxpert/pol-chem-defs/protein-3-letters/monomer_dictionary
  132. share/massxpert/pol-chem-defs/protein-3-letters/oxidation.svg
  133. share/massxpert/pol-chem-defs/protein-3-letters/pdb-code-conversion.dic
  134. share/massxpert/pol-chem-defs/protein-3-letters/phenylalanine.svg
  135. share/massxpert/pol-chem-defs/protein-3-letters/phospho.svg
  136. share/massxpert/pol-chem-defs/protein-3-letters/proline.svg
  137. share/massxpert/pol-chem-defs/protein-3-letters/protein-3-letters.xml
  138. share/massxpert/pol-chem-defs/protein-3-letters/protonloss.svg
  139. share/massxpert/pol-chem-defs/protein-3-letters/serine.svg
  140. share/massxpert/pol-chem-defs/protein-3-letters/sulfbond.svg
  141. share/massxpert/pol-chem-defs/protein-3-letters/sulpho.svg
  142. share/massxpert/pol-chem-defs/protein-3-letters/threonine.svg
  143. share/massxpert/pol-chem-defs/protein-3-letters/tryptophan.svg
  144. share/massxpert/pol-chem-defs/protein-3-letters/tyrosine.svg
  145. share/massxpert/pol-chem-defs/protein-3-letters/valine.svg
  146. share/massxpert/pol-chem-defs/saccharide/allose-text.svg
  147. share/massxpert/pol-chem-defs/saccharide/allose.svg
  148. share/massxpert/pol-chem-defs/saccharide/altrose-text.svg
  149. share/massxpert/pol-chem-defs/saccharide/altrose.svg
  150. share/massxpert/pol-chem-defs/saccharide/arabinose-text.svg
  151. share/massxpert/pol-chem-defs/saccharide/arabinose.svg
  152. share/massxpert/pol-chem-defs/saccharide/chem_pad.conf
  153. share/massxpert/pol-chem-defs/saccharide/cross_linker_dictionary
  154. share/massxpert/pol-chem-defs/saccharide/cursor.svg
  155. share/massxpert/pol-chem-defs/saccharide/default-cross-link-vignette.svg
  156. share/massxpert/pol-chem-defs/saccharide/default-modif-vignette.svg
  157. share/massxpert/pol-chem-defs/saccharide/erythrose-text.svg
  158. share/massxpert/pol-chem-defs/saccharide/erythrose.svg
  159. share/massxpert/pol-chem-defs/saccharide/erythrulose-text.svg
  160. share/massxpert/pol-chem-defs/saccharide/erythrulose.svg
  161. share/massxpert/pol-chem-defs/saccharide/fructose-text.svg
  162. share/massxpert/pol-chem-defs/saccharide/fructose.svg
  163. share/massxpert/pol-chem-defs/saccharide/galactose-text.svg
  164. share/massxpert/pol-chem-defs/saccharide/galactose.svg
  165. share/massxpert/pol-chem-defs/saccharide/glucose-text.svg
  166. share/massxpert/pol-chem-defs/saccharide/glucose.svg
  167. share/massxpert/pol-chem-defs/saccharide/gulose-text.svg
  168. share/massxpert/pol-chem-defs/saccharide/gulose.svg
  169. share/massxpert/pol-chem-defs/saccharide/idose-text.svg
  170. share/massxpert/pol-chem-defs/saccharide/idose.svg
  171. share/massxpert/pol-chem-defs/saccharide/lyxose-text.svg
  172. share/massxpert/pol-chem-defs/saccharide/lyxose.svg
  173. share/massxpert/pol-chem-defs/saccharide/mannose-text.svg
  174. share/massxpert/pol-chem-defs/saccharide/mannose.svg
  175. share/massxpert/pol-chem-defs/saccharide/methyl.svg
  176. share/massxpert/pol-chem-defs/saccharide/modification_dictionary
  177. share/massxpert/pol-chem-defs/saccharide/monomer_dictionary
  178. share/massxpert/pol-chem-defs/saccharide/psicose-text.svg
  179. share/massxpert/pol-chem-defs/saccharide/psicose.svg
  180. share/massxpert/pol-chem-defs/saccharide/ribose-text.svg
  181. share/massxpert/pol-chem-defs/saccharide/ribose.svg
  182. share/massxpert/pol-chem-defs/saccharide/ribulose-text.svg
  183. share/massxpert/pol-chem-defs/saccharide/ribulose.svg
  184. share/massxpert/pol-chem-defs/saccharide/saccharide.xml
  185. share/massxpert/pol-chem-defs/saccharide/sorbose-text.svg
  186. share/massxpert/pol-chem-defs/saccharide/sorbose.svg
  187. share/massxpert/pol-chem-defs/saccharide/tagatose-text.svg
  188. share/massxpert/pol-chem-defs/saccharide/tagatose.svg
