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Port details
plumed PLUgin for MolEcular Dynamics
2.8.0 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-04 19:56:15
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: graphics
License: LGPL3
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (535 items)
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  1. @ldconfig
  2. /usr/local/share/licenses/plumed-2.8.0/catalog.mk
  3. /usr/local/share/licenses/plumed-2.8.0/LICENSE
  4. /usr/local/share/licenses/plumed-2.8.0/LGPL3
  5. bin/plumed
  6. bin/plumed-config
  7. bin/plumed-patch
  8. include/plumed/analysis/AnalysisBase.h
  9. include/plumed/analysis/AverageVessel.h
  10. include/plumed/analysis/DataCollectionObject.h
  11. include/plumed/analysis/LandmarkSelectionBase.h
  12. include/plumed/analysis/ReadAnalysisFrames.h
  13. include/plumed/asmjit/arch.h
  14. include/plumed/asmjit/arm.h
  15. include/plumed/asmjit/asmjit.h
  16. include/plumed/asmjit/asmjit_apibegin.h
  17. include/plumed/asmjit/asmjit_apiend.h
  18. include/plumed/asmjit/asmjit_build.h
  19. include/plumed/asmjit/assembler.h
  20. include/plumed/asmjit/base.h
  21. include/plumed/asmjit/codebuilder.h
  22. include/plumed/asmjit/codecompiler.h
  23. include/plumed/asmjit/codeemitter.h
  24. include/plumed/asmjit/codeholder.h
  25. include/plumed/asmjit/constpool.h
  26. include/plumed/asmjit/cpuinfo.h
  27. include/plumed/asmjit/func.h
  28. include/plumed/asmjit/globals.h
  29. include/plumed/asmjit/inst.h
  30. include/plumed/asmjit/logging.h
  31. include/plumed/asmjit/misc_p.h
  32. include/plumed/asmjit/moved_string.h
  33. include/plumed/asmjit/operand.h
  34. include/plumed/asmjit/osutils.h
  35. include/plumed/asmjit/regalloc_p.h
  36. include/plumed/asmjit/runtime.h
  37. include/plumed/asmjit/simdtypes.h
  38. include/plumed/asmjit/utils.h
  39. include/plumed/asmjit/vmem.h
  40. include/plumed/asmjit/x86.h
  41. include/plumed/asmjit/x86assembler.h
  42. include/plumed/asmjit/x86builder.h
  43. include/plumed/asmjit/x86compiler.h
  44. include/plumed/asmjit/x86emitter.h
  45. include/plumed/asmjit/x86globals.h
  46. include/plumed/asmjit/x86inst.h
  47. include/plumed/asmjit/x86instimpl_p.h
  48. include/plumed/asmjit/x86internal_p.h
  49. include/plumed/asmjit/x86logging_p.h
  50. include/plumed/asmjit/x86misc.h
  51. include/plumed/asmjit/x86operand.h
  52. include/plumed/asmjit/x86regalloc_p.h
  53. include/plumed/asmjit/zone.h
  54. include/plumed/bias/ActionRegister.h
  55. include/plumed/bias/Bias.h
  56. include/plumed/bias/ReweightBase.h
  57. include/plumed/blas/blas.h
  58. include/plumed/blas/def_external.h
  59. include/plumed/blas/def_internal.h
  60. include/plumed/blas/real.h
  61. include/plumed/cltools/CLTool.h
  62. include/plumed/cltools/CLToolRegister.h
  63. include/plumed/colvar/ActionRegister.h
  64. include/plumed/colvar/Colvar.h
  65. include/plumed/colvar/CoordinationBase.h
  66. include/plumed/colvar/PathMSDBase.h
  67. include/plumed/config/Config.h
  68. include/plumed/config/version.h
  69. include/plumed/core/Action.h
  70. include/plumed/core/ActionAnyorder.h
  71. include/plumed/core/ActionAtomistic.h
  72. include/plumed/core/ActionPilot.h
  73. include/plumed/core/ActionRegister.h
  74. include/plumed/core/ActionSet.h
  75. include/plumed/core/ActionSetup.h
  76. include/plumed/core/ActionShortcut.h
  77. include/plumed/core/ActionWithArguments.h
  78. include/plumed/core/ActionWithValue.h
  79. include/plumed/core/ActionWithVirtualAtom.h
  80. include/plumed/core/Atoms.h
  81. include/plumed/core/CLTool.h
  82. include/plumed/core/CLToolMain.h
  83. include/plumed/core/CLToolRegister.h
  84. include/plumed/core/Colvar.h
  85. include/plumed/core/DataFetchingObject.h
  86. include/plumed/core/ExchangePatterns.h
