22:51 Lorenzo Salvadore (salvadore) 

science/massxpert: Update to 6.0.3 and adopt

Summary:
- Update to 6.0.3
- Remove unneeded dependency on GCC, fixing [1]
- Style improvements
- Adopt

PR:		263541 [1]
Approved by:	gerald (mentor)
Differential Revision:	https://reviews.freebsd.org/D35072

    c768cdd

23:23 yuri 

science/massxpert: Update 3.4.0 -> 3.6.1

This software seems to be abandoned by its upstream, and rescued by the Debian
team.
I've set its source to Debian's GitLab server, where they source it from now.

Port changes:
* 3.6.1 is Qt5-based: remove the DEPRECATED lines
* USE_GCC seems to be needed due to clang error messages
* MAKE_JOBS_UNSAFE isn't needed

 

18:48 antoine 

Cleanup plist

 

20:39 vg 

- Support staging.

 

14:01 amdmi3 

- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)

 

20:59 pawel 

- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line

PR:		ports/174397 [1]
Submitted by:	Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)

 

06:51 culot 

- Update to 2.4.3
- LICENSE added

PR:             ports/156059
Submitted by:   Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)

06:07 wen 

- Fix mans
- Remove USE_LDCONFIG

PR:             ports/146795
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)

09:43 wen 

The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:             ports/146564
Submitted by:   Gvozdikov Veniamin <g.veniamin@googlemail.com>