  189. share/massxpert/pol-chem-defs/saccharide/talose-text.svg
  190. share/massxpert/pol-chem-defs/saccharide/talose.svg
  191. share/massxpert/pol-chem-defs/saccharide/template-text.svg
  192. share/massxpert/pol-chem-defs/saccharide/threose-text.svg
  193. share/massxpert/pol-chem-defs/saccharide/threose.svg
  194. share/massxpert/pol-chem-defs/saccharide/xylose-text.svg
  195. share/massxpert/pol-chem-defs/saccharide/xylose.svg
  196. share/massxpert/pol-chem-defs/saccharide/xylulose-text.svg
  197. share/massxpert/pol-chem-defs/saccharide/xylulose.svg
  198. share/massxpert/pol-seqs/17-mer-ps-po-dna-chimera.mxp
  199. share/massxpert/pol-seqs/beta-2-tubulin.mxp
  200. share/massxpert/pol-seqs/centrin-2-human.mxp
  201. share/massxpert/pol-seqs/cerulean-histag.mxp
  202. share/massxpert/pol-seqs/chicken-telokin.mxp
  203. share/massxpert/pol-seqs/citrin-fluorescent-protein.mxp
  204. share/massxpert/pol-seqs/cyan-fluorescent-protein-h148d-histag.mxp
  205. share/massxpert/pol-seqs/cyan-fluorescent-protein.mxp
  206. share/massxpert/pol-seqs/horse-myoglobin.mxp
  207. share/massxpert/pol-seqs/insulin-a-ox.mxp
  208. share/massxpert/pol-seqs/insulin-b-ox.mxp
  209. share/massxpert/pol-seqs/kunitz-inhibitor-human.mxp
  210. share/massxpert/pol-seqs/leu-enkephalin.mxp
  211. share/massxpert/pol-seqs/protein-1-letter.mxp
  212. share/massxpert/pol-seqs/protein-3-letters.mxp
  213. share/massxpert/pol-seqs/tev-protease-his-tag.mxp
  214. share/massxpert/pol-seqs/yellow-fluorescent-protein.mxp
Collapse this list.
Dependency lines:
  • massxpert>0:science/massxpert
To install the port: cd /usr/ports/science/massxpert/ && make install clean
To add the package: pkg install massxpert
PKGNAME: massxpert
Flavors: there is no flavor information for this port.
distinfo:
Packages:
massxpert
ABIlatestquarterly
FreeBSD:11:aarch643.4.0_113.6.1_1
FreeBSD:11:amd643.6.1_13.6.1_1
FreeBSD:11:armv63.4.0_4-
FreeBSD:11:i386-3.6.1_1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch643.4.0_113.6.1_1
FreeBSD:12:amd643.6.1_13.6.1_1
FreeBSD:12:armv63.4.0_113.6.1_1
FreeBSD:12:armv73.4.0_113.6.1_1
FreeBSD:12:i3863.6.1_13.6.1_1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch643.6.1_1-
FreeBSD:13:amd643.6.1_1-
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3863.6.1_1-
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc643.6.1_1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. pthread-stubs.pc : devel/libpthread-stubs
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. msgfmt : devel/gettext-tools
  5. gcc9 : lang/gcc9
  6. as : devel/binutils
  7. moc : devel/qt5-buildtools
  8. qmake : devel/qt5-qmake
  9. ice.pc : x11/libICE
  10. sm.pc : x11/libSM
  11. x11.pc : x11/libX11
  12. xau.pc : x11/libXau
  13. xcb.pc : x11/libxcb
  14. xdmcp.pc : x11/libXdmcp
  15. xext.pc : x11/libXext
  16. xrender.pc : x11/libXrender
Runtime dependencies:
  1. gcc9 : lang/gcc9
  2. ice.pc : x11/libICE
  3. sm.pc : x11/libSM
  4. x11.pc : x11/libX11
  5. xau.pc : x11/libXau
  6. xcb.pc : x11/libxcb
  7. xdmcp.pc : x11/libXdmcp
  8. xext.pc : x11/libXext
  9. xrender.pc : x11/libXrender
Library dependencies:
  1. libpcre.so : devel/pcre
  2. libpng.so : graphics/png
  3. libfreetype.so : print/freetype2
  4. libexpat.so : textproc/expat2
  5. libfontconfig.so : x11-fonts/fontconfig
  6. libintl.so : devel/gettext-runtime
  7. libglib-2.0.so : devel/glib20
  8. libintl.so : devel/gettext-runtime
  9. libQt5Core.so : devel/qt5-core
  10. libQt5Gui.so : x11-toolkits/qt5-gui
  11. libQt5Svg.so : graphics/qt5-svg
  12. libQt5Widgets.so : x11-toolkits/qt5-widgets
  13. libQt5Xml.so : textproc/qt5-xml
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://salsa.debian.org//debichem-team/massxpert/repository/c229f4a1abde3c20b83a90e50f9c5d79104dfa5f/archive.tar.gz?dummy=/