  87. include/plumed/core/FlexibleBin.h
  88. include/plumed/core/GREX.h
  89. include/plumed/core/GenericMolInfo.h
  90. include/plumed/core/MDAtoms.h
  91. include/plumed/core/PlumedMain.h
  92. include/plumed/core/PlumedMainInitializer.h
  93. include/plumed/core/TargetDist.h
  94. include/plumed/core/Value.h
  95. include/plumed/core/WithCmd.h
  96. include/plumed/function/ActionRegister.h
  97. include/plumed/function/Function.h
  98. include/plumed/gridtools/ActionWithGrid.h
  99. include/plumed/gridtools/ActionWithInputGrid.h
  100. include/plumed/gridtools/ActionWithIntegral.h
  101. include/plumed/gridtools/AverageOnGrid.h
  102. include/plumed/gridtools/ContourFindingBase.h
  103. include/plumed/gridtools/GridPrintingBase.h
  104. include/plumed/gridtools/GridSearch.h
  105. include/plumed/gridtools/GridVessel.h
  106. include/plumed/gridtools/HistogramOnGrid.h
  107. include/plumed/isdb/MetainferenceBase.h
  108. include/plumed/lapack/def_external.h
  109. include/plumed/lapack/def_internal.h
  110. include/plumed/lapack/lapack.h
  111. include/plumed/lapack/lapack_limits.h
  112. include/plumed/lapack/real.h
  113. include/plumed/lepton/CompiledExpression.h
  114. include/plumed/lepton/CustomFunction.h
  115. include/plumed/lepton/Exception.h
  116. include/plumed/lepton/ExpressionProgram.h
  117. include/plumed/lepton/ExpressionTreeNode.h
  118. include/plumed/lepton/Lepton.h
  119. include/plumed/lepton/MSVC_erfc.h
  120. include/plumed/lepton/Operation.h
  121. include/plumed/lepton/ParsedExpression.h
  122. include/plumed/lepton/Parser.h
  123. include/plumed/lepton/windowsIncludes.h
  124. include/plumed/mapping/Mapping.h
  125. include/plumed/mapping/PathBase.h
  126. include/plumed/mapping/PathReparameterization.h
  127. include/plumed/mapping/TrigonometricPathVessel.h
  128. include/plumed/molfile/Gromacs.h
  129. include/plumed/molfile/endianswap.h
  130. include/plumed/molfile/fastio.h
  131. include/plumed/molfile/largefiles.h
  132. include/plumed/molfile/libmolfile_plugin.h
  133. include/plumed/molfile/molfile_plugin.h
  134. include/plumed/molfile/periodic_table.h
  135. include/plumed/molfile/readpdb.h
  136. include/plumed/molfile/vmdplugin.h
  137. include/plumed/multicolvar/ActionVolume.h
  138. include/plumed/multicolvar/AtomValuePack.h
  139. include/plumed/multicolvar/BridgedMultiColvarFunction.h
  140. include/plumed/multicolvar/CatomPack.h
  141. include/plumed/multicolvar/MultiColvarBase.h
  142. include/plumed/multicolvar/MultiColvarFilter.h
  143. include/plumed/multicolvar/VolumeGradientBase.h
  144. include/plumed/reference/ArgumentOnlyDistance.h
  145. include/plumed/reference/DRMSD.h
  146. include/plumed/reference/Direction.h
  147. include/plumed/reference/FakeFrame.h
  148. include/plumed/reference/MetricRegister.h
  149. include/plumed/reference/MultiDomainRMSD.h
  150. include/plumed/reference/RMSDBase.h
  151. include/plumed/reference/ReferenceArguments.h
  152. include/plumed/reference/ReferenceAtoms.h
  153. include/plumed/reference/ReferenceConfiguration.h
  154. include/plumed/reference/ReferenceValuePack.h
  155. include/plumed/reference/SingleDomainRMSD.h
  156. include/plumed/secondarystructure/SecondaryStructureRMSD.h
  157. include/plumed/setup/ActionSetup.h
  158. include/plumed/tools/Angle.h
  159. include/plumed/tools/AtomNumber.h
  160. include/plumed/tools/BiasRepresentation.h
  161. include/plumed/tools/Brent1DRootSearch.h
  162. include/plumed/tools/Citations.h
  163. include/plumed/tools/Communicator.h
  164. include/plumed/tools/ConjugateGradient.h
  165. include/plumed/tools/DLLoader.h
  166. include/plumed/tools/DynamicList.h
  167. include/plumed/tools/ERMSD.h
  168. include/plumed/tools/Exception.h
  169. include/plumed/tools/File.h
