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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Port details
p5-Chemistry-Mol Perl toolkit to describe molecules
0.37_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 0.37Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-05-16 23:29:51
Last Update: 2018-10-06 14:06:45
SVN Revision: 481365
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (20 items)
  1. /usr/local/share/licenses/p5-Chemistry-Mol-0.37_1/catalog.mk
  2. /usr/local/share/licenses/p5-Chemistry-Mol-0.37_1/LICENSE
  3. /usr/local/share/licenses/p5-Chemistry-Mol-0.37_1/ART10
  4. /usr/local/share/licenses/p5-Chemistry-Mol-0.37_1/GPLv1+
  5. lib/perl5/site_perl/man/man3/Chemistry::Atom.3.gz
  6. lib/perl5/site_perl/man/man3/Chemistry::Bond.3.gz
  7. lib/perl5/site_perl/man/man3/Chemistry::File.3.gz
  8. lib/perl5/site_perl/man/man3/Chemistry::File::Dumper.3.gz
  9. lib/perl5/site_perl/man/man3/Chemistry::File::Formula.3.gz
  10. lib/perl5/site_perl/man/man3/Chemistry::Mol.3.gz
  11. lib/perl5/site_perl/man/man3/Chemistry::Obj.3.gz
  12. lib/perl5/site_perl/man/man3/Chemistry::Tutorial.3.gz
  13. lib/perl5/site_perl/Chemistry/Atom.pm
  14. lib/perl5/site_perl/Chemistry/Bond.pm
  15. lib/perl5/site_perl/Chemistry/File.pm
  16. lib/perl5/site_perl/Chemistry/File/Dumper.pm
  17. lib/perl5/site_perl/Chemistry/File/Formula.pm
  18. lib/perl5/site_perl/Chemistry/Mol.pm
  19. lib/perl5/site_perl/Chemistry/Obj.pm
  20. lib/perl5/site_perl/Chemistry/Tutorial.pod
Collapse this list.
Dependency lines:
  • p5-Chemistry-Mol>0:science/p5-Chemistry-Mol
To install the port: cd /usr/ports/science/p5-Chemistry-Mol/ && make install clean
To add the package: pkg install p5-Chemistry-Mol
PKGNAME: p5-Chemistry-Mol
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Math-VectorReal>=1.02 : math/p5-Math-VectorReal
  2. perl5>=5.26<5.27 : lang/perl5.26
  3. perl5>=5.26<5.27 : lang/perl5.26
Runtime dependencies:
  1. p5-Math-VectorReal>=1.02 : math/p5-Math-VectorReal
  2. perl5>=5.26<5.27 : lang/perl5.26
This port is required by:
for Build
  1. science/p5-Chemistry-3DBuilder
  2. science/p5-Chemistry-Bond-Find
  3. science/p5-Chemistry-Canonicalize
  4. science/p5-Chemistry-File-MDLMol
  5. science/p5-Chemistry-File-Mopac
  6. science/p5-Chemistry-File-PDB
  7. science/p5-Chemistry-File-SLN
Expand this list (20 items / 13 hidden)
  1. science/p5-Chemistry-File-SMARTS
  2. science/p5-Chemistry-File-SMILES
  3. science/p5-Chemistry-File-VRML
  4. science/p5-Chemistry-File-XYZ
  5. science/p5-Chemistry-FormulaPattern
  6. science/p5-Chemistry-InternalCoords
  7. science/p5-Chemistry-MacroMol
  8. science/p5-Chemistry-MidasPattern
  9. science/p5-Chemistry-Mok
  10. science/p5-Chemistry-Pattern
  11. science/p5-Chemistry-Reaction
  12. science/p5-Chemistry-Ring
  13. science/p5-PerlMol
  14. Collapse this list.
for Run
  1. science/p5-Chemistry-3DBuilder
  2. science/p5-Chemistry-Bond-Find
  3. science/p5-Chemistry-Canonicalize
  4. science/p5-Chemistry-File-MDLMol
  5. science/p5-Chemistry-File-Mopac
  6. science/p5-Chemistry-File-PDB
  7. science/p5-Chemistry-File-SLN
Expand this list (20 items / 13 hidden)
  1. science/p5-Chemistry-File-SMARTS
  2. science/p5-Chemistry-File-SMILES
  3. science/p5-Chemistry-File-VRML
  4. science/p5-Chemistry-File-XYZ
  5. science/p5-Chemistry-FormulaPattern
  6. science/p5-Chemistry-InternalCoords
  7. science/p5-Chemistry-MacroMol
  8. science/p5-Chemistry-MidasPattern
  9. science/p5-Chemistry-Mok
  10. science/p5-Chemistry-Pattern
  11. science/p5-Chemistry-Reaction
  12. science/p5-Chemistry-Ring
  13. science/p5-PerlMol
  14. Collapse this list.

Configuration Options

USES:

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Chemistry/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Chemistry/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Chemistry/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Chemistry/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Chemistry/
  7. http://backpan.perl.org/modules/by-module/Chemistry/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Chemistry/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Chemistry/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Chemistry/
  12. https://www.cpan.org/modules/by-module/Chemistry/

Number of commits found: 11

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Oct 2018 13:06:45
Original commit files touched by this commit  0.37_1
Revision:481365
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
26 Jun 2018 09:07:16
Original commit files touched by this commit  0.37_1
Revision:473377
amdmi3 search for other commits by this committer
- Add LICENSE
- Add NO_ARCH

Approved by:	portmgr blanket
27 May 2018 20:15:20
Original commit files touched by this commit  0.37_1
Revision:470993
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
01 Apr 2016 14:25:18
Original commit files touched by this commit  0.37_1
Revision:412349
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
26 Nov 2014 13:08:38
Original commit files touched by this commit  0.37_1
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
06 Nov 2013 01:32:12
Original commit files touched by this commit  0.37
Revision:332938
vanilla search for other commits by this committer
Support STAGEDIR.
20 Sep 2013 22:48:31
Original commit files touched by this commit  0.37
Revision:327767
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
02 Aug 2013 18:52:11
Original commit files touched by this commit  0.37
Revision:324174
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
06 Dec 2012 02:12:53
Original commit files touched by this commit  0.37
Revision:308360
wen search for other commits by this committer
- Trim Makefile headers
- Pass maintainership to perl@

Feature safe:	yes
> Description of fields to fill in above:                     76 columns --|
> PR:            If a GNATS PR is affected by the change.
> Submitted by:  If someone else sent in the change.
> Reviewed by:   If someone else reviewed your modification.
> Approved by:   If you needed approval for this commit.
> Obtained from: If the change is from a third party.
> MFC after:     N [day[s]|week[s]|month[s]].  Request a reminder email.
> Security:      Vulnerability reference (one per line) or description.
> Empty fields above will be automatically removed.

M    p5-Chemistry-Mol/Makefile
03 Jul 2011 13:22:25
Original commit files touched by this commit  0.37

ohauer search for other commits by this committer
 - remove MD5
16 May 2009 23:29:15
Original commit files touched by this commit  0.37

miwi search for other commits by this committer
Chemistr-Mol is a toolkit includes basic objects and methods to
describe molecules. It consists of several modules: Chemistry::Mol,
Chemistry::Atom, Chemistry::Bond, and Chemistry::File.

WWW: http://search.cpan.org/dist/Chemistry-Mol/

PR:             ports/134462
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 11

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