Number of commits found: 44

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
28 May 2020 08:43:30
Original commit files touched by this commit  3.6.1_1
Revision:536752
danfe search for other commits by this committer
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
07 Nov 2019 17:17:54
Original commit files touched by this commit  3.6.1_1
Revision:516988
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories s

Add USES=xorg and USES=gl to ports in categories starting with 's'
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.
26 Jul 2019 20:46:57
Original commit files touched by this commit  3.6.1_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
13 Jul 2019 12:50:04
Original commit files touched by this commit  3.6.1
Revision:506542
tcberner search for other commits by this committer
science/massxpert: prepare for Qt 5.13

PR:		238782
27 Apr 2019 08:46:32
Original commit files touched by this commit  3.6.1
Revision:500199
pkubaj search for other commits by this committer
science/massxpert: fix build with GCC-based architectures

Replace USE_GCC=any with USE_GCC=yes to fix build on GCC architectures.

Build failure log:
CMake Error in lib/CMakeLists.txt:

  The compiler feature "cxx_decltype" is not known to CXX compiler

  "GNU"

   version 4.2.1.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D20067
09 Mar 2019 23:23:33
Original commit files touched by this commit  3.6.1
Revision:495214
yuri search for other commits by this committer
science/massxpert: Update 3.4.0 -> 3.6.1

This software seems to be abandoned by its upstream, and rescued by the Debian
team.
I've set its source to Debian's GitLab server, where they source it from now.

Port changes:
* 3.6.1 is Qt5-based: remove the DEPRECATED lines
* USE_GCC seems to be needed due to clang error messages
* MAKE_JOBS_UNSAFE isn't needed
12 Dec 2018 01:35:36
Original commit files touched by this commit  3.4.0_12
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
02 Dec 2018 15:41:48
Original commit files touched by this commit  3.4.0_11
Revision:486467
rene search for other commits by this committer
Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741
29 Jul 2018 22:18:46
Original commit files touched by this commit  3.4.0_11
Revision:475857
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
28 Jun 2018 17:39:55
Original commit files touched by this commit  3.4.0_10
Revision:473503
tcberner search for other commits by this committer
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540
10 Mar 2018 17:46:06
Original commit files touched by this commit  3.4.0_10
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
23 Feb 2018 21:09:47
Original commit files touched by this commit  3.4.0_9
Revision:462745
rene search for other commits by this committer
Reset vg@'s ports after he resigned.