  170. include/plumed/tools/FileBase.h
  171. include/plumed/tools/ForwardDecl.h
  172. include/plumed/tools/Grid.h
  173. include/plumed/tools/HistogramBead.h
  174. include/plumed/tools/IFile.h
  175. include/plumed/tools/KernelFunctions.h
  176. include/plumed/tools/Keywords.h
  177. include/plumed/tools/LatticeReduction.h
  178. include/plumed/tools/LinkCells.h
  179. include/plumed/tools/Log.h
  180. include/plumed/tools/LoopUnroller.h
  181. include/plumed/tools/Matrix.h
  182. include/plumed/tools/MatrixSquareBracketsAccess.h
  183. include/plumed/tools/Minimise1DBrent.h
  184. include/plumed/tools/MinimiseBase.h
  185. include/plumed/tools/MolDataClass.h
  186. include/plumed/tools/MultiValue.h
  187. include/plumed/tools/NeighborList.h
  188. include/plumed/tools/OFile.h
  189. include/plumed/tools/OpenMP.h
  190. include/plumed/tools/PDB.h
  191. include/plumed/tools/Pbc.h
  192. include/plumed/tools/PlumedHandle.h
  193. include/plumed/tools/RMSD.h
  194. include/plumed/tools/Random.h
  195. include/plumed/tools/RootFindingBase.h
  196. include/plumed/tools/Stopwatch.h
  197. include/plumed/tools/Subprocess.h
  198. include/plumed/tools/SwitchingFunction.h
  199. include/plumed/tools/Tensor.h
  200. include/plumed/tools/Tools.h
  201. include/plumed/tools/Torsion.h
  202. include/plumed/tools/Tree.h
  203. include/plumed/tools/TypesafePtr.h
  204. include/plumed/tools/Units.h
  205. include/plumed/tools/Vector.h
  206. include/plumed/tools/h36.h
  207. include/plumed/vatom/ActionRegister.h
  208. include/plumed/vatom/ActionWithVirtualAtom.h
  209. include/plumed/vesselbase/ActionWithAveraging.h
  210. include/plumed/vesselbase/ActionWithInputVessel.h
  211. include/plumed/vesselbase/ActionWithVessel.h
  212. include/plumed/vesselbase/AveragingVessel.h
  213. include/plumed/vesselbase/Between.h
  214. include/plumed/vesselbase/BridgeVessel.h
  215. include/plumed/vesselbase/FunctionVessel.h
  216. include/plumed/vesselbase/LessThan.h
  217. include/plumed/vesselbase/OrderingVessel.h
  218. include/plumed/vesselbase/ShortcutVessel.h
  219. include/plumed/vesselbase/StoreDataVessel.h
  220. include/plumed/vesselbase/ValueVessel.h
  221. include/plumed/vesselbase/Vessel.h
  222. include/plumed/vesselbase/VesselRegister.h
  223. include/plumed/wrapper/Plumed.h
  224. include/plumed/xdrfile/xdrfile.h
  225. include/plumed/xdrfile/xdrfile_trr.h
  226. include/plumed/xdrfile/xdrfile_xtc.h
  227. lib/libplumed.a
  228. lib/libplumed.so
  229. lib/libplumedKernel.so
  230. lib/libplumedWrapper.a
  231. lib/plumed/fortran/plumed.f90
  232. lib/plumed/fortran/plumed_f08.f90
  233. lib/plumed/modulefile
  234. lib/plumed/patches/gromacs-2019.6.config
  235. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/CMakeLists.txt
  236. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/CMakeLists.txt.preplumed
  237. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdlib/force.cpp
  238. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdlib/force.cpp.preplumed
  239. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  240. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  241. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.h
  242. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  243. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/md.cpp
  244. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/md.cpp.preplumed
  245. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/minimize.cpp
  246. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  247. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.cpp
  248. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  249. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.h
  250. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  251. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/runner.cpp
