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Port details
py-avogadrolibs Python bindings for Avogadro2 chemistry libraries
1.99.0 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.99.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-21 17:52:45
Last Update: 2024-02-12 23:07:35
Commit Hash: e2d8c2c
License: GPLv2
WWW:
https://two.avogadro.cc/
Description:
Python bindings for Avogadro2 libraries, libraries that are a foundation of the Avogadro 2 project. Avogadro 2 is a chemical editor and visualization application, it is also a set of reusable software libraries written in C++ using principles of modularity for maximum reuse.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}avogadrolibs>0:science/py-avogadrolibs@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-avogadrolibs/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-avogadrolibs
  • pkg install py39-avogadrolibs
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-avogadrolibs listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-avogadrolibs
Package flavors (<flavor>: <package>)
  • py39: py39-avogadrolibs
distinfo:
TIMESTAMP = 1707762010 SHA256 (OpenChemistry-avogadrolibs-1.99.0_GH0.tar.gz) = 34808e3c602b0f60f3c160ff0220832aee777db86e962e3f958c6327fb434063 SIZE (OpenChemistry-avogadrolibs-1.99.0_GH0.tar.gz) = 4858298

Packages (timestamps in pop-ups are UTC):
py311-avogadrolibs
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.99.01.99.0-1.99.01.99.0---
FreeBSD:13:quarterly-1.99.0--1.99.0---
FreeBSD:14:latest1.99.01.99.0-1.99.01.99.0---
FreeBSD:14:quarterly-1.99.0--1.99.0---
FreeBSD:15:latest1.99.01.99.0n/a-n/a---
 

py39-avogadrolibs
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly1.99.0--1.99.0--1.97.0_11.97.0_1
FreeBSD:14:latest--------
FreeBSD:14:quarterly1.99.0--1.99.0--1.97.0_11.97.0_1
FreeBSD:15:latest--n/a1.99.0n/a-1.97.0_11.99.0
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. pybind11.h : devel/pybind11
  2. cmake : devel/cmake-core
  3. ninja : devel/ninja
  4. eigen3.pc : math/eigen3
  5. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
Library dependencies:
  1. libAvogadroCore.so : science/avogadrolibs
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-avogadrolibs
USES:
cmake compiler:c++11-lang eigen:3 python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/OpenChemistry/avogadrolibs/tar.gz/1.99.0?dummy=/
Collapse this list.

Number of commits found: 20

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.99.0
12 Feb 2024 23:07:35
commit hash: e2d8c2cf8a931140a60759f2b4cf274df94dd9f4commit hash: e2d8c2cf8a931140a60759f2b4cf274df94dd9f4commit hash: e2d8c2cf8a931140a60759f2b4cf274df94dd9f4commit hash: e2d8c2cf8a931140a60759f2b4cf274df94dd9f4 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}avogadrolibs: update 1.97.0 → 1.99.0

Reported by:	portscout
1.97.0_1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.97.0_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.97.0
20 Nov 2022 00:10:49
commit hash: 9ad42aa3d75e8fe7951768825f2c385198512e0ccommit hash: 9ad42aa3d75e8fe7951768825f2c385198512e0ccommit hash: 9ad42aa3d75e8fe7951768825f2c385198512e0ccommit hash: 9ad42aa3d75e8fe7951768825f2c385198512e0c files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-avogadrolibs: Simplify patch
1.97.0
16 Oct 2022 07:09:36
commit hash: 0e793c131a9783b574c744fdcb1dfa8a0d590eeccommit hash: 0e793c131a9783b574c744fdcb1dfa8a0d590eeccommit hash: 0e793c131a9783b574c744fdcb1dfa8a0d590eeccommit hash: 0e793c131a9783b574c744fdcb1dfa8a0d590eec files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}avogadrolibs: Update 1.95.1 -> 1.97.0
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.95.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.95.1
05 Feb 2022 09:44:22
commit hash: e5acfa3afb14874a6b5d50e21fae46559b2db04bcommit hash: e5acfa3afb14874a6b5d50e21fae46559b2db04bcommit hash: e5acfa3afb14874a6b5d50e21fae46559b2db04bcommit hash: e5acfa3afb14874a6b5d50e21fae46559b2db04b files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-avogadrolibs: Update 1.94.0 -> 1.95.1
1.94.0
04 Jun 2021 17:56:40
commit hash: 60cd6ed1241d7c4ee6af7330a37f615e5f54d4bbcommit hash: 60cd6ed1241d7c4ee6af7330a37f615e5f54d4bbcommit hash: 60cd6ed1241d7c4ee6af7330a37f615e5f54d4bbcommit hash: 60cd6ed1241d7c4ee6af7330a37f615e5f54d4bb files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-avogadrolibs: Update 1.93.0 -> 1.94.0
1.93.0_1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.93.0_1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.93.0_1
25 Dec 2020 09:16:26
Revision:559224Original commit files touched by this commit
antoine search for other commits by this committer
Mark BROKEN

CMake Error at /usr/local/share/cmake/pybind11/pybind11NewTools.cmake:184
(python3_add_library):
  Unknown CMake command "python3_add_library".

Reported by:	pkg-fallout
1.93.0_1
12 Dec 2020 17:04:37
Revision:557839Original commit files touched by this commit
thierry search for other commits by this committer
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
1.93.0
06 Feb 2020 07:17:20
Revision:525366Original commit files touched by this commit
yuri search for other commits by this committer
science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0

Reported by:	portscout
1.91.0.107_4
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.91.0.107_3
16 Jan 2019 11:13:45
Revision:490472Original commit files touched by this commit
tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.91.0.107_2
26 Dec 2018 09:06:35
Revision:488363Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
1.91.0.107_1
25 Dec 2018 20:25:40
Revision:488341Original commit files touched by this commit
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
1.91.0.107_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.91.0.107
21 Oct 2018 17:52:35
Revision:482717Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/py-avogadrolibs: Python bindings for Avogadro2 chemistry
libraries

Number of commits found: 20