With hat:	portmgr-secretary
10 Sep 2017 20:55:39
Original commit files touched by this commit  3.4.0_9
Revision:449591
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
26 Aug 2017 20:55:41
Original commit files touched by this commit  3.4.0_8
Revision:448784
rakuco search for other commits by this committer
Revert r447879.

Apparently the build is indeed broken with parallel jobs, even though I wasn't
able to reproduce it in my tests. Checking what's broken would take time and
anyone interested in that should rather try updating the port to 3.6.0.

PR:		219293
Reported by:	John Marino <freebsdml@marino.st>
13 Aug 2017 11:20:36
Original commit files touched by this commit  3.4.0_8
Revision:447879
rakuco search for other commits by this committer
Drop MAKE_JOBS_UNSAFE.

Tentatively remove it after testing the port with -j2 and -jLOTS_OF_CORES.

PR:		219293
13 Aug 2017 11:19:52
Original commit files touched by this commit  3.4.0_8
Revision:447878
rakuco search for other commits by this committer
Add patch to drop a wrong ';' in an if check.

In addition to fixing an actual bug, this also fixes the build with GCC 6:

/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:
In member function 'bool massXpert::PropListHolder::removeProp(const QString&)':
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:216:2:
error: this 'if' clause does not guard... [-Werror=misleading-indentation]
  if(m_propList.at(iter)->name() == name);
  ^~
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:217:2:
note: ...this statement, but the latter is misleadingly indented as if it is
guarded by the 'if'
  {

PR:		219293
Approved by:	maintainer timeout (vg, 18 days)
MFH:		2017Q3
26 Jul 2017 17:02:15
Original commit files touched by this commit  3.4.0_7
Revision:446665
rakuco search for other commits by this committer
Update WWW.

The massxpert.org domain no longer belongs to the project.
01 Apr 2017 15:23:32
Original commit files touched by this commit  3.4.0_7
Revision:437439
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
29 Mar 2017 06:50:28
Original commit files touched by this commit  3.4.0_6
Revision:437182
ashish search for other commits by this committer
- Update devel/libpthread-stubs to 0.4
- Chase libpthread-stubs update, and also switch to BUILD_DEPENDS
  from LIB_DEPENDS, as port is now only .pc file

PR:		218015
Submitted by:	rezny
20 Nov 2016 09:38:09
Original commit files touched by this commit  3.4.0_5
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
01 Apr 2016 14:25:18
Original commit files touched by this commit  3.4.0_4
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
11 Sep 2015 09:43:08
Original commit files touched by this commit  3.4.0_4
Revision:396655
rakuco search for other commits by this committer
Drop USES=iconv.

The port's source does not use iconv anywhere, so remove the unnecessary
dependency from the Makefile.

PR:		202717
Approved by:	maintainer timeout (vg, 14 days)
22 Mar 2015 00:06:35
Original commit files touched by this commit  3.4.0_3
Revision:381882
marino search for other commits by this committer
science/massxpert: Fix two logical errors (found by gcc5)

There were two boolean logic issues found by gcc5 when compiling
massxpert.  One was comparing boolean output to a negative integer
(is always false) and the other applied the "not" operator in the wrong
place.  Fix provided per request by maintainer.