  252. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/runner.cpp.preplumed
  253. lib/plumed/patches/gromacs-2020.6.config
  254. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/CMakeLists.txt
  255. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/CMakeLists.txt.preplumed
  256. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.cpp
  257. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.cpp.preplumed
  258. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.h
  259. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.h.preplumed
  260. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/force.cpp
  261. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/force.cpp.preplumed
  262. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  263. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  264. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.h
  265. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  266. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/md.cpp
  267. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/md.cpp.preplumed
  268. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/minimize.cpp
  269. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  270. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.cpp
  271. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  272. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.h
  273. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  274. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/runner.cpp
  275. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/runner.cpp.preplumed
  276. lib/plumed/patches/gromacs-2021.4.config
  277. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/CMakeLists.txt
  278. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/CMakeLists.txt.preplumed
  279. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.cpp
  280. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.cpp.preplumed
  281. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.h
  282. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.h.preplumed
  283. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/sim_util.cpp
  284. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/sim_util.cpp.preplumed
  285. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  286. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  287. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.h
  288. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  289. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/md.cpp
  290. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/md.cpp.preplumed
  291. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/minimize.cpp
  292. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  293. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.cpp
  294. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  295. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.h
  296. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  297. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/runner.cpp
  298. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/runner.cpp.preplumed
  299. lib/plumed/patches/gromacs-4.5.7.config
  300. lib/plumed/patches/gromacs-4.5.7.diff
  301. lib/plumed/patches/namd-2.12.config
  302. lib/plumed/patches/namd-2.12.diff
  303. lib/plumed/patches/namd-2.13.config
  304. lib/plumed/patches/namd-2.13.diff
  305. lib/plumed/patches/namd-2.14.config
  306. lib/plumed/patches/namd-2.14.diff
  307. lib/plumed/patches/patch.sh
  308. lib/plumed/patches/qespresso-5.0.2.config
  309. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90
  310. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90.preplumed
  311. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90
  312. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90.preplumed
  313. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90
  314. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90.preplumed
  315. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90
  316. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90.preplumed
  317. lib/plumed/patches/qespresso-6.2.config
  318. lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90
  319. lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90.preplumed
  320. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90
  321. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90.preplumed
  322. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90
  323. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90.preplumed
  324. lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90
  325. lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90.preplumed
  326. lib/plumed/plumed-config
  327. lib/plumed/plumed-mklib
  328. lib/plumed/plumed-newcv
  329. lib/plumed/plumed-partial_tempering
  330. lib/plumed/plumed-patch
  331. lib/plumed/plumed-runtime
  332. lib/plumed/plumed-selector
  333. lib/plumed/plumed-vim2html
  334. lib/plumed/scripts/config.sh
  335. lib/plumed/scripts/mklib.sh
  336. lib/plumed/scripts/newcv.sh
  337. lib/plumed/scripts/partial_tempering.sh
  338. lib/plumed/scripts/patch.sh
  339. lib/plumed/scripts/selector.sh
  340. lib/plumed/scripts/vim2html.sh
  341. lib/plumed/src/colvar/Template.cpp
  342. lib/plumed/src/config/compile_options.sh
  343. lib/plumed/src/config/config.txt
  344. lib/plumed/src/lib/Plumed.cmake
  345. lib/plumed/src/lib/Plumed.cmake.runtime
  346. lib/plumed/src/lib/Plumed.cmake.shared
  347. lib/plumed/src/lib/Plumed.cmake.static
  348. lib/plumed/src/lib/Plumed.inc
  349. lib/plumed/src/lib/Plumed.inc.runtime
  350. lib/plumed/src/lib/Plumed.inc.shared
  351. lib/plumed/src/lib/Plumed.inc.static
  352. lib/plumed/vim/help/ABMD.txt
  353. lib/plumed/vim/help/ADAPTIVE_PATH.txt
  354. lib/plumed/vim/help/ALPHABETA.txt
  355. lib/plumed/vim/help/ALPHARMSD.txt
  356. lib/plumed/vim/help/ANGLE.txt
  357. lib/plumed/vim/help/ANGLES.txt
  358. lib/plumed/vim/help/ANTIBETARMSD.txt
  359. lib/plumed/vim/help/AROUND.txt
  360. lib/plumed/vim/help/AVERAGE.txt
  361. lib/plumed/vim/help/BIASVALUE.txt
  362. lib/plumed/vim/help/BRIDGE.txt
  363. lib/plumed/vim/help/CALIBER.txt
  364. lib/plumed/vim/help/CAVITY.txt
  365. lib/plumed/vim/help/CELL.txt
  366. lib/plumed/vim/help/CENTER.txt
  367. lib/plumed/vim/help/CENTER_OF_MULTICOLVAR.txt
  368. lib/plumed/vim/help/COLLECT_FRAMES.txt
  369. lib/plumed/vim/help/COM.txt
  370. lib/plumed/vim/help/COMBINE.txt
  371. lib/plumed/vim/help/COMMITTOR.txt
  372. lib/plumed/vim/help/CONSTANT.txt
  373. lib/plumed/vim/help/CONTACTMAP.txt
  374. lib/plumed/vim/help/CONVERT_TO_FES.txt
  375. lib/plumed/vim/help/COORDINATION.txt
  376. lib/plumed/vim/help/COORDINATIONNUMBER.txt
  377. lib/plumed/vim/help/CS2BACKBONE.txt
  378. lib/plumed/vim/help/CUSTOM.txt
  379. lib/plumed/vim/help/DEBUG.txt
  380. lib/plumed/vim/help/DENSITY.txt
  381. lib/plumed/vim/help/DHENERGY.txt
  382. lib/plumed/vim/help/DIHCOR.txt
  383. lib/plumed/vim/help/DIMER.txt
  384. lib/plumed/vim/help/DIPOLE.txt
  385. lib/plumed/vim/help/DISTANCE.txt
  386. lib/plumed/vim/help/DISTANCES.txt
  387. lib/plumed/vim/help/DISTANCE_FROM_CONTOUR.txt
  388. lib/plumed/vim/help/DRMSD.txt
  389. lib/plumed/vim/help/DUMPATOMS.txt
  390. lib/plumed/vim/help/DUMPCUBE.txt
  391. lib/plumed/vim/help/DUMPDERIVATIVES.txt
  392. lib/plumed/vim/help/DUMPFORCES.txt
  393. lib/plumed/vim/help/DUMPGRID.txt
  394. lib/plumed/vim/help/DUMPMASSCHARGE.txt
  395. lib/plumed/vim/help/DUMPMULTICOLVAR.txt
  396. lib/plumed/vim/help/DUMPPROJECTIONS.txt