PR:	197823
25 Dec 2014 20:54:43
Original commit files touched by this commit  3.4.0_2
Revision:375598
bapt search for other commits by this committer
Bump portrevision after png update
25 Dec 2014 19:04:27
Original commit files touched by this commit  3.4.0_1
Revision:375594
antoine search for other commits by this committer
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade
12 Nov 2014 18:48:53
Original commit files touched by this commit  3.4.0_1
Revision:372500
antoine search for other commits by this committer
Cleanup plist
30 Jun 2014 20:39:00
Original commit files touched by this commit  3.4.0_1
Revision:359917
vg search for other commits by this committer
- Support staging.
16 Apr 2014 18:28:50
Original commit files touched by this commit  3.4.0_1
Revision:351411
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Oct 2013 14:01:39
Original commit files touched by this commit  3.4.0
Revision:331274
amdmi3 search for other commits by this committer
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)
20 Sep 2013 22:48:31
Original commit files touched by this commit  3.4.0
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
22 Jul 2013 14:34:23
Original commit files touched by this commit  3.4.0
Revision:323455
vg search for other commits by this committer
 - Changed my email
 - Trim Makefile headers and positions name and surname within

Approved by:	eadler, rm (mentors)
25 May 2013 14:37:03
Original commit files touched by this commit  3.4.0
Revision:319055
zeising search for other commits by this committer
The FreeBSD x11 team proudly presents
an zeising, kwm, miwi, bapt, eadler production:

Xorg 7.7

Starring:
xserver 1.12.4 (new xorg only)
Mesa 8.0.4, including libGL, libGLU and dri (new xorg only)
libX11 1.5.0
libxcb 1.9
libdrm 2.4.42 (new xorg only)
freeglut 2.8.1
Also starring:
Updates to drivers and other libraries and utilities
(Only the first 15 lines of the commit message are shown above View all of this commit message)
27 Apr 2013 18:25:25
Original commit files touched by this commit  3.4.0
Revision:316683
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
  USE_GETTEXT=yes to USES=gettext while here
24 Apr 2013 07:35:41
Original commit files touched by this commit  3.4.0
Revision:316407
ak search for other commits by this committer
- Convert USE_GETTEXT to USES (part 1)

Approved by:	portmgr (bapt)
22 Mar 2013 20:06:15
Original commit files touched by this commit  3.4.0
Revision:314960
makc search for other commits by this committer
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
09 Feb 2013 14:02:02
Original commit files touched by this commit  3.4.0
Revision:311977
miwi search for other commits by this committer
- Update to 3.4.0

PR:		175601
Submitted by:	maintainer
16 Dec 2012 20:59:40
Original commit files touched by this commit  3.3.0
Revision:309044
pawel search for other commits by this committer
- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line

PR:		ports/174397 [1]
Submitted by:	Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
06 Jun 2012 06:44:38
Original commit files touched by this commit  3.1.0_1

miwi search for other commits by this committer
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)
01 Jun 2012 05:26:28
Original commit files touched by this commit  3.1.0_1

dinoex search for other commits by this committer
- update png to 1.5.10
14 Nov 2011 03:26:46
Original commit files touched by this commit  3.1.0

rakuco search for other commits by this committer
Remove CMAKE_USE_PTHREAD from the ports using it.

This setting has not had any effect since r1.13 to bsd.cmake.mk, as it
was only useful when we supported FreeBSD < 7.

Approved by:    avilla (mentor), portmgr (miwi)
Feature safe:   yes
06 Sep 2011 16:03:47
Original commit files touched by this commit  3.1.0

dhn search for other commits by this committer
- Update to 3.1.0

PR:             ports/160515
Submitted by:   Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
31 Mar 2011 06:51:37
Original commit files touched by this commit  2.4.3

culot search for other commits by this committer
- Update to 2.4.3
- LICENSE added

PR:             ports/156059
Submitted by:   Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
27 May 2010 06:07:41
Original commit files touched by this commit  2.3.6_1

wen search for other commits by this committer
- Fix mans
- Remove USE_LDCONFIG

PR:             ports/146795
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
20 May 2010 09:43:14
Original commit files touched by this commit  2.3.6

wen search for other commits by this committer
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:             ports/146564
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com>

Number of commits found: 44

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