  397. lib/plumed/vim/help/EEFSOLV.txt
  398. lib/plumed/vim/help/EFFECTIVE_ENERGY_DRIFT.txt
  399. lib/plumed/vim/help/EMMI.txt
  400. lib/plumed/vim/help/ENDPLUMED.txt
  401. lib/plumed/vim/help/ENERGY.txt
  402. lib/plumed/vim/help/ENSEMBLE.txt
  403. lib/plumed/vim/help/ERMSD.txt
  404. lib/plumed/vim/help/EUCLIDEAN_DISSIMILARITIES.txt
  405. lib/plumed/vim/help/EXTENDED_LAGRANGIAN.txt
  406. lib/plumed/vim/help/EXTERNAL.txt
  407. lib/plumed/vim/help/EXTRACV.txt
  408. lib/plumed/vim/help/FAKE.txt
  409. lib/plumed/vim/help/FIND_CONTOUR.txt
  410. lib/plumed/vim/help/FIND_CONTOUR_SURFACE.txt
  411. lib/plumed/vim/help/FIND_SPHERICAL_CONTOUR.txt
  412. lib/plumed/vim/help/FIT_TO_TEMPLATE.txt
  413. lib/plumed/vim/help/FIXEDATOM.txt
  414. lib/plumed/vim/help/FLUSH.txt
  415. lib/plumed/vim/help/FOURIER_TRANSFORM.txt
  416. lib/plumed/vim/help/FRET.txt
  417. lib/plumed/vim/help/FUNCPATHGENERAL.txt
  418. lib/plumed/vim/help/FUNCPATHMSD.txt
  419. lib/plumed/vim/help/FUNCSUMHILLS.txt
  420. lib/plumed/vim/help/GHBFIX.txt
  421. lib/plumed/vim/help/GHOST.txt
  422. lib/plumed/vim/help/GPROPERTYMAP.txt
  423. lib/plumed/vim/help/GRID_TO_XYZ.txt
  424. lib/plumed/vim/help/GROUP.txt
  425. lib/plumed/vim/help/GYRATION.txt
  426. lib/plumed/vim/help/HISTOGRAM.txt
  427. lib/plumed/vim/help/INCLUDE.txt
  428. lib/plumed/vim/help/INCYLINDER.txt
  429. lib/plumed/vim/help/INENVELOPE.txt
  430. lib/plumed/vim/help/INPLANEDISTANCES.txt
  431. lib/plumed/vim/help/INSPHERE.txt
  432. lib/plumed/vim/help/INTEGRATE_GRID.txt
  433. lib/plumed/vim/help/INTERPOLATE_GRID.txt
  434. lib/plumed/vim/help/JCOUPLING.txt
  435. lib/plumed/vim/help/LANDMARK_SELECT_FPS.txt
  436. lib/plumed/vim/help/LANDMARK_SELECT_RANDOM.txt
  437. lib/plumed/vim/help/LANDMARK_SELECT_STAGED.txt
  438. lib/plumed/vim/help/LANDMARK_SELECT_STRIDE.txt
  439. lib/plumed/vim/help/LOAD.txt
  440. lib/plumed/vim/help/LOCALENSEMBLE.txt
  441. lib/plumed/vim/help/LOCAL_AVERAGE.txt
  442. lib/plumed/vim/help/LOWER_WALLS.txt
  443. lib/plumed/vim/help/MATHEVAL.txt
  444. lib/plumed/vim/help/MAXENT.txt
  445. lib/plumed/vim/help/MCOLV_COMBINE.txt
  446. lib/plumed/vim/help/MCOLV_PRODUCT.txt
  447. lib/plumed/vim/help/METAD.txt
  448. lib/plumed/vim/help/METAINFERENCE.txt
  449. lib/plumed/vim/help/MFILTER_BETWEEN.txt
  450. lib/plumed/vim/help/MFILTER_LESS.txt
  451. lib/plumed/vim/help/MFILTER_MORE.txt
  452. lib/plumed/vim/help/MOLINFO.txt
  453. lib/plumed/vim/help/MOVINGRESTRAINT.txt
  454. lib/plumed/vim/help/MTRANSFORM_BETWEEN.txt
  455. lib/plumed/vim/help/MTRANSFORM_LESS.txt
  456. lib/plumed/vim/help/MTRANSFORM_MORE.txt
  457. lib/plumed/vim/help/MULTICOLVARDENS.txt
  458. lib/plumed/vim/help/MULTI_RMSD.txt
  459. lib/plumed/vim/help/NLINKS.txt
  460. lib/plumed/vim/help/NOE.txt
  461. lib/plumed/vim/help/OUTPUT_ANALYSIS_DATA_TO_COLVAR.txt
  462. lib/plumed/vim/help/OUTPUT_ANALYSIS_DATA_TO_PDB.txt
  463. lib/plumed/vim/help/PARABETARMSD.txt
  464. lib/plumed/vim/help/PATH.txt
  465. lib/plumed/vim/help/PATHMSD.txt
  466. lib/plumed/vim/help/PBMETAD.txt
  467. lib/plumed/vim/help/PCARMSD.txt
  468. lib/plumed/vim/help/PCAVARS.txt
  469. lib/plumed/vim/help/PCS.txt
  470. lib/plumed/vim/help/PIECEWISE.txt
  471. lib/plumed/vim/help/PLUMED.txt
  472. lib/plumed/vim/help/POSITION.txt
  473. lib/plumed/vim/help/PRE.txt
  474. lib/plumed/vim/help/PRINT.txt
  475. lib/plumed/vim/help/PRINT_DISSIMILARITY_MATRIX.txt
  476. lib/plumed/vim/help/PROJECTION_ON_AXIS.txt
  477. lib/plumed/vim/help/PROPERTYMAP.txt
  478. lib/plumed/vim/help/PUCKERING.txt
  479. lib/plumed/vim/help/RANDOM_EXCHANGES.txt
  480. lib/plumed/vim/help/RDC.txt
  481. lib/plumed/vim/help/READ.txt
  482. lib/plumed/vim/help/READ_DISSIMILARITY_MATRIX.txt
  483. lib/plumed/vim/help/RESCALE.txt
  484. lib/plumed/vim/help/RESELECT_LANDMARKS.txt
  485. lib/plumed/vim/help/RESET_CELL.txt
  486. lib/plumed/vim/help/RESTART.txt
  487. lib/plumed/vim/help/RESTRAINT.txt
  488. lib/plumed/vim/help/REWEIGHT_BIAS.txt
  489. lib/plumed/vim/help/REWEIGHT_METAD.txt
  490. lib/plumed/vim/help/REWEIGHT_TEMP_PRESS.txt
  491. lib/plumed/vim/help/REWEIGHT_WHAM.txt
  492. lib/plumed/vim/help/RMSD.txt
  493. lib/plumed/vim/help/SAXS.txt
  494. lib/plumed/vim/help/SELECT.txt
  495. lib/plumed/vim/help/SELECTOR.txt
  496. lib/plumed/vim/help/SORT.txt
  497. lib/plumed/vim/help/STATS.txt
  498. lib/plumed/vim/help/TARGET.txt
  499. lib/plumed/vim/help/TEMPLATE.txt
  500. lib/plumed/vim/help/TETRAHEDRALPORE.txt
  501. lib/plumed/vim/help/TIME.txt
  502. lib/plumed/vim/help/TORSION.txt
  503. lib/plumed/vim/help/TORSIONS.txt
  504. lib/plumed/vim/help/UNITS.txt
  505. lib/plumed/vim/help/UPDATE_IF.txt
  506. lib/plumed/vim/help/UPPER_WALLS.txt
  507. lib/plumed/vim/help/VOLUME.txt
  508. lib/plumed/vim/help/WHAM_HISTOGRAM.txt
  509. lib/plumed/vim/help/WHAM_WEIGHTS.txt
  510. lib/plumed/vim/help/WHOLEMOLECULES.txt
  511. lib/plumed/vim/help/WRAPAROUND.txt
  512. lib/plumed/vim/help/XANGLES.txt
  513. lib/plumed/vim/help/XDISTANCES.txt
  514. lib/plumed/vim/help/XYDISTANCES.txt
  515. lib/plumed/vim/help/XYTORSIONS.txt
  516. lib/plumed/vim/help/XZDISTANCES.txt
  517. lib/plumed/vim/help/XZTORSIONS.txt
  518. lib/plumed/vim/help/YANGLES.txt
  519. lib/plumed/vim/help/YDISTANCES.txt
  520. lib/plumed/vim/help/YXTORSIONS.txt
  521. lib/plumed/vim/help/YZDISTANCES.txt
  522. lib/plumed/vim/help/YZTORSIONS.txt
  523. lib/plumed/vim/help/ZANGLES.txt
  524. lib/plumed/vim/help/ZDISTANCES.txt
  525. lib/plumed/vim/help/ZXTORSIONS.txt
  526. lib/plumed/vim/help/ZYTORSIONS.txt
  527. lib/plumed/vim/scripts.vim
  528. lib/plumed/vim/syntax/plumed.vim
  529. lib/plumed/vim/syntax/plumedf.vim
  530. libdata/pkgconfig/plumed.pc
  531. libdata/pkgconfig/plumedInternals.pc
  532. libdata/pkgconfig/plumedWrapper.pc
  533. @owner
  534. @group
  535. @mode
Collapse this list.
Dependency lines:
  • plumed>0:science/plumed
To install the port:
cd /usr/ports/science/plumed/ && make install clean
To add the package, run one of these commands:
  • pkg install science/plumed
  • pkg install plumed
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: plumed
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
plumed
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout2.6.0
FreeBSD:11:amd642.7.22.7.1
FreeBSD:11:armv6pkg-fallout2.6.0
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout2.8.0
FreeBSD:12:amd642.8.02.8.0
FreeBSD:12:armv6pkg-fallout2.6.1
FreeBSD:12:armv7pkg-fallout2.6.1
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout2.7.0
FreeBSD:13:aarch642.8.02.8.0
FreeBSD:13:amd642.8.02.8.0
FreeBSD:13:armv62.7.0pkg-fallout
FreeBSD:13:armv72.8.02.8.0
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips642.7.02.7.0
FreeBSD:13:powerpc642.7.02.8.0
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch642.8.0pkg-fallout
FreeBSD:14:amd642.8.0pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv72.8.0pkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.8.0pkg-fallout
FreeBSD:14:riscv642.7.2pkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. gmake>=4.3 : devel/gmake
  3. pkgconf>=1.3.0_1 : devel/pkgconf
  4. autoconf>=2.71 : devel/autoconf
  5. automake>=1.16.5 : devel/automake
Runtime dependencies:
  1. bash : shells/bash
Library dependencies:
  1. libblas.so : math/blas
  2. libfftw3.so : math/fftw3
  3. libgsl.so : math/gsl
  4. liblapack.so : math/lapack
This port is required by:
for Libraries
  1. science/dftbplus
  2. science/lammps

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://github.com/plumed/plumed2/releases/download/v2.8.0/
Collapse this list.

Number of commits found: 19

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.8.0
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.8.0
23 May 2022 11:39:54
commit hash:8560babc8acaaf83032e9549b8953c7bfd1677b7commit hash:8560babc8acaaf83032e9549b8953c7bfd1677b7commit hash:8560babc8acaaf83032e9549b8953c7bfd1677b7commit hash:8560babc8acaaf83032e9549b8953c7bfd1677b7 files touched by this commit
Daniel Engberg (diizzy) search for other commits by this committer
science/plumed: Use upsteam release archive

Use upstream release archive as recommended by Porters Handbook

PR:		264023
Approved by:	yuri (maintainer)
2.8.0
23 Feb 2022 17:02:06
commit hash:265b2b6c62dd4a18440d88bf62ecb21034f29b87commit hash:265b2b6c62dd4a18440d88bf62ecb21034f29b87commit hash:265b2b6c62dd4a18440d88bf62ecb21034f29b87commit hash:265b2b6c62dd4a18440d88bf62ecb21034f29b87 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.8b -> 2.8.0

Reported by:	portscout
2.8.b_2
12 Jan 2022 19:41:22
commit hash:654acd81409d31495f8b1b11db61e1afbf640981commit hash:654acd81409d31495f8b1b11db61e1afbf640981commit hash:654acd81409d31495f8b1b11db61e1afbf640981commit hash:654acd81409d31495f8b1b11db61e1afbf640981 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201
2.8.b_1
05 Jan 2022 01:31:24
commit hash:521a9557f0bb69046cffd25dfd76a3ff3798bd99commit hash:521a9557f0bb69046cffd25dfd76a3ff3798bd99commit hash:521a9557f0bb69046cffd25dfd76a3ff3798bd99commit hash:521a9557f0bb69046cffd25dfd76a3ff3798bd99 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Add missing dependencies and binary alias which fixes most
tests.
2.8.b
04 Jan 2022 22:30:11
commit hash:29c3e2e6e1de61d7811499849a3755aa5e40bbdbcommit hash:29c3e2e6e1de61d7811499849a3755aa5e40bbdbcommit hash:29c3e2e6e1de61d7811499849a3755aa5e40bbdbcommit hash:29c3e2e6e1de61d7811499849a3755aa5e40bbdb files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Fix the test target
2.8.b
04 Jan 2022 07:11:22
commit hash:1e450a952cb8dcc8270dbb1d5fee8e301d39d98ecommit hash:1e450a952cb8dcc8270dbb1d5fee8e301d39d98ecommit hash:1e450a952cb8dcc8270dbb1d5fee8e301d39d98ecommit hash:1e450a952cb8dcc8270dbb1d5fee8e301d39d98e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.2 -> 2.8b
2.7.2
02 Sep 2021 18:09:29
commit hash:58f45200bc83594c793dab6d1bb65347f061c6bfcommit hash:58f45200bc83594c793dab6d1bb65347f061c6bfcommit hash:58f45200bc83594c793dab6d1bb65347f061c6bfcommit hash:58f45200bc83594c793dab6d1bb65347f061c6bf files touched by this commit
Adam Weinberger (adamw) search for other commits by this committer
many: Depend on vim instead of vim-console
2.7.2
28 Jul 2021 17:13:47
commit hash:3ab9c7e06555a6f9c6e28b1016ab432af6a2c7c3commit hash:3ab9c7e06555a6f9c6e28b1016ab432af6a2c7c3commit hash:3ab9c7e06555a6f9c6e28b1016ab432af6a2c7c3commit hash:3ab9c7e06555a6f9c6e28b1016ab432af6a2c7c3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.1 -> 2.7.2

Reported by:	portscout
2.7.1
17 Apr 2021 04:00:57
commit hash:70eb5bbeb0ab2c8f4cf1ece3242eb552db1f1c3acommit hash:70eb5bbeb0ab2c8f4cf1ece3242eb552db1f1c3acommit hash:70eb5bbeb0ab2c8f4cf1ece3242eb552db1f1c3acommit hash:70eb5bbeb0ab2c8f4cf1ece3242eb552db1f1c3a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.0 -> 2.7.1

Reported by:	portscout
2.7.0
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.7.0
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.7.0
03 Jan 2021 06:32:47
Revision:559994Original commit files touched by this commit
yuri search for other commits by this committer
science/plumed: Update 2.6.2 -> 2.7.0

Reported by:	portscout
2.6.2
28 Oct 2020 01:33:15
Revision:553521Original commit files touched by this commit
yuri search for other commits by this committer
science/plumed: Update 2.6.1 -> 2.6.2

Reported by:	portscout
2.6.1
16 Jul 2020 19:51:31
Revision:542385Original commit files touched by this commit
yuri search for other commits by this committer
science/plumed: Update 2.6.0 -> 2.6.1

Reported by:	portscout
2.6.0
23 May 2020 21:59:28
Revision:536357Original commit files touched by this commit
yuri search for other commits by this committer
science/plumed: Broken on i386

Reported by:	fallout
2.6.0
06 May 2020 12:00:53
Revision:534167Original commit files touched by this commit
linimon search for other commits by this committer
Add compiler:c++11-lang to USES to fix build on GCC-based systems:

  core/../../core/tools/../../tools/Vector.h:27:17: error: array: No such file
or directory
2.6.0
04 May 2020 19:55:51
Revision:533981Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/plumed: PLUgin for MolEcular Dynamics

Number of commits found: 19